##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546903_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2007476 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.670701916237107 31.0 31.0 34.0 30.0 34.0 2 32.01638226310053 31.0 31.0 34.0 30.0 34.0 3 31.851486144790773 31.0 31.0 34.0 30.0 34.0 4 35.72883710689443 37.0 35.0 37.0 35.0 37.0 5 35.77988578692846 37.0 35.0 37.0 35.0 37.0 6 35.83409066907898 37.0 35.0 37.0 35.0 37.0 7 36.06866981224184 37.0 35.0 37.0 35.0 37.0 8 13.212189336261057 0.0 0.0 35.0 0.0 37.0 9 24.853047309158367 18.0 17.0 38.0 17.0 39.0 10 32.62493947623782 32.0 32.0 37.0 27.0 39.0 11 35.55530228007707 37.0 35.0 37.0 32.0 39.0 12 36.76569881781899 38.0 35.0 39.0 33.0 39.0 13 37.10292078211645 39.0 37.0 39.0 33.0 39.0 14 38.36397695414541 40.0 38.0 41.0 34.0 41.0 15 38.57681337161689 40.0 38.0 41.0 34.0 41.0 16 38.62098724966077 40.0 38.0 41.0 34.0 41.0 17 38.57743106268767 40.0 38.0 41.0 34.0 41.0 18 38.46498139952856 40.0 38.0 41.0 34.0 41.0 19 38.361520635863144 40.0 37.0 41.0 34.0 41.0 20 38.24652100448523 40.0 37.0 41.0 34.0 41.0 21 38.19054773257563 40.0 37.0 41.0 34.0 41.0 22 38.13820538825869 40.0 37.0 41.0 33.0 41.0 23 37.87023356692683 39.0 36.0 41.0 33.0 41.0 24 37.46449621315523 39.0 35.0 41.0 33.0 41.0 25 37.33043682714015 39.0 35.0 41.0 33.0 41.0 26 37.24840795107887 39.0 35.0 41.0 33.0 41.0 27 37.19884123147674 39.0 35.0 41.0 33.0 41.0 28 37.01278271819937 39.0 35.0 41.0 33.0 41.0 29 36.87588045884484 39.0 35.0 41.0 32.0 41.0 30 36.6868625079453 39.0 35.0 41.0 31.0 41.0 31 36.46888779741327 39.0 35.0 41.0 31.0 41.0 32 36.042937997764355 39.0 35.0 41.0 29.0 41.0 33 35.52683817888732 39.0 35.0 41.0 24.0 41.0 34 34.99939775120599 39.0 35.0 41.0 21.0 41.0 35 34.593862143308314 39.0 34.0 41.0 18.0 41.0 36 34.37205575558562 39.0 34.0 41.0 16.0 41.0 37 34.278500465260855 38.0 34.0 41.0 15.0 41.0 38 34.1254968926154 38.0 34.0 40.0 15.0 41.0 39 33.99095730160659 38.0 34.0 40.0 15.0 41.0 40 33.83554423564715 38.0 33.0 40.0 15.0 41.0 41 33.69622351649534 38.0 33.0 40.0 12.0 41.0 42 33.60410485604809 38.0 33.0 40.0 12.0 41.0 43 33.47152095467144 38.0 33.0 40.0 12.0 41.0 44 33.25493007139313 37.0 33.0 40.0 10.0 41.0 45 33.16447319918146 37.0 33.0 40.0 10.0 41.0 46 33.121167077464435 37.0 33.0 40.0 10.0 41.0 47 33.08018975071184 37.0 33.0 40.0 12.0 41.0 48 32.97454166326273 37.0 32.0 40.0 12.0 41.0 49 32.880287485379654 36.0 32.0 40.0 12.0 41.0 50 32.78942463073033 36.0 32.0 40.0 12.0 41.0 51 32.45735689990814 36.0 31.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 10.0 13 5.0 14 19.0 15 48.0 16 132.0 17 342.0 18 893.0 19 1949.0 20 3727.0 21 6388.0 22 10591.0 23 17198.0 24 28395.0 25 45252.0 26 59831.0 27 62395.0 28 55250.0 29 48699.0 30 48900.0 31 55544.0 32 68459.0 33 90043.0 34 128742.0 35 188384.0 36 217160.0 37 335847.0 38 369264.0 39 163964.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.78726719522425 19.36077940657821 23.298061844824048 26.55389155337349 2 44.26907220808617 20.642538192237417 23.721927435247046 11.366462164429363 3 26.690879492457192 21.773560431108514 39.472103277947035 12.063456798487254 4 23.864096009117915 23.457914316285724 38.73236840689503 13.945621267701332 5 20.833524286218115 26.817306906782445 38.0543030153287 14.294865791670736 6 19.011186186036593 34.86910926955042 36.20890112758509 9.910803416827898 7 73.41626998280428 3.80348258210808 20.37563587310633 2.404611561981314 8 27.365109221729178 63.73874457278692 7.5606383339078524 1.3355078715760487 9 68.01530877579609 5.231992810872957 22.354488920415484 4.398209492915482 10 34.75169815230667 24.171746013401904 27.47514789716041 13.601407937131004 11 27.191109632194856 22.304475869200928 34.05131618011872 16.4530983184855 12 24.113712941026442 19.455475432832074 39.50139379001293 16.92941783612855 13 21.661678645224153 20.533097282358543 40.20177576220089 17.60344831021641 14 18.066268289135213 24.546395573346828 39.914300345309236 17.473035792208723 15 17.15303196650919 21.550444438688185 43.28066686725022 18.01585672755241 16 19.75655001604004 19.59580089624982 42.2153988391393 18.432250248570842 17 19.63679765038287 19.78230374858778 38.217393383532354 22.363505217496996 18 21.490169745491354 21.13534607636654 38.29619880885251 19.078285369289596 19 23.221647481713354 22.745327964070306 35.517784521458786 18.515240032757553 20 24.408710241118698 21.72539049034708 34.49331399229679 19.372585276237427 21 23.389868670908147 22.680121705066462 36.14852680679619 17.781482817229197 22 21.912291853053286 20.11765022346469 36.16959804251707 21.800459880964954 23 20.559050270090403 23.339008785161067 35.69870822864134 20.40323271610719 24 20.37708047319121 22.359619741406622 37.508991390183496 19.754308395218672 25 22.032641984262828 21.535599927471115 36.31101940944749 20.120738678818576 26 20.071721903524626 22.86273908131405 35.85761423797844 21.20792477718289 27 20.597108010257656 21.448475598213875 37.548742799415784 20.405673592112684 28 20.04273027423491 22.272495412149386 38.539489388665174 19.145284924950534 29 20.490855183324733 22.94707383799358 37.28438098388225 19.27768999479944 30 21.622076677379955 20.953824603631624 38.210568893476186 19.213529825512236 31 24.000934506813532 21.022069504193325 34.65291739477832 20.324078594214825 32 23.38015498068221 22.44569798094722 34.8718490283321 19.302298010038477 33 22.717681307273413 21.87388541631382 34.41102160125451 20.997411675158258 34 20.77140648256816 23.632760740352563 34.60380099189231 20.99203178518697 35 21.214400570666847 23.53935987279549 34.100831093372975 21.145408463164692 36 23.650195568963213 24.676309953394213 30.724252743245746 20.949241734396825 37 22.12170905156525 25.522546720359294 30.711151714889738 21.644592513185714 38 22.06028864105972 26.961966170454836 29.265405912698334 21.71233927578711 39 22.121808679157308 24.25857145988296 29.343065620709787 24.276554240249943 40 23.40426485796094 23.786386487310434 31.27698662399949 21.532362030729136 41 21.074224548637194 24.381312653301958 31.265728706096613 23.27873409196424 42 22.16275561949433 26.313091663362354 29.63318116879106 21.89097154835226 43 21.88728532744601 25.094845467641953 30.360213521855307 22.657655683056735 44 22.56430462929569 25.45031671611516 31.06174121135197 20.92363744323718 45 21.8982443625727 25.135543338998822 30.896508849919 22.069703448509472 46 22.612823266629338 24.97031097756586 30.93964759728136 21.47721815852344 47 22.214113643201713 25.8161492341627 31.429616095036756 20.540121027598836 48 21.65609950006874 25.405534113483796 31.40097316231925 21.53739322412821 49 21.37265900065555 24.475460727799486 32.05557625595524 22.096304015589727 50 20.174238695755268 24.4460207743455 33.63935608694699 21.740384442952244 51 20.87018724009652 25.02630168430407 32.355505121854506 21.7480059537449 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1510.0 1 3089.0 2 4668.0 3 49867.5 4 95067.0 5 65006.0 6 34945.0 7 34171.5 8 33398.0 9 33136.5 10 32875.0 11 31737.0 12 30599.0 13 28966.5 14 27334.0 15 25768.5 16 24203.0 17 22345.0 18 20487.0 19 19124.0 20 17761.0 21 16915.5 22 16070.0 23 15807.5 24 15545.0 25 15696.5 26 16856.5 27 17865.0 28 19498.5 29 21132.0 30 23300.5 31 25469.0 32 28604.5 33 31740.0 34 35151.0 35 38562.0 36 43211.0 37 47860.0 38 53898.0 39 59936.0 40 67164.5 41 74393.0 42 82867.0 43 91341.0 44 102593.5 45 113846.0 46 124496.0 47 135146.0 48 137185.0 49 139224.0 50 134426.0 51 129628.0 52 120590.5 53 111553.0 54 108118.0 55 104683.0 56 103326.5 57 101970.0 58 98900.5 59 95831.0 60 88895.5 61 81960.0 62 73795.0 63 65630.0 64 56822.0 65 48014.0 66 41309.5 67 34605.0 68 29930.0 69 25255.0 70 21437.5 71 17620.0 72 14598.0 73 11576.0 74 9078.5 75 4862.0 76 3143.0 77 2328.0 78 1513.0 79 1083.0 80 653.0 81 457.5 82 262.0 83 183.5 84 105.0 85 68.5 86 32.0 87 26.0 88 20.0 89 13.0 90 6.0 91 6.5 92 7.0 93 4.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2007476.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.81669621837728 #Duplication Level Percentage of deduplicated Percentage of total 1 69.05781089935186 27.496538780856365 2 9.075194471958078 7.226885228253031 3 5.259614597821485 6.282614300016019 4 3.6718192101065465 5.847988402304575 5 2.820984400372014 5.616113945319684 6 2.186526347269239 5.223615320561843 7 1.678480341877939 4.678207931675035 8 1.3052184242511113 4.157558839762846 9 1.0051170272079877 3.6018395402633003 >10 3.861787897316043 22.07792753267813 >50 0.046721531548041706 1.2886216947541587 >100 0.025794767973386534 2.1003464498717492 >500 0.0037923714971571736 1.0734065614317618 >1k 8.848866826700067E-4 0.45682443737947426 >5k 0.0 0.0 >10k+ 2.528247664771448E-4 2.8715110348720807 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36601 1.8232347485100695 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20449 1.0186423150264312 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.981379603043822E-5 0.0 0.0 0.01036126957433115 0.0 2 4.981379603043822E-5 0.0 0.0 0.051507465095473125 0.0 3 4.981379603043822E-5 0.0 0.0 0.1137747101335209 0.0 4 4.981379603043822E-5 0.0 0.0 0.15955358868549363 0.0 5 4.981379603043822E-5 1.4944138809131467E-4 0.0 0.3012738383920904 0.0 6 4.981379603043822E-5 1.4944138809131467E-4 0.0 0.5892473932440537 0.0 7 4.981379603043822E-5 1.4944138809131467E-4 0.0 0.7558247271698392 0.0 8 4.981379603043822E-5 1.4944138809131467E-4 0.0 1.0306474398697667 0.0 9 4.981379603043822E-5 1.4944138809131467E-4 0.0 1.5428328906547326 0.0 10 4.981379603043822E-5 1.4944138809131467E-4 0.0 2.264734422727843 0.0 11 4.981379603043822E-5 1.4944138809131467E-4 0.0 2.67584768136705 0.0 12 4.981379603043822E-5 1.4944138809131467E-4 0.0 3.0175703221358563 0.0 13 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.232417224415136 0.0 14 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.3442990102995003 0.0 15 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.423253877007745 0.0 16 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.526368434790752 0.0 17 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.6276398821206333 0.0 18 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.829286128451847 0.0 19 9.962759206087644E-5 1.4944138809131467E-4 0.0 3.9107316849616134 0.0 20 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.008416538977303 0.0 21 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.102763868658953 0.0 22 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.2043840125610465 0.0 23 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.316465053629533 0.0 24 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.413552142092857 0.0 25 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.497438574608115 0.0 26 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.580179289814673 0.0 27 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.680653716408067 0.0 28 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.78107832920543 4.981379603043822E-5 29 9.962759206087644E-5 1.4944138809131467E-4 0.0 4.882698473107524 4.981379603043822E-5 30 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.016996467205585 4.981379603043822E-5 31 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.130771177339106 4.981379603043822E-5 32 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.265118985233198 4.981379603043822E-5 33 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.383227495621368 4.981379603043822E-5 34 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.495159095301762 4.981379603043822E-5 35 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.625023661553114 4.981379603043822E-5 36 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.738599116502513 4.981379603043822E-5 37 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.858999061508083 4.981379603043822E-5 38 9.962759206087644E-5 1.4944138809131467E-4 0.0 5.994293331526753 4.981379603043822E-5 39 9.962759206087644E-5 1.4944138809131467E-4 0.0 6.162265451741391 4.981379603043822E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCATACG 25 3.89185E-5 45.0 1 CGTTTTT 32430 0.0 43.88298 1 GTTTTTA 21530 0.0 43.25476 2 TATGCGA 80 0.0 42.1875 2 CGGTCTA 365 0.0 41.30137 31 TATTTTT 23675 0.0 40.17212 7 TTATTTT 23695 0.0 40.157207 6 TTTTATT 24125 0.0 39.590675 4 AGACTTA 1745 0.0 39.58453 8 TTTATTT 24215 0.0 39.387775 5 CGCATCG 120 0.0 39.374996 21 ACGACGG 390 0.0 39.23077 27 CACGACG 400 0.0 38.8125 26 TCACGAC 415 0.0 38.493973 25 CTATCTC 1145 0.0 38.31878 6 TTTTTAT 25020 0.0 38.21043 3 CGACGGT 415 0.0 37.951805 28 ACGGTCT 405 0.0 37.77778 30 GAGACTT 2215 0.0 37.686226 7 TCTCACG 420 0.0 37.5 23 >>END_MODULE