SRR1546897_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546897_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	840036
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15812	1.8823002823688508	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8726	1.0387650053092963	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCG	2288	0.27236927941183475	No Hit
GAATCTGACTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC	2276	0.27094076920512933	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC	1653	0.19677728097367256	RNA PCR Primer, Index 34 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGC	1060	0.12618506825897938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGCGA	35	1.2114106E-7	45.000004	2
CGACGGT	110	0.0	45.0	28
CGCGCGA	20	7.032202E-4	45.0	2
TAAGTCG	20	7.032202E-4	45.0	1
TCGGCGA	20	7.032202E-4	45.0	8
CGAACCC	30	2.1648011E-6	44.999996	34
CGTTTTT	11810	0.0	44.028366	1
AGCGATA	145	0.0	43.44828	8
GTTTTTA	7780	0.0	43.17802	2
CGAGATC	80	0.0	42.1875	6
GAGCGAT	705	0.0	41.48936	7
CGAATGC	125	0.0	41.399998	45
CGCATCG	60	3.6379788E-12	41.249996	21
CACGACG	120	0.0	41.249996	26
CGGTCTA	120	0.0	41.249996	31
ATTGCGA	60	3.6379788E-12	41.249996	2
GTTACGA	50	1.0804797E-9	40.5	2
TATTTTT	8515	0.0	40.296535	7
ACCGCTC	95	0.0	40.26316	18
CCGACCG	95	0.0	40.26316	15