##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546897_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 840036 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60045045688518 31.0 31.0 34.0 30.0 34.0 2 31.92651148284121 31.0 31.0 34.0 30.0 34.0 3 31.78237242213429 31.0 31.0 34.0 30.0 34.0 4 35.65131018194458 37.0 35.0 37.0 33.0 37.0 5 35.67823164721512 37.0 35.0 37.0 33.0 37.0 6 35.74656681380322 37.0 35.0 37.0 35.0 37.0 7 35.96781090334224 37.0 35.0 37.0 35.0 37.0 8 13.370136517958754 0.0 0.0 35.0 0.0 37.0 9 24.90966101452795 18.0 17.0 38.0 17.0 39.0 10 32.50520691970344 32.0 32.0 37.0 27.0 39.0 11 35.41386916751187 37.0 34.0 37.0 32.0 39.0 12 36.60022427610245 37.0 35.0 39.0 33.0 39.0 13 36.88873333999972 39.0 37.0 39.0 33.0 39.0 14 38.1267850425458 40.0 37.0 41.0 33.0 41.0 15 38.33710698112938 40.0 37.0 41.0 33.0 41.0 16 38.413301334704705 40.0 38.0 41.0 34.0 41.0 17 38.337134360908344 40.0 37.0 41.0 33.0 41.0 18 38.23635772752596 40.0 37.0 41.0 33.0 41.0 19 38.16849515973125 40.0 37.0 41.0 34.0 41.0 20 38.01004599802866 40.0 36.0 41.0 33.0 41.0 21 37.99132180049426 40.0 36.0 41.0 33.0 41.0 22 37.94843078153794 40.0 36.0 41.0 33.0 41.0 23 37.70280559404597 39.0 36.0 41.0 33.0 41.0 24 37.384664466760945 39.0 35.0 41.0 33.0 41.0 25 37.289182844544754 39.0 35.0 41.0 33.0 41.0 26 37.18834430905342 39.0 35.0 41.0 33.0 41.0 27 37.0943828597822 39.0 35.0 41.0 33.0 41.0 28 36.94352027770238 39.0 35.0 41.0 32.0 41.0 29 36.824324195629714 39.0 35.0 41.0 32.0 41.0 30 36.6186115833131 39.0 35.0 41.0 31.0 41.0 31 36.41165616711665 39.0 35.0 41.0 31.0 41.0 32 35.99614659371741 39.0 35.0 41.0 29.0 41.0 33 35.5391852253951 39.0 35.0 41.0 25.0 41.0 34 35.02248356022837 38.0 35.0 41.0 22.0 41.0 35 34.65697422491417 38.0 34.0 41.0 19.0 41.0 36 34.47397611530934 38.0 34.0 40.0 18.0 41.0 37 34.36986510101948 38.0 34.0 40.0 18.0 41.0 38 34.268214695560665 38.0 34.0 40.0 18.0 41.0 39 34.14334504711703 38.0 34.0 40.0 15.0 41.0 40 34.05782847401778 38.0 33.0 40.0 15.0 41.0 41 33.96398011513792 38.0 33.0 40.0 15.0 41.0 42 33.88018965853844 38.0 33.0 40.0 15.0 41.0 43 33.76435533715222 38.0 33.0 40.0 15.0 41.0 44 33.61180949387883 38.0 33.0 40.0 14.0 41.0 45 33.54522544271912 38.0 33.0 40.0 15.0 41.0 46 33.486407725383195 37.0 33.0 40.0 15.0 41.0 47 33.38337523629939 37.0 33.0 40.0 13.0 41.0 48 33.31643048631249 37.0 33.0 40.0 13.0 41.0 49 33.210713588465254 37.0 33.0 40.0 12.0 41.0 50 33.081310800965674 37.0 33.0 40.0 12.0 41.0 51 32.77102647981753 36.0 32.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 3.0 14 5.0 15 13.0 16 56.0 17 168.0 18 404.0 19 898.0 20 1905.0 21 3413.0 22 5481.0 23 8400.0 24 12714.0 25 18564.0 26 22822.0 27 22303.0 28 20167.0 29 19167.0 30 20071.0 31 23554.0 32 29741.0 33 39487.0 34 56754.0 35 85456.0 36 87769.0 37 135666.0 38 156105.0 39 68939.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.51360655971887 20.129970620306747 24.07384921598598 23.282573603988403 2 41.42715312200906 23.468518015894556 23.60255989029042 11.50176897180597 3 26.278278549966906 24.180630353937214 37.875162493036015 11.66592860305987 4 23.66993795504002 23.539467356160927 39.26986462484941 13.52073006394964 5 22.34344718559681 27.20514358908428 36.49248365546239 13.95892556985653 6 18.560871200758065 37.33589989000471 34.841602026579814 9.26162688265741 7 74.4251436843183 4.091134189487118 19.447261784018778 2.0364603421758116 8 28.015108876286256 63.90071377893328 6.74268721816684 1.3414901266136214 9 69.34964691989391 5.678923284240199 19.543210052902495 5.428219742963396 10 36.82294568328024 25.15582665504812 25.528667818998237 12.492559842673408 11 29.917527344066208 22.572127861186903 32.43039584017828 15.079948954568614 12 25.876152926779326 20.897437728859238 36.98424829412073 16.242161050240703 13 21.62323995638282 25.917103552704884 37.420539119752014 15.039117371160286 14 16.978796146831804 30.92081767924232 37.29578256169974 14.804603612226142 15 15.922174763938687 23.984448285549668 44.534400906627816 15.558976043883835 16 18.384926360298845 22.48284597326781 41.728568775623906 17.403658890809442 17 18.33742839592589 22.637482203143673 36.434152822021915 22.590936578908526 18 20.50138327405016 23.63517754001019 37.56565194824984 18.297787237689814 19 22.778904713607513 25.247965563380614 33.82843116247399 18.14469856053788 20 24.845601855158588 24.131941964392002 33.342142479608015 17.680313700841392 21 21.602645600902818 26.32637172692599 35.57383255003357 16.497150122137622 22 20.58042750548786 22.767357589436642 35.83834502330853 20.813869881766973 23 19.886885800132376 26.74647277021461 34.590184230199654 18.776457199453354 24 19.671180758919856 25.682351708736288 36.94782128384974 17.698646248494114 25 19.438095510192422 26.08471541695832 36.030717731144854 18.446471341704402 26 17.58615106971606 27.096695855891888 35.32991443223862 19.987238642153432 27 19.399287649576923 26.334585660614547 35.80156088548586 18.46456580432267 28 17.541748210790967 26.028051178759004 38.88964282483131 17.540557785618713 29 19.44202391326086 25.3348666009552 37.911232375755326 17.311877110028618 30 19.743677651910158 25.904604088396212 37.10305272631173 17.248665533381903 31 24.556447580817963 24.106466865705755 32.63074439666872 18.706341156807564 32 25.923650891152285 25.600331414367954 32.17707336352252 16.298944330957244 33 23.74410144327148 25.07773476374822 31.607693003633173 19.570470789347123 34 20.119137751239233 27.647386540576836 32.66883800218086 19.564637706003076 35 20.534477093838834 28.011894728321167 32.30921055764277 19.14441762019723 36 24.20658162269236 27.954635277535722 29.620159136037028 18.21862396373489 37 21.016123118533013 29.622063816312632 30.448933140960627 18.912879924193724 38 20.17627815950745 31.529839197367732 27.850473074963457 20.443409568161364 39 20.647924612754693 29.301601359941714 28.642343899547164 21.40813012775643 40 21.103619368693725 27.3825169397502 29.90098043417187 21.61288325738421 41 18.61479746106119 27.282164097729144 30.302867972324997 23.800170468884666 42 20.838868810384316 28.782814069873197 28.78340928245932 21.594907837283163 43 21.29587303401283 27.645124732749547 28.740673018775386 22.31832921446224 44 20.951125904127917 28.756148546014693 30.204657895613995 20.08806765424339 45 20.584474951073524 29.672061673547322 28.83269288459066 20.91077049078849 46 22.516773090677066 29.40826345537572 28.908999138132174 19.16596431581504 47 20.489717107362065 28.78198077225262 30.394768795623044 20.33353332476227 48 21.402297044412382 27.814046064692466 30.30929626825517 20.47436062263998 49 20.93267431395797 26.728735435148014 31.564004399811434 20.774585851082573 50 19.329885862034484 28.536157974182057 31.658881286040124 20.475074877743335 51 19.849625492240808 29.072801641834396 30.102281330800107 20.975291535124686 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 644.0 1 1209.5 2 1775.0 3 18909.5 4 36044.0 5 23855.0 6 11666.0 7 11643.5 8 11621.0 9 12027.0 10 12433.0 11 12742.5 12 13052.0 13 12543.0 14 12034.0 15 11468.5 16 10903.0 17 10311.0 18 9719.0 19 9074.5 20 8430.0 21 7964.5 22 7499.0 23 7314.5 24 7130.0 25 7478.5 26 8759.0 27 9691.0 28 10660.5 29 11630.0 30 13019.0 31 14408.0 32 16215.5 33 18023.0 34 19727.0 35 21431.0 36 23371.0 37 25311.0 38 29884.5 39 34458.0 40 39779.5 41 45101.0 42 47591.0 43 50081.0 44 51608.0 45 53135.0 46 57191.5 47 61248.0 48 65259.5 49 69271.0 50 63133.0 51 56995.0 52 52264.0 53 47533.0 54 43393.0 55 39253.0 56 36442.0 57 33631.0 58 30531.5 59 27432.0 60 24642.0 61 21852.0 62 19342.5 63 16833.0 64 14002.5 65 11172.0 66 9366.5 67 7561.0 68 6386.5 69 5212.0 70 4248.0 71 3284.0 72 2779.0 73 2274.0 74 1786.0 75 950.5 76 603.0 77 447.5 78 292.0 79 211.5 80 131.0 81 95.5 82 60.0 83 41.5 84 23.0 85 18.5 86 14.0 87 10.5 88 7.0 89 6.0 90 5.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 840036.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.213072254898755 #Duplication Level Percentage of deduplicated Percentage of total 1 73.68215159761375 32.577142924817004 2 8.836004984023502 7.813338536065531 3 4.494713089300757 5.961752237468808 4 2.84966192771872 5.039692348490473 5 2.066815349736654 4.569012819772027 6 1.5858640132398265 4.20695521222897 7 1.2225114635562835 3.783569136945919 8 0.9858053164374034 3.4868385347928195 9 0.7879857306699729 3.135534304134663 >10 3.4359609496863093 22.510826023846953 >50 0.027744482315261228 0.8235329582089864 >100 0.02208749834309105 2.003369234774921 >500 0.0010774389433910454 0.29951691980947753 >1k 0.0010774389433910454 0.8666340459059911 >5k 2.6935973584776135E-4 1.0391986649135192 >10k+ 2.6935973584776135E-4 1.8830860978240394 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15812 1.8823002823688508 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8726 1.0387650053092963 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCG 2288 0.27236927941183475 No Hit GAATCTGACTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC 2276 0.27094076920512933 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC 1653 0.19677728097367256 RNA PCR Primer, Index 34 (95% over 22bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGC 1060 0.12618506825897938 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0077377636196543954 0.0 2 0.0 0.0 0.0 0.05083115485526811 0.0 3 0.0 0.0 0.0 0.09047231309134371 0.0 4 0.0 0.0 0.0 0.1752305853558657 0.0 5 0.0 0.0 0.0 0.4637896471103619 0.0 6 0.0 0.0 0.0 0.6724711798065797 0.0 7 0.0 0.0 0.0 0.8380593212671837 0.0 8 0.0 0.0 0.0 1.0693589322362376 0.0 9 0.0 0.0 0.0 1.4602945588046226 0.0 10 0.0 0.0 0.0 2.209310077187168 0.0 11 0.0 0.0 0.0 2.473346380393221 0.0 12 0.0 0.0 0.0 2.8670199848577917 0.0 13 0.0 0.0 0.0 3.025822702836545 0.0 14 0.0 0.0 0.0 3.123199481926965 0.0 15 0.0 0.0 0.0 3.206291158950331 0.0 16 0.0 0.0 0.0 3.3112866591431795 0.0 17 0.0 0.0 0.0 3.4117585436814615 0.0 18 0.0 0.0 0.0 3.6097262498273883 0.0 19 0.0 0.0 0.0 3.710674304434572 0.0 20 0.0 0.0 0.0 3.8026941702498465 0.0 21 0.0 0.0 0.0 3.898642439133561 0.0 22 0.0 0.0 0.0 4.003399854291959 0.0 23 0.0 0.0 0.0 4.1062525891747494 0.0 24 0.0 0.0 0.0 4.191487031508173 0.0 25 0.0 0.0 0.0 4.263150626877896 0.0 26 0.0 0.0 0.0 4.337790285178254 0.0 27 0.0 0.0 0.0 4.433619511544744 0.0 28 0.0 0.0 0.0 4.527901185187302 0.0 29 0.0 0.0 0.0 4.620278178554252 0.0 30 0.0 0.0 0.0 4.750867819950574 0.0 31 0.0 0.0 0.0 4.847173216385964 0.0 32 0.0 0.0 0.0 4.965144350956388 0.0 33 0.0 0.0 0.0 5.080615592665076 0.0 34 0.0 0.0 0.0 5.197158217028794 0.0 35 0.0 0.0 0.0 5.325009880528929 0.0 36 0.0 0.0 0.0 5.43833835692756 0.0 37 0.0 0.0 0.0 5.542381516982606 0.0 38 0.0 0.0 0.0 5.6780899866196215 0.0 39 1.1904251722545224E-4 0.0 0.0 5.8493921689070465 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGCGA 35 1.2114106E-7 45.000004 2 CGACGGT 110 0.0 45.0 28 CGCGCGA 20 7.032202E-4 45.0 2 TAAGTCG 20 7.032202E-4 45.0 1 TCGGCGA 20 7.032202E-4 45.0 8 CGAACCC 30 2.1648011E-6 44.999996 34 CGTTTTT 11810 0.0 44.028366 1 AGCGATA 145 0.0 43.44828 8 GTTTTTA 7780 0.0 43.17802 2 CGAGATC 80 0.0 42.1875 6 GAGCGAT 705 0.0 41.48936 7 CGAATGC 125 0.0 41.399998 45 CGCATCG 60 3.6379788E-12 41.249996 21 CACGACG 120 0.0 41.249996 26 CGGTCTA 120 0.0 41.249996 31 ATTGCGA 60 3.6379788E-12 41.249996 2 GTTACGA 50 1.0804797E-9 40.5 2 TATTTTT 8515 0.0 40.296535 7 ACCGCTC 95 0.0 40.26316 18 CCGACCG 95 0.0 40.26316 15 >>END_MODULE