##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546896_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1114118 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.694815091399654 31.0 31.0 34.0 30.0 34.0 2 32.04368029239273 31.0 31.0 34.0 30.0 34.0 3 32.027352578452195 33.0 31.0 34.0 30.0 34.0 4 35.81272540251571 37.0 35.0 37.0 35.0 37.0 5 35.813287281957564 37.0 35.0 37.0 35.0 37.0 6 35.86012253639202 37.0 35.0 37.0 35.0 37.0 7 36.067531446399755 37.0 35.0 37.0 35.0 37.0 8 13.29995117213796 0.0 0.0 35.0 0.0 37.0 9 24.93222261914806 18.0 17.0 39.0 17.0 39.0 10 32.59916543849036 32.0 32.0 37.0 27.0 39.0 11 35.509260239938676 37.0 34.0 37.0 32.0 39.0 12 36.62839932574467 37.0 35.0 39.0 33.0 39.0 13 36.904965183221165 39.0 37.0 39.0 33.0 39.0 14 38.07723329126717 40.0 37.0 41.0 33.0 41.0 15 38.34546609964115 40.0 37.0 41.0 34.0 41.0 16 38.42720789000806 40.0 38.0 41.0 34.0 41.0 17 38.38670320378991 40.0 37.0 41.0 34.0 41.0 18 38.323489971439294 40.0 37.0 41.0 34.0 41.0 19 38.29723332717001 40.0 37.0 41.0 34.0 41.0 20 38.2331934319345 40.0 37.0 41.0 34.0 41.0 21 38.16472043356269 40.0 37.0 41.0 34.0 41.0 22 38.12363591648281 40.0 37.0 41.0 33.0 41.0 23 37.98256378588265 40.0 36.0 41.0 33.0 41.0 24 37.807496153908296 40.0 35.0 41.0 33.0 41.0 25 37.69412575687674 40.0 35.0 41.0 33.0 41.0 26 37.62010576976586 40.0 35.0 41.0 33.0 41.0 27 37.56259480593618 40.0 35.0 41.0 33.0 41.0 28 37.44376807483588 40.0 35.0 41.0 33.0 41.0 29 37.381407534928975 40.0 35.0 41.0 33.0 41.0 30 37.25868893600139 40.0 35.0 41.0 33.0 41.0 31 37.14794124141249 40.0 35.0 41.0 32.0 41.0 32 36.956265853347674 40.0 35.0 41.0 31.0 41.0 33 36.72674348677609 40.0 35.0 41.0 31.0 41.0 34 36.46824483582529 40.0 35.0 41.0 30.0 41.0 35 36.270413905887885 40.0 35.0 41.0 30.0 41.0 36 36.12940101497328 39.0 35.0 41.0 29.0 41.0 37 36.05951075200293 39.0 35.0 41.0 29.0 41.0 38 35.95272044792383 39.0 35.0 41.0 28.0 41.0 39 35.859699780454136 39.0 35.0 41.0 27.0 41.0 40 35.74676919320934 39.0 35.0 41.0 27.0 41.0 41 35.64049499245143 39.0 35.0 41.0 26.0 41.0 42 35.588349708020154 39.0 35.0 40.0 26.0 41.0 43 35.480193300889134 39.0 35.0 40.0 26.0 41.0 44 35.299280686605904 38.0 35.0 40.0 25.0 41.0 45 35.21270906672363 38.0 35.0 40.0 24.0 41.0 46 35.18609249648601 38.0 35.0 40.0 25.0 41.0 47 35.13524330456917 38.0 34.0 40.0 24.0 41.0 48 35.05009792499538 38.0 34.0 40.0 24.0 41.0 49 34.92833793188872 38.0 34.0 40.0 24.0 41.0 50 34.81408432499968 38.0 34.0 40.0 24.0 41.0 51 34.4712382350882 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 5.0 14 7.0 15 21.0 16 66.0 17 140.0 18 374.0 19 793.0 20 1415.0 21 2521.0 22 4062.0 23 6234.0 24 9819.0 25 14298.0 26 18064.0 27 19496.0 28 19408.0 29 20107.0 30 23549.0 31 28562.0 32 37244.0 33 50684.0 34 77022.0 35 111709.0 36 120671.0 37 200242.0 38 242749.0 39 104835.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.164154963836864 21.918234872787263 26.42951644260303 17.48809372077284 2 36.09375308540029 23.233266135184962 27.875593070033872 12.797387709380873 3 29.54417754672306 23.702067465026147 33.56700098194267 13.18675400630813 4 26.382573479649373 25.888729919092953 32.331045724061546 15.397650877196131 5 22.833936800231214 30.45251939202131 31.76279352815411 14.950750279593365 6 21.15323511513143 38.80127598692418 29.46599911319986 10.579489784744524 7 82.40608265910792 4.596999599683337 10.862224647658508 2.134693093550234 8 31.26473138392881 63.507994664838016 4.08843587483552 1.1388380763976527 9 77.97692883518621 5.595188301418701 12.794694996400741 3.63318786699434 10 41.907679437905145 26.883328336854806 19.001577929806356 12.207414295433697 11 35.09457705557221 22.340811296469496 26.597182704165984 15.967428943792308 12 30.73031761447172 21.369459967436125 30.72197020423331 17.178252213858855 13 23.995483422761325 27.014283944788613 31.731827328882577 17.258405303567486 14 18.850516731620885 30.11736638309407 33.69427654880363 17.337840336481413 15 18.42084949709097 23.219982084482975 41.06315489023604 17.296013528190013 16 22.13463923929063 21.068683927555252 38.38202057591745 18.41465625723667 17 21.882242275952816 20.77212647134325 31.725454574829598 25.620176677874333 18 23.747933342787746 22.354005590072145 34.023595346273915 19.87446572086619 19 26.675181623490513 23.849897407635456 29.23263065492165 20.24229031395238 20 26.898766557940903 24.65546737419196 28.356332094086984 20.089433973780157 21 25.002827348629143 24.965578152403964 31.76476818433954 18.266826314627355 22 23.677563776906936 21.934391150668063 31.33088236614075 23.057162706284252 23 21.341635266641415 26.07192415884134 30.826178196564456 21.760262377952785 24 21.80702582670776 24.270858203529606 34.18686350996932 19.73525245979331 25 22.321513520111875 23.786349381304316 32.68486820965104 21.20726888893277 26 19.838832152429095 26.98134308933165 30.136574402352355 23.043250355886897 27 20.265896431078218 25.861533517993607 32.5317425981808 21.340827452747373 28 19.378288475726986 25.469833536483566 34.99934477317483 20.15253321461461 29 20.43131876515773 25.28637002543716 33.91480974187653 20.367501467528573 30 22.235167190548935 25.003096619927152 33.06669491023392 19.695041279289985 31 26.585155252854726 23.82754788990035 28.987055231133507 20.60024162611142 32 26.704891223371312 24.980388073794696 28.943074252458 19.371646450375994 33 25.507172489808084 24.647568749450237 29.067387835040815 20.777870925700867 34 21.454639454707667 26.312383427967234 30.639662944140568 21.593314173184528 35 21.751735453515696 26.971828836801848 30.257656729359006 21.01877898032345 36 26.15468020443077 26.727420255305095 27.272963905080072 19.844935635184065 37 22.118393204310493 29.503966366219736 27.678665994086803 20.698974435382965 38 22.932669609502764 30.29418786878948 25.57332347202002 21.199819049687736 39 22.19351989645621 27.473032479503967 27.13931558416613 23.194132039873693 40 23.72854580933079 24.97697730401986 28.06156977986174 23.23290710678761 41 20.601857253899496 24.6070882976489 29.36008573598129 25.430968712470314 42 22.416117502813883 26.33482270280168 26.928745429119715 24.32031436526472 43 22.106186238800557 25.62924214490745 27.875323798735863 24.38924781755613 44 21.751376425118345 26.836116102603135 28.636284486921493 22.776222985357027 45 21.10494579568771 28.645619225252624 27.42644854494766 22.822986434112007 46 22.705853419476213 27.427525630139716 28.572108160894988 21.294512789489083 47 21.687379613290513 27.038338847411136 28.68277866437846 22.591502874919893 48 22.023160921913117 26.186992760192368 29.77934114698802 22.010505170906494 49 22.575436354138432 24.59344521854956 30.864145449584335 21.96697297772767 50 21.398271996323547 27.81895634035174 28.94702356482886 21.83574809849585 51 20.7145024135684 28.723079601981116 28.298528522113457 22.263889462337026 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 856.0 1 1643.5 2 2431.0 3 13735.0 4 25039.0 5 16706.5 6 8374.0 7 8293.0 8 8212.0 9 8208.5 10 8205.0 11 8026.5 12 7848.0 13 7594.5 14 7341.0 15 6916.5 16 6492.0 17 6283.0 18 6074.0 19 5987.0 20 5900.0 21 6112.5 22 6325.0 23 6557.5 24 6790.0 25 7699.0 26 10193.0 27 11778.0 28 13368.5 29 14959.0 30 17093.0 31 19227.0 32 21376.0 33 23525.0 34 25595.5 35 27666.0 36 31473.0 37 35280.0 38 41670.0 39 48060.0 40 55985.5 41 63911.0 42 69955.5 43 76000.0 44 78534.0 45 81068.0 46 82019.5 47 82971.0 48 80858.0 49 78745.0 50 75813.5 51 72882.0 52 69582.0 53 66282.0 54 64130.0 55 61978.0 56 59511.5 57 57045.0 58 53165.5 59 49286.0 60 44310.5 61 39335.0 62 34929.0 63 30523.0 64 26115.5 65 21708.0 66 18185.0 67 14662.0 68 12832.5 69 11003.0 70 9292.0 71 7581.0 72 6222.5 73 4864.0 74 3764.5 75 2025.0 76 1385.0 77 1039.5 78 694.0 79 495.5 80 297.0 81 220.5 82 144.0 83 103.0 84 62.0 85 38.5 86 15.0 87 10.5 88 6.0 89 6.0 90 6.0 91 4.0 92 2.0 93 2.5 94 3.0 95 3.0 96 3.0 97 1.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1114118.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.1505491881501 #Duplication Level Percentage of deduplicated Percentage of total 1 70.09728019844917 21.835687747773306 2 7.047160144246653 4.390458174202527 3 3.6705839763658625 3.430221201150612 4 2.6073327507748716 3.2487938841154933 5 2.109961934140503 3.2863236507284026 6 1.7563077915265173 3.282597134968683 7 1.5326036613807208 3.3419012017845353 8 1.30932725756838 3.2629010512215597 9 1.1306001891135762 3.169693512280283 >10 8.650162300423963 46.356398760926496 >50 0.062394607890409216 1.2715340891699705 >100 0.023974402357977296 1.354255974478417 >500 0.0014442411009015189 0.24896859170990263 >1k 2.8884822018030375E-4 0.11526157064704924 >5k 2.8884822018030375E-4 0.5016262735029661 >10k+ 2.8884822018030375E-4 0.9033771813398708 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10040 0.9011612773512321 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5575 0.5003958288080795 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1281 0.1149788442516861 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.7951419867554425E-4 0.0 0.0 0.00421858366887529 0.0 2 1.7951419867554425E-4 0.0 0.0 0.0164255491788123 0.0 3 1.7951419867554425E-4 0.0 0.0 0.03276134125828682 0.0 4 1.7951419867554425E-4 0.0 0.0 0.052328388913921144 0.0 5 1.7951419867554425E-4 0.0 0.0 0.09972013736426483 0.0 6 1.7951419867554425E-4 0.0 0.0 0.1983631895364764 0.0 7 1.7951419867554425E-4 0.0 0.0 0.2616419445696057 0.0 8 1.7951419867554425E-4 0.0 0.0 0.4160241554305738 0.0 9 1.7951419867554425E-4 0.0 0.0 0.6407759321723552 0.0 10 1.7951419867554425E-4 0.0 0.0 0.9477452119075358 0.0 11 1.7951419867554425E-4 0.0 0.0 1.1363248776161952 0.0 12 1.7951419867554425E-4 0.0 0.0 1.3122487923182284 0.0 13 1.7951419867554425E-4 0.0 0.0 1.4237271096957413 0.0 14 1.7951419867554425E-4 0.0 0.0 1.48341558075536 0.0 15 1.7951419867554425E-4 0.0 0.0 1.5246140893513973 0.0 16 1.7951419867554425E-4 0.0 0.0 1.5901367718679709 0.0 17 1.7951419867554425E-4 0.0 0.0 1.659429252556731 0.0 18 1.7951419867554425E-4 0.0 0.0 1.78356332094087 0.0 19 1.7951419867554425E-4 0.0 0.0 1.8406488361196929 0.0 20 1.7951419867554425E-4 0.0 0.0 1.9113774303978572 0.0 21 1.7951419867554425E-4 0.0 0.0 1.9856963086495327 0.0 22 1.7951419867554425E-4 0.0 0.0 2.0680035687422698 0.0 23 1.7951419867554425E-4 0.0 0.0 2.1636846366363347 0.0 24 1.7951419867554425E-4 0.0 0.0 2.2337849312191347 0.0 25 1.7951419867554425E-4 0.0 0.0 2.2982305285436553 0.0 26 1.7951419867554425E-4 0.0 0.0 2.3615990406761225 0.0 27 1.7951419867554425E-4 0.0 0.0 2.434033019841704 0.0 28 1.7951419867554425E-4 0.0 0.0 2.512211453364904 0.0 29 1.7951419867554425E-4 0.0 0.0 2.6012504959079736 0.0 30 1.7951419867554425E-4 0.0 0.0 2.7129083274841626 0.0 31 1.7951419867554425E-4 0.0 0.0 2.803203969417961 0.0 32 1.7951419867554425E-4 0.0 0.0 2.905706576861697 0.0 33 1.7951419867554425E-4 0.0 0.0 3.014312667060401 0.0 34 1.7951419867554425E-4 0.0 0.0 3.131445681696194 0.0 35 1.7951419867554425E-4 0.0 0.0 3.2576441633651014 0.0 36 1.7951419867554425E-4 0.0 0.0 3.3635575405836726 0.0 37 1.7951419867554425E-4 0.0 0.0 3.4829344827029094 0.0 38 1.7951419867554425E-4 0.0 0.0 3.6403684349413616 0.0 39 1.7951419867554425E-4 0.0 0.0 3.9178076289944155 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCCGC 40 6.8139343E-9 45.0 21 ATACGCG 20 7.033193E-4 45.0 1 GTTGCGA 30 2.1654414E-6 44.999996 2 CGTTTTT 7555 0.0 43.242886 1 CGGTCTA 320 0.0 42.1875 31 GTTTTTA 5360 0.0 41.893654 2 TAGAGTA 360 0.0 41.25 5 CACGACG 320 0.0 40.078125 26 CGACGGT 335 0.0 39.62686 28 TCACGAC 330 0.0 39.545456 25 GCGATAC 40 3.458099E-7 39.375 9 ACTCGAT 40 3.458099E-7 39.375 14 CTTGCGA 75 0.0 39.0 2 GAGCGAT 970 0.0 38.273197 7 CGCATGA 65 9.094947E-12 38.076927 2 AGGGGAA 6110 0.0 37.67185 8 TATTTTT 6310 0.0 37.547543 7 TTTACGA 60 1.5643309E-10 37.499996 2 TTTTATT 6430 0.0 37.476673 4 GCGCGAC 475 0.0 37.42105 9 >>END_MODULE