##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546892_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4249277 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.680212657353238 31.0 31.0 33.0 30.0 34.0 2 32.0345743522957 31.0 31.0 34.0 30.0 34.0 3 32.054425964699405 33.0 31.0 34.0 30.0 34.0 4 35.81443054900869 37.0 35.0 37.0 35.0 37.0 5 35.80035121268865 37.0 35.0 37.0 35.0 37.0 6 35.84916116318141 37.0 35.0 37.0 35.0 37.0 7 36.09349119862038 37.0 35.0 37.0 35.0 37.0 8 13.3515941653133 0.0 0.0 36.0 0.0 37.0 9 25.000428072822743 18.0 17.0 39.0 17.0 39.0 10 32.4558241319641 32.0 32.0 37.0 27.0 39.0 11 35.46411613081472 37.0 34.0 37.0 32.0 39.0 12 36.60387755375797 37.0 35.0 39.0 33.0 39.0 13 36.873235846945256 39.0 35.0 39.0 33.0 39.0 14 38.0429736635197 40.0 37.0 41.0 33.0 41.0 15 38.313876219413324 40.0 37.0 41.0 33.0 41.0 16 38.39266421087635 40.0 37.0 41.0 34.0 41.0 17 38.36742321105449 40.0 37.0 41.0 34.0 41.0 18 38.31324787722711 40.0 37.0 41.0 34.0 41.0 19 38.298770355521654 40.0 37.0 41.0 34.0 41.0 20 38.26663547704704 40.0 37.0 41.0 34.0 41.0 21 38.208691972775604 40.0 37.0 41.0 34.0 41.0 22 38.1552125220361 40.0 37.0 41.0 34.0 41.0 23 38.03162279135957 40.0 37.0 41.0 34.0 41.0 24 37.93750160321391 40.0 36.0 41.0 34.0 41.0 25 37.83003885131518 40.0 36.0 41.0 33.0 41.0 26 37.76687492954684 40.0 36.0 41.0 33.0 41.0 27 37.706813182572 40.0 36.0 41.0 33.0 41.0 28 37.63249230398489 40.0 36.0 41.0 33.0 41.0 29 37.620339413034266 40.0 36.0 41.0 33.0 41.0 30 37.52171251721175 40.0 36.0 41.0 33.0 41.0 31 37.45911339740855 40.0 36.0 41.0 33.0 41.0 32 37.30867133397046 40.0 35.0 41.0 33.0 41.0 33 37.16218782630551 40.0 35.0 41.0 32.0 41.0 34 36.97726483823013 40.0 35.0 41.0 31.0 41.0 35 36.850785674833624 40.0 35.0 41.0 31.0 41.0 36 36.73928082353775 40.0 35.0 41.0 31.0 41.0 37 36.682542230125264 40.0 35.0 41.0 31.0 41.0 38 36.58571822924229 40.0 35.0 41.0 30.0 41.0 39 36.51708514177824 40.0 35.0 41.0 30.0 41.0 40 36.41946076944384 39.0 35.0 41.0 30.0 41.0 41 36.36412006089507 39.0 35.0 41.0 30.0 41.0 42 36.31361946985334 39.0 35.0 41.0 30.0 41.0 43 36.2170849299775 39.0 35.0 41.0 30.0 41.0 44 35.99235022805056 39.0 35.0 41.0 29.0 41.0 45 35.90737765506932 39.0 35.0 40.0 29.0 41.0 46 35.89622752294096 39.0 35.0 40.0 29.0 41.0 47 35.862892910958735 39.0 35.0 40.0 29.0 41.0 48 35.792054742489135 38.0 35.0 40.0 28.0 41.0 49 35.69259711710957 38.0 35.0 40.0 28.0 41.0 50 35.59282202595877 38.0 35.0 40.0 28.0 41.0 51 35.23644563533985 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 8.0 13 12.0 14 19.0 15 58.0 16 144.0 17 398.0 18 1040.0 19 2162.0 20 4322.0 21 7366.0 22 12256.0 23 18765.0 24 29015.0 25 42364.0 26 53553.0 27 58398.0 28 60678.0 29 67197.0 30 82018.0 31 105253.0 32 139307.0 33 191698.0 34 289886.0 35 432056.0 36 450667.0 37 771367.0 38 999960.0 39 429218.0 40 88.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.46849358137867 22.80199666908041 28.627928939440757 15.101580810100165 2 32.89397231576101 24.723829489110734 29.595411172300608 12.786787022827648 3 29.58893948311678 24.52158331876223 32.795979174810206 13.09349802331079 4 26.067069762691393 26.787615869711484 31.795103025761794 15.35021134183533 5 23.00381923795507 31.60295269054006 30.79159113420942 14.601636937295451 6 20.56382768174445 40.561912061746035 28.27339803924291 10.600862217266608 7 86.18096678564376 4.066644749212631 8.062924586935614 1.689463878207987 8 32.88670049045991 63.27544662303728 2.841448086345042 0.996404800157768 9 82.66410968265896 4.231755190353558 9.68501229738612 3.4191228296013647 10 41.12744356275197 23.13883044103738 20.04955195907445 15.6841740371362 11 37.05804540395931 22.640510373882428 22.768249751663635 17.533194470494628 12 32.99855481297171 22.900813479563702 26.662771102001585 17.437860605462998 13 24.259609340600765 30.356811288132075 27.584433775439916 17.79914559582724 14 19.318133414225525 34.162352795546155 29.404155106857 17.115358683371312 15 18.575136429091348 24.617293718437278 39.81326705696052 16.99430279551086 16 21.260534439152824 20.840863045642823 38.63332515154931 19.265277363655038 17 20.55886213113431 21.136183873162423 29.762498420319506 28.542455575383762 18 23.31100090674249 23.860435551742096 32.50270575441422 20.325857787101196 19 26.746055858443686 25.432585355108646 27.486040566430475 20.335318220017193 20 27.715962033070568 25.49765524817516 25.835053822097265 20.951328896657007 21 24.723711822034666 26.660182426328056 29.148182149575092 19.467923602062186 22 23.11910943908811 23.621853788303284 28.736559184068255 24.522477588540355 23 20.662385624660384 28.466395577412346 28.351105376279307 22.520113421647963 24 21.554725662742154 26.065351823380777 33.46253962732955 18.917382886547525 25 21.36739967763928 24.882515307898263 32.215904023202064 21.534180991260396 26 19.661674209518466 29.035292356793875 28.894256599416796 22.408776834270867 27 20.365982260040944 28.13175041307027 30.60861883092112 20.893648495967668 28 17.953807200613188 27.41939393454463 34.71482325110837 19.91197561373382 29 19.530098885057388 26.696000284283656 33.4574093428129 20.31649148784605 30 21.388085549612324 26.979201402968084 31.668846253139066 19.963866794280534 31 26.612386060028566 25.39441415563165 27.13155673306306 20.861643051276722 32 25.658011939442876 26.86435833672411 28.032274666960994 19.445355056872028 33 24.67928073411077 25.690511585853308 27.73928364754757 21.89092403248835 34 20.2658946451361 28.078517827856363 29.545167330818867 22.110420196188667 35 19.89898516853573 26.126915237580416 30.16870870032714 23.805390893556716 36 25.30277503678861 27.472979520986744 27.31775311423567 19.90649232798897 37 21.357798044231995 29.783466693275113 27.634677616921653 21.224057645571236 38 21.511730113146307 30.757655949470937 25.000676585687398 22.72993735169536 39 21.02094073885981 28.100945172555235 26.890715761763705 23.987398326821243 40 22.82002326513428 25.727223713587037 27.723139724710816 23.729613296567862 41 19.99260109425674 24.96987134517237 28.62143371684171 26.416093843729183 42 21.82827808118887 27.556970279885263 26.174405669482127 24.440345969443744 43 21.902761340340955 26.731935809315328 26.870100490036304 24.49520236030741 44 21.521590614120946 28.407326705225383 28.159049174718433 21.912033505935245 45 21.04878076905789 29.96796866855232 26.250724535020897 22.73252602736889 46 23.285231817083236 28.575967158648403 27.27487523171589 20.86392579255247 47 22.468128107440393 27.42090007311832 27.811978367143396 22.298993452297886 48 22.33963566037234 26.436191380321876 28.593593686643633 22.63057927266215 49 21.674322478859345 25.2600148213449 29.920219369083256 23.145443330712496 50 20.560744804351422 28.11772449760277 28.855826532372447 22.465704165673362 51 20.461292591657358 28.971446201318486 27.317188312270535 23.250072894753625 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2582.0 1 4576.5 2 6571.0 3 31703.5 4 56836.0 5 39024.5 6 21213.0 7 21087.5 8 20962.0 9 21539.0 10 22116.0 11 21971.5 12 21827.0 13 20872.5 14 19918.0 15 18979.5 16 18041.0 17 17029.0 18 16017.0 19 16059.5 20 16102.0 21 16452.5 22 16803.0 23 18681.5 24 20560.0 25 23386.5 26 30578.5 27 34944.0 28 42160.5 29 49377.0 30 56770.5 31 64164.0 32 73020.0 33 81876.0 34 93949.5 35 106023.0 36 123835.0 37 141647.0 38 173943.0 39 206239.0 40 248871.5 41 291504.0 42 318469.5 43 345435.0 44 360183.0 45 374931.0 46 379116.5 47 383302.0 48 370170.0 49 357038.0 50 340540.0 51 324042.0 52 300150.5 53 276259.0 54 253733.0 55 231207.0 56 212971.0 57 194735.0 58 178236.0 59 161737.0 60 141305.0 61 120873.0 62 101754.5 63 82636.0 64 67315.5 65 51995.0 66 41905.5 67 31816.0 68 26297.0 69 20778.0 70 17337.0 71 13896.0 72 11150.0 73 8404.0 74 6439.0 75 3358.0 76 2242.0 77 1670.0 78 1098.0 79 765.5 80 433.0 81 336.5 82 240.0 83 179.5 84 119.0 85 72.5 86 26.0 87 18.5 88 11.0 89 7.0 90 3.0 91 3.5 92 4.0 93 4.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4249277.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.4825286381496 #Duplication Level Percentage of deduplicated Percentage of total 1 77.60309492236219 15.895076141563253 2 6.840178097790547 2.802082875560771 3 2.571662478545163 1.5802245109336823 4 1.4480444159230017 1.1863844487382196 5 0.9598460080112006 0.9830036673651492 6 0.6590238853498435 0.8099085362941673 7 0.5807847923179744 0.8327158798878274 8 0.48545087499460876 0.7954609159593484 9 0.41628339498896627 0.767388290350288 >10 5.996232516027375 30.15931230716264 >50 1.9060992206162333 27.190108942383905 >100 0.5256121043388422 14.547950237246429 >500 0.004658962869160631 0.6589734990726268 >1k 0.002678903649736322 0.8341542391889171 >5k 1.1647407172766618E-4 0.1621071944884511 >10k+ 2.3294814345533235E-4 0.7951483138042788 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21473 0.5053330248887047 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11857 0.2790357041915601 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6795 0.15990955637864981 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3533415213929333E-5 0.0 0.0 0.009601633407283169 0.0 2 2.3533415213929333E-5 0.0 0.0 0.039324336822475915 0.0 3 2.3533415213929333E-5 0.0 0.0 0.06471689183830567 0.0 4 2.3533415213929333E-5 0.0 0.0 0.103900028169498 0.0 5 2.3533415213929333E-5 0.0 0.0 0.20379937575262805 0.0 6 2.3533415213929333E-5 0.0 0.0 0.33881057883494065 0.0 7 2.3533415213929333E-5 0.0 0.0 0.43134396745611076 0.0 8 2.3533415213929333E-5 0.0 0.0 0.6583002237792452 0.0 9 2.3533415213929333E-5 0.0 0.0 0.9340883166712831 0.0 10 2.3533415213929333E-5 0.0 0.0 1.3975318624791935 0.0 11 2.3533415213929333E-5 0.0 0.0 1.6956531664092502 0.0 12 2.3533415213929333E-5 0.0 0.0 1.9863849779621334 0.0 13 2.3533415213929333E-5 0.0 0.0 2.1093235390397003 0.0 14 2.3533415213929333E-5 0.0 0.0 2.1584848434215984 0.0 15 2.3533415213929333E-5 0.0 0.0 2.2234370694120433 0.0 16 2.3533415213929333E-5 0.0 0.0 2.3703091137621763 0.0 17 2.3533415213929333E-5 0.0 0.0 2.5288066652279904 0.0 18 2.3533415213929333E-5 0.0 0.0 2.784379554451263 0.0 19 2.3533415213929333E-5 0.0 0.0 2.88599684134501 0.0 20 2.3533415213929333E-5 0.0 0.0 3.000792840758557 0.0 21 2.3533415213929333E-5 0.0 0.0 3.1521597674145507 0.0 22 2.3533415213929333E-5 0.0 0.0 3.3120693237932004 0.0 23 2.3533415213929333E-5 0.0 0.0 3.4938649563208046 0.0 24 2.3533415213929333E-5 0.0 0.0 3.631653102398361 0.0 25 2.3533415213929333E-5 0.0 0.0 3.7531090583174502 0.0 26 2.3533415213929333E-5 0.0 0.0 3.872094005639077 0.0 27 2.3533415213929333E-5 0.0 0.0 3.9938323625407333 0.0 28 4.7066830427858666E-5 0.0 0.0 4.130208503705454 0.0 29 4.7066830427858666E-5 0.0 0.0 4.276374545599169 0.0 30 4.7066830427858666E-5 0.0 0.0 4.4524515582297886 0.0 31 4.7066830427858666E-5 0.0 0.0 4.611207977262955 0.0 32 4.7066830427858666E-5 0.0 0.0 4.76233956976681 0.0 33 4.7066830427858666E-5 0.0 0.0 4.928108946533728 0.0 34 7.0600245641788E-5 0.0 0.0 5.0972200682610245 0.0 35 7.0600245641788E-5 0.0 0.0 5.2793451686016235 0.0 36 7.0600245641788E-5 0.0 0.0 5.441019731121318 0.0 37 7.0600245641788E-5 0.0 0.0 5.605424169805828 0.0 38 7.0600245641788E-5 0.0 0.0 5.797527438197133 0.0 39 7.0600245641788E-5 0.0 0.0 6.0382272090052025 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 20185 0.0 43.227646 1 CGACGGT 930 0.0 40.64516 28 ATACGCG 50 1.0822987E-9 40.5 1 TATAGCG 235 0.0 40.212765 1 TCACGAC 955 0.0 40.052357 25 GTTTTTA 14650 0.0 39.993176 2 CCAGTCG 465 0.0 39.67742 28 AGGGGAA 29070 0.0 39.496906 8 GAGGGGA 28855 0.0 39.245365 7 CACGACG 970 0.0 38.737114 26 CGTCGTC 35 6.2522686E-6 38.57143 17 CGCATCG 480 0.0 38.437504 21 GAGCGAT 3340 0.0 38.330837 7 CGGTCTA 985 0.0 38.14721 31 TATCACG 65 9.094947E-12 38.076927 1 AGACTTA 3840 0.0 37.968754 8 AGCGATC 375 0.0 37.8 8 TTAGTCG 60 1.5643309E-10 37.500004 1 TTTGCGA 600 0.0 37.5 2 GACGGTC 1005 0.0 37.388058 29 >>END_MODULE