##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546889_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3309248 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70449721507726 31.0 31.0 34.0 30.0 34.0 2 32.056141153518865 33.0 31.0 34.0 30.0 34.0 3 31.991029986268785 33.0 31.0 34.0 30.0 34.0 4 35.803018389676446 37.0 35.0 37.0 35.0 37.0 5 35.8225022724196 37.0 35.0 37.0 35.0 37.0 6 35.87531457297851 37.0 35.0 37.0 35.0 37.0 7 36.11967311002379 37.0 35.0 37.0 35.0 37.0 8 13.296638692536794 0.0 0.0 36.0 0.0 37.0 9 24.986928752393293 18.0 17.0 39.0 17.0 39.0 10 32.48101502214401 32.0 32.0 37.0 27.0 39.0 11 35.5443520703193 37.0 34.0 37.0 32.0 39.0 12 36.73618145270466 38.0 35.0 39.0 33.0 39.0 13 36.99488131442551 39.0 37.0 39.0 33.0 39.0 14 38.18646562602742 40.0 37.0 41.0 33.0 41.0 15 38.443841319840644 40.0 38.0 41.0 34.0 41.0 16 38.51258926499313 40.0 38.0 41.0 34.0 41.0 17 38.50801813584234 40.0 38.0 41.0 34.0 41.0 18 38.43863409451332 40.0 38.0 41.0 34.0 41.0 19 38.382063538302354 40.0 37.0 41.0 34.0 41.0 20 38.306054426866766 40.0 37.0 41.0 34.0 41.0 21 38.25355246871797 40.0 37.0 41.0 34.0 41.0 22 38.20489791034096 40.0 37.0 41.0 34.0 41.0 23 38.02127824810954 40.0 36.0 41.0 34.0 41.0 24 37.76429237095557 40.0 35.0 41.0 34.0 41.0 25 37.64960196395072 39.0 35.0 41.0 33.0 41.0 26 37.59503669715899 40.0 35.0 41.0 33.0 41.0 27 37.54171823930996 39.0 35.0 41.0 33.0 41.0 28 37.45226196404742 39.0 35.0 41.0 33.0 41.0 29 37.39200265437948 40.0 35.0 41.0 33.0 41.0 30 37.24462596940453 39.0 35.0 41.0 33.0 41.0 31 37.085984187344074 40.0 35.0 41.0 32.0 41.0 32 36.80326164735916 40.0 35.0 41.0 31.0 41.0 33 36.47532823167076 40.0 35.0 41.0 30.0 41.0 34 36.11722995677568 40.0 35.0 41.0 29.0 41.0 35 35.83745974916356 40.0 35.0 41.0 25.0 41.0 36 35.66490725385344 39.0 35.0 41.0 24.0 41.0 37 35.57888589794418 39.0 35.0 41.0 24.0 41.0 38 35.468339937049144 39.0 35.0 41.0 23.0 41.0 39 35.3816870177152 39.0 35.0 41.0 23.0 41.0 40 35.28944038041271 39.0 35.0 41.0 23.0 41.0 41 35.21153869398727 39.0 35.0 41.0 23.0 41.0 42 35.154288527182004 39.0 35.0 41.0 22.0 41.0 43 35.057141380760825 39.0 35.0 41.0 22.0 41.0 44 34.82756112566964 39.0 35.0 40.0 20.0 41.0 45 34.74903029328718 38.0 34.0 40.0 20.0 41.0 46 34.73872311775968 38.0 34.0 40.0 20.0 41.0 47 34.702972095170864 38.0 34.0 40.0 20.0 41.0 48 34.6186317858317 38.0 34.0 40.0 20.0 41.0 49 34.53436641798983 38.0 34.0 40.0 20.0 41.0 50 34.42895274092483 38.0 34.0 40.0 20.0 41.0 51 34.093402791208156 38.0 34.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 0.0 12 3.0 13 5.0 14 22.0 15 43.0 16 164.0 17 440.0 18 1052.0 19 2356.0 20 4589.0 21 8251.0 22 13624.0 23 22657.0 24 36606.0 25 56873.0 26 70607.0 27 70275.0 28 63326.0 29 60755.0 30 67534.0 31 82058.0 32 104711.0 33 142890.0 34 211028.0 35 318224.0 36 331503.0 37 564518.0 38 745136.0 39 329914.0 40 80.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.872844827586203 22.671041880209643 26.698119935405263 19.757993356798885 2 36.681082832111706 23.202219960546927 28.730787175817586 11.385910031523778 3 27.459592028158664 23.204788519929604 37.05947695669832 12.276142495213413 4 23.722035942909084 25.703211122285186 36.44072611058464 14.134026824221092 5 21.59717252983155 29.999081362291374 34.8530844469801 13.550661660896976 6 19.31082227744793 38.557128386872186 31.896491287446576 10.235558048233315 7 81.5287340205388 3.6454505676214053 13.295800133444214 1.530015278395575 8 31.032971841336764 63.37258494981337 4.74503573017193 0.8494074786779352 9 77.97883386195292 3.996466871023266 14.59443353897925 3.430265728044559 10 35.902839557506724 20.673155955673312 26.007540081613705 17.41646440520626 11 33.27728837488154 20.616194374069273 27.62899607403253 18.47752117701665 12 30.73538157309455 21.519964656622896 30.934308942696347 16.810344827586206 13 23.229023633163788 28.649681136016405 31.796589436633337 16.32470579418647 14 19.342581758756065 32.086141624925055 32.549419082522675 16.021857533796197 15 17.695198425745062 24.35423395284971 42.31323853636839 15.637329085036841 16 19.567587560678437 20.88317345813913 41.2886250894463 18.26061389173613 17 19.480045013247725 20.391581410640725 33.689980321813294 26.43839325429826 18 21.74010530489102 23.740287823698917 36.03368499429478 18.485921877115285 19 24.169448769025472 25.113681416442645 31.726241127893708 18.99062868663817 20 25.114648403504365 24.92451457249502 30.76227590074845 19.19856112325217 21 22.718605556307654 25.48548794167134 33.73026137660278 18.06564512541822 22 20.848180613843386 22.299597975129092 33.63150782292533 23.22071358810219 23 18.902451553948207 27.560672394453363 32.54518851412768 20.99168753747075 24 19.518905805790318 26.209670595857425 36.463903581720075 17.80752001663218 25 19.68676871603458 25.060829529850892 35.291522424429964 19.96087932968457 26 18.456489208424394 28.191268832073025 31.928462297174466 21.42377966232812 27 18.704612044790842 27.25604125166805 34.45492752431972 19.58441917922138 28 16.966815421509658 26.882300752315935 38.09258175875607 18.05830206741834 29 17.93410466667956 26.642790144467867 36.61674797416211 18.80635721469047 30 19.855961233488696 26.16506831763591 35.79704512928617 18.181925319589222 31 24.923547585433305 24.50191100818071 31.005019871584118 19.569521534801865 32 23.94169309764635 26.82032292532926 31.209567853482124 18.028416123542268 33 22.86746112712012 25.88062302976386 30.672859815885662 20.579056027230354 34 19.45599121008761 27.55807361672501 32.033078209913555 20.95285696327383 35 19.694353520799893 26.685216701800528 31.95306003055679 21.667369746842787 36 25.511777902411666 26.821743187576153 28.865409905815458 18.801069004196723 37 20.865374852534472 29.351381341017657 29.59297701471754 20.190266791730327 38 20.81342951631307 31.26686183688862 26.760369727503047 21.15933891929526 39 20.325312578567697 28.554493347129018 28.34486868315702 22.775325391146268 40 21.953446825381477 26.403370191656833 29.442610526621156 22.200572456340534 41 19.560576904481017 25.95586671050341 30.070215348018642 24.413341036996925 42 21.348838165045354 28.274369282688998 27.80677060165935 22.5700219506063 43 21.07025523623494 27.745699325043034 28.034949329877968 23.149096108844063 44 20.838117904732435 28.983019707196316 29.38347322412826 20.795389163942986 45 20.61688939601988 30.15280208675808 27.94553324501518 21.284775272206858 46 22.458576691743865 28.500130543253334 29.255377656796956 19.785915108205852 47 21.966470932368924 28.18812612412246 28.874022134333842 20.97138080917477 48 21.39195974432862 27.974331328446826 29.299254694722183 21.33445423250237 49 21.16713525248032 25.957045225984878 30.64406173245402 22.231757789080785 50 20.324224718123272 28.30860666834278 30.210216943547298 21.156951669986658 51 19.851791101785057 29.672753447308875 28.903877859864235 21.571577591041834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2241.0 1 3618.0 2 4995.0 3 47857.5 4 90720.0 5 61756.0 6 32792.0 7 32741.0 8 32690.0 9 33538.5 10 34387.0 11 34345.5 12 34304.0 13 33205.5 14 32107.0 15 30607.0 16 29107.0 17 27670.5 18 26234.0 19 24691.5 20 23149.0 21 22272.0 22 21395.0 23 21762.0 24 22129.0 25 23727.5 26 28032.0 27 30738.0 28 35477.5 29 40217.0 30 45776.5 31 51336.0 32 60056.5 33 68777.0 34 76759.0 35 84741.0 36 97270.5 37 109800.0 38 132026.0 39 154252.0 40 182462.5 41 210673.0 42 227695.5 43 244718.0 44 255147.5 45 265577.0 46 275619.5 47 285662.0 48 281242.0 49 276822.0 50 263515.0 51 250208.0 52 227685.5 53 205163.0 54 187599.0 55 170035.0 56 153083.5 57 136132.0 58 120440.0 59 104748.0 60 89724.5 61 74701.0 62 63248.5 63 51796.0 64 41255.0 65 30714.0 66 24197.0 67 17680.0 68 14935.5 69 12191.0 70 10380.5 71 8570.0 72 7145.0 73 5720.0 74 4510.5 75 2488.5 76 1676.0 77 1307.0 78 938.0 79 712.5 80 487.0 81 337.0 82 187.0 83 123.0 84 59.0 85 43.5 86 28.0 87 21.5 88 15.0 89 10.5 90 6.0 91 4.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3309248.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.45787367277369 #Duplication Level Percentage of deduplicated Percentage of total 1 75.66629533284744 19.263029878704156 2 7.056913625608797 3.5930803120084827 3 3.0432191040716696 2.3242166253008434 4 1.8155749417265106 1.8488271003970786 5 1.2920628563023542 1.644658648651424 6 1.048384454157649 1.6013783396667136 7 0.8493231210079493 1.5135372505390379 8 0.6830278387281099 1.3910749146662291 9 0.6105051028027979 1.3987945605363612 >10 6.768158907951694 38.714575736060816 >50 0.9899140115795781 16.87307094620757 >100 0.16830824147150805 6.1114020859068345 >500 0.005662111622675422 0.9722141958372452 >1k 0.0024094092011374218 0.9543033727968908 >5k 0.0 0.0 >10k+ 2.4094092011374218E-4 1.7958360327202068 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37619 1.1367839460808014 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20936 0.632651285125805 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3971 0.11999705068946177 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007917206567776123 0.0 2 0.0 0.0 0.0 0.03284734175256735 0.0 3 0.0 0.0 0.0 0.05729398340650202 0.0 4 0.0 0.0 0.0 0.08923477478871333 0.0 5 0.0 0.0 0.0 0.17726081575028527 0.0 6 0.0 0.0 0.0 0.2995846790569942 0.0 7 0.0 0.0 0.0 0.3805698454754675 0.0 8 0.0 0.0 0.0 0.5430236718432707 0.0 9 0.0 0.0 0.0 0.7961627535923569 0.0 10 0.0 0.0 0.0 1.1977041309687277 0.0 11 0.0 0.0 0.0 1.4582467074090548 0.0 12 0.0 0.0 0.0 1.700809368170654 0.0 13 0.0 0.0 0.0 1.8021919179221382 0.0 14 0.0 0.0 0.0 1.8499066857485447 0.0 15 0.0 0.0 0.0 1.9037859960933723 0.0 16 0.0 0.0 0.0 2.0130253157212756 0.0 17 0.0 0.0 0.0 2.1377364283365887 0.0 18 0.0 0.0 0.0 2.3418915717407702 0.0 19 0.0 0.0 0.0 2.4262914112209177 0.0 20 0.0 0.0 0.0 2.52483343647862 0.0 21 0.0 0.0 0.0 2.6447398321310462 0.0 22 0.0 0.0 0.0 2.7727447444253195 0.0 23 0.0 0.0 0.0 2.9192432842748564 0.0 24 0.0 0.0 0.0 3.028663913976831 0.0 25 0.0 0.0 0.0 3.130439302222136 0.0 26 0.0 0.0 0.0 3.2323960005415127 0.0 27 0.0 0.0 0.0 3.343085800761986 0.0 28 0.0 0.0 0.0 3.4616021525131995 0.0 29 0.0 0.0 0.0 3.5881263658692246 0.0 30 0.0 0.0 0.0 3.74641006053339 0.0 31 0.0 0.0 0.0 3.881153663913977 0.0 32 0.0 0.0 0.0 4.008070715763823 0.0 33 0.0 0.0 0.0 4.145443315218443 0.0 34 0.0 0.0 0.0 4.2869860463766996 0.0 35 3.0218345678534822E-5 0.0 0.0 4.4488052874852535 0.0 36 3.0218345678534822E-5 0.0 0.0 4.592886359680508 0.0 37 3.0218345678534822E-5 0.0 0.0 4.743434157850968 0.0 38 3.0218345678534822E-5 0.0 0.0 4.908698290366875 0.0 39 3.0218345678534822E-5 0.0 0.0 5.144310731622411 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 34135 0.0 44.077194 1 TTCGCGA 145 0.0 43.448273 2 ACGTGCG 110 0.0 42.954548 1 GTTTTTA 22755 0.0 42.419247 2 AGACTTA 3220 0.0 41.29658 8 AATCGCG 120 0.0 41.250004 1 CGCATCG 365 0.0 40.684933 21 TGCGAGT 570 0.0 40.263157 4 TTAACGA 185 0.0 40.135136 2 CGACGGT 550 0.0 40.090908 28 CTACGCG 45 1.9301297E-8 40.0 1 GAGGGGA 20380 0.0 39.943573 7 CGAGGAT 425 0.0 39.705883 6 TATGCGA 210 0.0 39.642857 2 CTTGCGA 210 0.0 39.642857 2 AGCGATC 330 0.0 39.545452 8 AGGGGAA 20730 0.0 39.442833 8 TAACGCG 40 3.4608456E-7 39.375 1 TTATTTT 25200 0.0 39.294643 6 GCGCGAC 985 0.0 39.289337 9 >>END_MODULE