SRR1546888_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546888_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1563555
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14056	0.8989770107223602	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7830	0.5007818720799716	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG	2565	0.16404923395723206	No Hit
GAATCTGACTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	2386	0.1526009638292225	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1733	0.11083716274771274	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	1592	0.10181925164129181	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGATTA	20	7.034068E-4	45.0	13
ACGCGTA	20	7.034068E-4	45.0	21
CGTTTTT	11125	0.0	43.220226	1
GTTTTTA	7840	0.0	41.90051	2
CGTTGAG	255	0.0	39.705883	3
GCGCGAC	530	0.0	39.481133	9
CGTTAGA	120	0.0	39.375004	2
CGGTCTA	285	0.0	38.68421	31
TCGTTAG	70	0.0	38.57143	1
CTTGCGA	105	0.0	38.57143	2
TGAATCG	35	6.249733E-6	38.57143	1
CGATGAA	1070	0.0	38.27103	19
GAGGGGA	9210	0.0	38.257328	7
AGGGGAA	9345	0.0	38.113964	8
AGACTTA	1335	0.0	37.92135	8
CGTAAGA	60	1.5643309E-10	37.500004	2
TAAGCGA	120	0.0	37.500004	2
CACGACG	300	0.0	37.5	26
GAGCGAT	1350	0.0	37.166668	7
CGTGGCG	545	0.0	37.155964	27