SRR1546887_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546887_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2513833
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34409	1.3687862320209816	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19168	0.7625009298549267	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2760	0.10979249616024613	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	25945	43.439007	1
CGGTCTA	575	43.043476	31
GTTTTTA	17970	42.082638	2
TATGCGA	215	40.813953	2
CGACGGT	615	40.609756	28
ACGGTCT	625	39.96	30
GAGCGAT	2250	39.3	7
CACGACG	645	39.069767	26
TAACGCC	255	38.82353	12
TTATTTT	20315	38.74231	6
TATTTTT	20415	38.475388	7
ACGACGG	650	38.423077	27
TTTTATT	20725	38.20386	4
TTTATTT	20815	37.88734	5
AGACTTA	1840	37.785324	8
TTTTTAT	20985	37.612583	3
TCACGAC	680	37.058823	25
ATACGAG	425	37.058823	3
ATAACGC	275	36.818184	11
GACGGTC	680	36.72794	29