##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546885_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 611320 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.632325132500164 31.0 31.0 34.0 30.0 34.0 2 31.96863835634365 31.0 31.0 34.0 30.0 34.0 3 31.908565072302558 31.0 31.0 34.0 30.0 34.0 4 35.73431917817182 37.0 35.0 37.0 35.0 37.0 5 35.74937839429431 37.0 35.0 37.0 35.0 37.0 6 35.7959219394098 37.0 35.0 37.0 35.0 37.0 7 36.00867139959432 37.0 35.0 37.0 35.0 37.0 8 13.28379408493097 0.0 0.0 35.0 0.0 37.0 9 24.86757181181705 18.0 17.0 38.0 17.0 39.0 10 32.532902571484655 32.0 32.0 37.0 27.0 39.0 11 35.47323333115226 37.0 34.0 37.0 32.0 39.0 12 36.6271461754891 37.0 35.0 39.0 33.0 39.0 13 36.9290780605902 39.0 37.0 39.0 33.0 39.0 14 38.13627069292678 40.0 37.0 41.0 33.0 41.0 15 38.376671792187395 40.0 38.0 41.0 34.0 41.0 16 38.43888470849964 40.0 38.0 41.0 34.0 41.0 17 38.3926650526729 40.0 38.0 41.0 34.0 41.0 18 38.30544559314271 40.0 37.0 41.0 33.0 41.0 19 38.24227409540012 40.0 37.0 41.0 34.0 41.0 20 38.160968069096384 40.0 37.0 41.0 34.0 41.0 21 38.10499083949486 40.0 37.0 41.0 33.0 41.0 22 38.04939148073022 40.0 36.0 41.0 33.0 41.0 23 37.87204900870248 39.0 36.0 41.0 33.0 41.0 24 37.624838055355625 39.0 35.0 41.0 33.0 41.0 25 37.49586141464372 39.0 35.0 41.0 33.0 41.0 26 37.412360138716224 39.0 35.0 41.0 33.0 41.0 27 37.3647974874043 39.0 35.0 41.0 33.0 41.0 28 37.21551724137931 39.0 35.0 41.0 33.0 41.0 29 37.14776221945953 39.0 35.0 41.0 32.0 41.0 30 36.998020676568736 39.0 35.0 41.0 32.0 41.0 31 36.87127036576588 39.0 35.0 41.0 31.0 41.0 32 36.59207943466597 39.0 35.0 41.0 31.0 41.0 33 36.283332788065174 39.0 35.0 41.0 30.0 41.0 34 35.93744683635412 39.0 35.0 41.0 27.0 41.0 35 35.67578355035006 39.0 35.0 41.0 25.0 41.0 36 35.49906104822352 39.0 35.0 41.0 24.0 41.0 37 35.4154174573055 39.0 35.0 41.0 24.0 41.0 38 35.296116600143954 39.0 35.0 41.0 23.0 41.0 39 35.18117679774913 39.0 35.0 41.0 23.0 41.0 40 35.056934175227376 39.0 35.0 40.0 23.0 41.0 41 34.95377052934633 38.0 35.0 40.0 22.0 41.0 42 34.86952823398548 38.0 34.0 40.0 22.0 41.0 43 34.76100732840411 38.0 34.0 40.0 21.0 41.0 44 34.557629392135055 38.0 34.0 40.0 21.0 41.0 45 34.47109369888111 38.0 34.0 40.0 20.0 41.0 46 34.42059968592554 38.0 34.0 40.0 20.0 41.0 47 34.35488287639861 38.0 34.0 40.0 20.0 41.0 48 34.263356343649804 38.0 34.0 40.0 20.0 41.0 49 34.163348164627365 37.0 33.0 40.0 20.0 41.0 50 34.04985932081398 37.0 33.0 40.0 20.0 41.0 51 33.69881077013675 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 6.0 15 22.0 16 42.0 17 118.0 18 273.0 19 567.0 20 962.0 21 1735.0 22 2668.0 23 4269.0 24 6619.0 25 10027.0 26 12790.0 27 13300.0 28 12748.0 29 12501.0 30 13697.0 31 16825.0 32 21511.0 33 28440.0 34 41528.0 35 60293.0 36 66920.0 37 105530.0 38 123921.0 39 53984.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.515474710462605 20.756559575999475 24.24344042400052 20.484525289537395 2 38.62118039651901 22.73817313354708 25.751161421186943 12.889485048746973 3 28.629522999411112 23.850193024929663 34.73107374206635 12.789210233592883 4 25.837531898187528 24.94798141726101 34.135804488647516 15.078682195903944 5 22.595858143034743 28.962899954197475 33.033763004645685 15.407478898122095 6 20.249787345416475 37.80524111758163 31.558430936334492 10.38654060066741 7 77.95688019367925 4.710299025060525 14.800759013282732 2.5320617679774915 8 29.202708892233197 63.84414054832166 5.412386311588039 1.5407642478570962 9 71.96558267355886 6.234050906235686 16.816070143296475 4.984296276908983 10 38.35928809788654 25.548975986390104 22.13259831184977 13.959137603873584 11 32.090558136491524 22.81701890989989 29.0718445331414 16.020578420467185 12 28.200124321141136 20.954328338676962 33.47395799254073 17.37158934764117 13 23.13092979127135 25.16603415559772 34.18455146240921 17.518484590721716 14 18.25705031734607 28.93901720866322 34.94143819930642 17.86249427468429 15 17.5371327618923 22.819799777530587 41.8762677484787 17.76679971209841 16 20.67984034548191 20.993260485506774 39.28875220833606 19.03814696067526 17 20.518059281554667 21.0506772230583 33.74648302034941 24.684780475037623 18 23.163318720146567 22.397598639010667 34.41650853889943 20.022574101943334 19 25.309657789700974 24.22642805731859 30.776843551658708 19.68707060132173 20 26.542890793692337 23.5079827259046 30.04841981286397 19.900706667539094 21 24.46361970817248 24.864882549237716 31.902604200745927 18.76889354184388 22 22.604200745926846 22.496728391022707 31.9106196427403 22.98845122031015 23 21.490872210953345 25.92570176012563 31.01239939802395 21.571026630897077 24 21.261532421644965 23.87980108617418 34.71389779493555 20.144768697245304 25 21.87757639206962 24.11306680625532 32.924654845252896 21.08470195642217 26 20.028299417653603 25.736112019891383 31.816233723745334 22.419354838709676 27 21.357717725577437 23.983183929856704 33.403454819080025 21.255643525485834 28 19.507132107570506 24.675129228554603 35.47650984754302 20.34122881633187 29 20.58185565661192 24.917555453772163 34.03487535169796 20.46571353791795 30 21.51949878950468 24.060721062618594 33.83318065824773 20.586599489629 31 25.08457109206308 22.918929529542627 30.870247987960482 21.126251390433815 32 25.17208663220572 23.884381338742394 31.05165870575149 19.8918733233004 33 23.845776352810315 24.32866583785906 30.621605705686054 21.20395210364457 34 20.856016488909248 25.602139632271154 32.22780213308905 21.31404174573055 35 21.278054046980305 25.301805928155467 32.15893476411699 21.261205260747236 36 24.12173657004515 26.638585356278217 29.000687037885232 20.2389910357914 37 21.623699535431527 27.725904599882224 29.05843093633449 21.591964928351764 38 21.699764444153637 28.67745207092848 27.50932408558529 22.11345939933259 39 21.889190603939017 26.326473859844274 28.12585879735654 23.65847673886017 40 23.444513511745075 24.781129359418962 29.50844075116142 22.26591637767454 41 20.48436170908853 24.913302362101682 29.71945953019695 24.882876398612837 42 22.368644899561605 26.418406072106258 28.097722960151806 23.11522606818033 43 22.510469148727346 26.04217103971733 28.310868285022572 23.136491526532748 44 22.236471896878886 27.047372897991234 29.211705816920762 21.50444938820912 45 21.46289995419747 27.47693515671007 28.238565726624355 22.8215991624681 46 22.89766407119021 27.004187659490935 28.610384086893937 21.487764182424918 47 21.994863573905647 26.496761107112476 29.838382516521627 21.66999280246025 48 22.17300268271936 25.49106850749198 29.895308512726558 22.440620297062093 49 21.700091605051362 24.893181966891316 30.47307465811686 22.933651769940457 50 20.11908656677354 26.877739972518484 31.18530393247399 21.817869528233985 51 20.840803507164825 26.84764116992737 29.187986651835374 23.123568671072434 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 510.0 1 930.0 2 1350.0 3 9871.0 4 18392.0 5 12438.0 6 6484.0 7 6361.5 8 6239.0 9 6160.0 10 6081.0 11 5950.5 12 5820.0 13 5593.0 14 5366.0 15 5104.0 16 4842.0 17 4535.0 18 4228.0 19 4051.5 20 3875.0 21 3798.5 22 3722.0 23 3781.5 24 3841.0 25 4476.0 26 5510.5 27 5910.0 28 6720.5 29 7531.0 30 8793.0 31 10055.0 32 10758.5 33 11462.0 34 12432.5 35 13403.0 36 15362.0 37 17321.0 38 20557.5 39 23794.0 40 27581.0 41 31368.0 42 35152.5 43 38937.0 44 41826.5 45 44716.0 46 44410.5 47 44105.0 48 43106.0 49 42107.0 50 40403.0 51 38699.0 52 36943.5 53 35188.0 54 34082.5 55 32977.0 56 31737.0 57 30497.0 58 28865.0 59 27233.0 60 25074.0 61 22915.0 62 20735.5 63 18556.0 64 15936.0 65 13316.0 66 11197.5 67 9079.0 68 7712.5 69 6346.0 70 5322.0 71 4298.0 72 3507.0 73 2716.0 74 2080.5 75 1085.5 76 726.0 77 554.0 78 382.0 79 286.0 80 190.0 81 143.5 82 97.0 83 75.5 84 54.0 85 33.5 86 13.0 87 12.0 88 11.0 89 8.0 90 5.0 91 5.0 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 611320.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.22181928003315 #Duplication Level Percentage of deduplicated Percentage of total 1 68.47115571915461 30.27919074107463 2 9.785502319860354 8.654654303064193 3 5.762108281822769 7.644327333322465 4 4.173397017198197 7.382208347134724 5 2.982809564157152 6.5952632746456015 6 2.2104678837787906 5.86505467684698 7 1.6711662051996072 5.173140693926507 8 1.27519731862431 4.5113236296469665 9 0.925698660159485 3.684247097160741 >10 2.6949195275212103 15.954830342778406 >50 0.029735940082982713 0.9237715813993342 >100 0.015983066352973675 1.1956430644389697 >500 0.0011150976525330263 0.27006345269084464 >1k 3.7169921751100874E-4 0.6563380198384314 >5k 3.7169921751100874E-4 1.209943442031228 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7361 1.204115684093437 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3993 0.6531767323169535 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6358044886475169E-4 0.0 0.0 0.0098148269318851 0.0 2 1.6358044886475169E-4 0.0 0.0 0.04940129555715501 0.0 3 1.6358044886475169E-4 0.0 0.0 0.08833344238696592 0.0 4 1.6358044886475169E-4 0.0 0.0 0.15049401295557155 0.0 5 1.6358044886475169E-4 0.0 0.0 0.3144016227180527 0.0 6 1.6358044886475169E-4 0.0 0.0 0.5394883203559511 0.0 7 1.6358044886475169E-4 0.0 0.0 0.6875286265785513 0.0 8 1.6358044886475169E-4 0.0 0.0 0.9827913367794281 0.0 9 1.6358044886475169E-4 0.0 0.0 1.4197147156971799 0.0 10 1.6358044886475169E-4 0.0 0.0 2.07518157429824 0.0 11 1.6358044886475169E-4 0.0 0.0 2.3686448995616045 0.0 12 1.6358044886475169E-4 0.0 0.0 2.6886082575410586 0.0 13 1.6358044886475169E-4 0.0 0.0 2.836812144212524 0.0 14 1.6358044886475169E-4 0.0 0.0 2.9251455865994895 0.0 15 1.6358044886475169E-4 0.0 0.0 3.005300006543218 0.0 16 1.6358044886475169E-4 0.0 0.0 3.1090100111234706 0.0 17 1.6358044886475169E-4 0.0 0.0 3.2197539750049073 0.0 18 1.6358044886475169E-4 0.0 0.0 3.4062356867107244 0.0 19 1.6358044886475169E-4 0.0 0.0 3.496695674932932 0.0 20 1.6358044886475169E-4 0.0 0.0 3.5860106000130862 0.0 21 1.6358044886475169E-4 0.0 0.0 3.6823594843944254 0.0 22 1.6358044886475169E-4 0.0 0.0 3.7947392527645096 0.0 23 1.6358044886475169E-4 0.0 0.0 3.9094091474187005 0.0 24 1.6358044886475169E-4 0.0 0.0 4.006412353595498 0.0 25 1.6358044886475169E-4 0.0 0.0 4.0872210953346855 0.0 26 1.6358044886475169E-4 0.0 0.0 4.180952692534189 0.0 27 1.6358044886475169E-4 0.0 0.0 4.280900346790552 0.0 28 1.6358044886475169E-4 0.0 0.0 4.369397369626382 0.0 29 1.6358044886475169E-4 0.0 0.0 4.474906759144147 0.0 30 1.6358044886475169E-4 0.0 0.0 4.617548910554211 0.0 31 1.6358044886475169E-4 0.0 0.0 4.735817575083426 0.0 32 1.6358044886475169E-4 0.0 0.0 4.872570830334358 0.0 33 1.6358044886475169E-4 0.0 0.0 5.002780867630701 0.0 34 1.6358044886475169E-4 0.0 0.0 5.129555715500883 0.0 35 1.6358044886475169E-4 0.0 0.0 5.26369168356998 0.0 36 1.6358044886475169E-4 0.0 0.0 5.385886278871949 0.0 37 1.6358044886475169E-4 0.0 0.0 5.512988287639861 0.0 38 1.6358044886475169E-4 0.0 0.0 5.6665903291238635 0.0 39 1.6358044886475169E-4 0.0 0.0 5.880553556238958 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGCGA 55 1.8189894E-12 45.0 2 GCGTTAG 25 3.8886563E-5 45.0 1 TGTTCGG 25 3.8886563E-5 45.0 14 TCGTAGA 20 7.030693E-4 45.0 2 ATACGAT 20 7.030693E-4 45.0 10 ATTGCGA 40 6.8066583E-9 45.0 2 TATGCGA 30 2.163828E-6 44.999996 2 TCGTAAG 30 2.163828E-6 44.999996 1 CGTTTTT 5940 0.0 43.598484 1 AGCGATA 110 0.0 42.954544 8 GTTTTTA 4295 0.0 42.53783 2 TGCGCGA 65 0.0 41.538464 2 TGTGCGA 55 6.002665E-11 40.909092 2 ATACGAG 50 1.0804797E-9 40.5 3 GCACGAG 85 0.0 39.705883 3 CGTAAGA 40 3.4546792E-7 39.375 2 TAAGCGA 40 3.4546792E-7 39.375 2 TTATTTT 4890 0.0 39.15644 6 TATTTTT 4890 0.0 38.972393 7 GAGCGAT 515 0.0 38.883495 7 >>END_MODULE