##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546883_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2056930 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69406883073318 31.0 31.0 34.0 30.0 34.0 2 32.050549605480015 33.0 31.0 34.0 30.0 34.0 3 32.021298245443454 33.0 31.0 34.0 30.0 34.0 4 35.810082015430766 37.0 35.0 37.0 35.0 37.0 5 35.82545638402863 37.0 35.0 37.0 35.0 37.0 6 35.87005974923794 37.0 35.0 37.0 35.0 37.0 7 36.09340084494854 37.0 35.0 37.0 35.0 37.0 8 13.27476919486808 0.0 0.0 35.0 0.0 37.0 9 24.91577204863559 18.0 17.0 39.0 17.0 39.0 10 32.556040798665975 32.0 32.0 37.0 27.0 39.0 11 35.518015197405845 37.0 34.0 37.0 32.0 39.0 12 36.673365160700655 37.0 35.0 39.0 33.0 39.0 13 36.96169193895757 39.0 37.0 39.0 33.0 39.0 14 38.16587341329068 40.0 37.0 41.0 33.0 41.0 15 38.42168960538278 40.0 38.0 41.0 34.0 41.0 16 38.47807898178353 40.0 38.0 41.0 34.0 41.0 17 38.435465961408504 40.0 38.0 41.0 34.0 41.0 18 38.36597988264064 40.0 37.0 41.0 34.0 41.0 19 38.33508286621324 40.0 37.0 41.0 34.0 41.0 20 38.2770842955278 40.0 37.0 41.0 34.0 41.0 21 38.2206044931038 40.0 37.0 41.0 34.0 41.0 22 38.16436631290321 40.0 37.0 41.0 34.0 41.0 23 38.01658636900624 40.0 37.0 41.0 34.0 41.0 24 37.831019529104054 40.0 35.0 41.0 33.0 41.0 25 37.71659706455738 40.0 35.0 41.0 33.0 41.0 26 37.65515938802001 40.0 35.0 41.0 33.0 41.0 27 37.608312387879025 40.0 35.0 41.0 33.0 41.0 28 37.49083537115993 40.0 35.0 41.0 33.0 41.0 29 37.44339185096236 40.0 35.0 41.0 33.0 41.0 30 37.31580802458032 40.0 35.0 41.0 33.0 41.0 31 37.1929613550291 40.0 35.0 41.0 32.0 41.0 32 36.97026247854813 40.0 35.0 41.0 31.0 41.0 33 36.71809930333069 40.0 35.0 41.0 31.0 41.0 34 36.43522676999217 40.0 35.0 41.0 30.0 41.0 35 36.223052801991315 40.0 35.0 41.0 29.0 41.0 36 36.08417739057722 40.0 35.0 41.0 28.0 41.0 37 36.02046836790751 39.0 35.0 41.0 28.0 41.0 38 35.91475110966343 39.0 35.0 41.0 27.0 41.0 39 35.81612889111443 39.0 35.0 41.0 27.0 41.0 40 35.71103635028902 39.0 35.0 41.0 26.0 41.0 41 35.62961306412955 39.0 35.0 41.0 26.0 41.0 42 35.56397932841662 39.0 35.0 41.0 26.0 41.0 43 35.45030360780386 39.0 35.0 40.0 25.0 41.0 44 35.27525584244481 38.0 35.0 40.0 24.0 41.0 45 35.184042723865176 38.0 35.0 40.0 24.0 41.0 46 35.153724239522006 38.0 35.0 40.0 24.0 41.0 47 35.103219360892204 38.0 34.0 40.0 24.0 41.0 48 35.01306461571371 38.0 34.0 40.0 23.0 41.0 49 34.90995804426986 38.0 34.0 40.0 24.0 41.0 50 34.79986241631946 38.0 34.0 40.0 24.0 41.0 51 34.43692250100879 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 5.0 14 24.0 15 40.0 16 104.0 17 286.0 18 586.0 19 1360.0 20 2640.0 21 4432.0 22 7116.0 23 11482.0 24 18316.0 25 27490.0 26 35437.0 27 37507.0 28 36291.0 29 37529.0 30 42643.0 31 52206.0 32 67995.0 33 91895.0 34 136844.0 35 203892.0 36 218830.0 37 366595.0 38 456590.0 39 198747.0 40 42.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.89342369453506 22.30693314794378 26.30974316092429 17.48989999659687 2 37.21327415128371 23.04147443034036 27.071995643993716 12.673255774382211 3 29.594103834355085 23.539012022771804 33.97996042646079 12.886923716412324 4 25.727175936954588 25.879782005221376 32.874721064887964 15.518320992936074 5 22.8426344114773 29.997277496074247 32.122094577841736 15.03799351460672 6 20.6162582100509 38.857228977165 30.24872018007419 10.277792632709911 7 82.23045995731503 4.289159086599933 11.414438021711968 2.0659429343730706 8 31.037857389410433 63.621319150384316 4.175397315416665 1.1654261447885927 9 77.59559148828595 5.338003723996441 13.277262716767222 3.789142070950397 10 40.06723612373781 25.01062262692459 21.24471907162616 13.677422177711444 11 34.3540130194027 23.327094261836816 26.548983193399874 15.769909525360609 12 30.735513605227204 22.414958214426353 30.563023535074112 16.286504645272323 13 23.57975234937504 27.85038868605154 31.272430272299008 17.29742869227441 14 18.743078276849477 31.428390854331457 32.98663542269304 16.841895446126024 15 18.570053429139545 23.815735100368023 40.642024765062494 16.972186705429937 16 21.440593505855816 21.146806162582102 39.151113552721775 18.26148677884031 17 20.921859275716724 20.98190021050789 32.42473005887415 25.671510454901238 18 23.655496297880823 23.04176612718955 33.849474702590754 19.453262872338875 19 26.11673707904498 25.022533581599767 29.478883578925874 19.38184576042938 20 27.108311901717606 24.636181104850433 28.606223838438837 19.64928315499312 21 24.621742110815635 26.16574214970855 31.05633152319233 18.156184216283492 22 22.872581954660586 23.227528403980692 31.360474104612212 22.53941553674651 23 21.149528666507855 26.431186282469504 31.068388326292094 21.350896724730546 24 22.160112400519218 24.657134661850428 34.02755562901994 19.155197308610404 25 21.513614950435844 24.141220167920153 33.10496711118026 21.24019777046375 26 19.464055655758823 27.658549391568986 30.524325086415192 22.353069866256995 27 20.259269882786484 26.246347712367463 32.349180574934486 21.145201829911567 28 18.681238544821653 26.222525803017117 35.397072335956985 19.699163316204245 29 20.446344795398968 25.449091607395484 34.41021327901289 19.694350318192647 30 22.239502559639853 24.839347960309784 33.76697311041212 19.154176369638247 31 26.51597283330011 24.05478066827748 29.420106663814522 20.009139834607886 32 26.987743870719953 25.245389974379297 29.15908659993291 18.60777955496784 33 25.803065733884967 24.77036165547685 29.146592251559362 20.279980359078824 34 21.416820212647004 26.701929574657377 31.27943099667952 20.6018192160161 35 21.505155741809396 25.95902631591741 31.081757765213208 21.45406017705999 36 25.684004803274785 26.834943337887047 28.312922656580437 19.168129202257735 37 22.40596422824306 29.1200964544248 28.536411059199875 19.937528258132264 38 22.241495821442637 30.57435109605091 26.29642233814471 20.887730744361743 39 22.346360838725673 27.69350439733 27.348913186156064 22.611221577788257 40 23.103071081660534 25.440875479476695 28.277627337828704 23.178426101034066 41 20.365739232740054 25.390509156850253 28.61482889548988 25.628922714919806 42 22.38170477361894 27.12061178552503 26.7983839994555 23.699299441400534 43 21.794664864628356 26.3111530290287 27.57740905135323 24.316773054989717 44 21.25458814835702 27.790639448109562 28.91260276236916 22.042169641164257 45 21.089633580141278 29.1865547198981 27.565741177385718 22.158070522574906 46 22.99319860179977 28.176505763443576 28.552162689056022 20.27813294570063 47 22.206638047964685 27.052646419664256 28.468299844914508 22.272415687456547 48 21.801325276018144 26.36341538117486 29.887016087081232 21.948243255725767 49 22.27649944334518 24.913195879295845 30.593068310540467 22.21723636681851 50 20.70556606204392 27.46102200852727 29.540237149538388 22.293174779890418 51 20.741007229220244 28.402279124714987 28.656249848074555 22.200463797990206 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1377.0 1 2601.5 2 3826.0 3 25511.0 4 47196.0 5 31999.5 6 16803.0 7 16521.0 8 16239.0 9 16391.5 10 16544.0 11 16099.0 12 15654.0 13 15046.0 14 14438.0 15 13530.5 16 12623.0 17 12100.0 18 11577.0 19 11247.5 20 10918.0 21 11407.5 22 11897.0 23 12363.5 24 12830.0 25 14357.5 26 17754.5 27 19624.0 28 23014.0 29 26404.0 30 31083.0 31 35762.0 32 39530.0 33 43298.0 34 47828.5 35 52359.0 36 59943.5 37 67528.0 38 80089.5 39 92651.0 40 108646.5 41 124642.0 42 133055.5 43 141469.0 44 145637.0 45 149805.0 46 154081.5 47 158358.0 48 158475.0 49 158592.0 50 152789.5 51 146987.0 52 135583.5 53 124180.0 54 115912.0 55 107644.0 56 102094.5 57 96545.0 58 90465.0 59 84385.0 60 76650.0 61 68915.0 62 60046.0 63 51177.0 64 42568.0 65 33959.0 66 28230.0 67 22501.0 68 19414.5 69 16328.0 70 14015.5 71 11703.0 72 9377.0 73 7051.0 74 5309.0 75 2734.5 76 1902.0 77 1406.0 78 910.0 79 672.0 80 434.0 81 329.5 82 225.0 83 167.5 84 110.0 85 82.5 86 55.0 87 42.0 88 29.0 89 23.0 90 17.0 91 9.0 92 1.0 93 2.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2056930.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.587433853697163 #Duplication Level Percentage of deduplicated Percentage of total 1 73.66195129333586 19.58482257545829 2 6.287880918095149 3.3435723597955866 3 2.917429190098225 2.327008668437455 4 1.9454331846645443 2.0689630445622393 5 1.4391826607478413 1.9132086898010554 6 1.163722850988298 1.8564242594812355 7 0.9963734115564122 1.8543708521337083 8 0.8897610829020065 1.8925171149800843 9 0.8028559332033199 1.9211291116282418 >10 9.473671424704843 52.919023924787275 >50 0.37902981258492147 6.25257391439632 >100 0.03924545969594976 1.9279395498264862 >500 0.002500894805237264 0.47690377419347607 >1k 5.771295704393686E-4 0.2326721652516219 >5k 1.9237652347978953E-4 0.5074391188088241 >10k+ 1.9237652347978953E-4 0.9214308764581156 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18015 0.8758197896865718 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9921 0.4823207401321387 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2347 0.11410208417398744 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005396391709975546 0.0 2 0.0 0.0 0.0 0.018814446772617444 0.0 3 0.0 0.0 0.0 0.03665657071460866 0.0 4 0.0 0.0 0.0 0.05853383440369871 0.0 5 0.0 0.0 0.0 0.11492855858001974 0.0 6 0.0 0.0 0.0 0.22893341047094456 0.0 7 0.0 0.0 0.0 0.304920439684384 0.0 8 0.0 0.0 0.0 0.4785286810926964 0.0 9 0.0 0.0 0.0 0.7519944772063221 0.0 10 0.0 0.0 0.0 1.1240051922039156 0.0 11 0.0 0.0 0.0 1.329019461041455 0.0 12 0.0 0.0 0.0 1.5197892004103202 0.0 13 0.0 0.0 0.0 1.6099235268093712 0.0 14 0.0 0.0 0.0 1.652365418366206 0.0 15 0.0 0.0 0.0 1.6968491878673557 0.0 16 0.0 0.0 0.0 1.7721555910993567 0.0 17 0.0 0.0 0.0 1.8562615159485252 0.0 18 0.0 0.0 0.0 1.9971997102477965 0.0 19 0.0 0.0 0.0 2.05665725134059 0.0 20 0.0 0.0 0.0 2.132109502997185 0.0 21 0.0 0.0 0.0 2.218792083347513 0.0 22 0.0 0.0 0.0 2.3098015002941277 0.0 23 0.0 0.0 0.0 2.4120412459344753 0.0 24 0.0 0.0 0.0 2.491868950328888 0.0 25 0.0 0.0 0.0 2.5639666882198227 0.0 26 0.0 0.0 0.0 2.636501971384539 0.0 27 0.0 0.0 0.0 2.71180837461654 0.0 28 0.0 0.0 0.0 2.7975186321362417 0.0 29 0.0 0.0 0.0 2.889548988055014 0.0 30 0.0 0.0 0.0 3.0097767060619467 0.0 31 4.8616141531311224E-5 0.0 0.0 3.1089536347858218 0.0 32 4.8616141531311224E-5 0.0 0.0 3.211485077275357 0.0 33 4.8616141531311224E-5 0.0 0.0 3.316447326841458 0.0 34 4.8616141531311224E-5 0.0 0.0 3.429431239760225 0.0 35 4.8616141531311224E-5 0.0 0.0 3.5516036034284104 0.0 36 4.8616141531311224E-5 0.0 0.0 3.6636151935165513 0.0 37 4.8616141531311224E-5 0.0 0.0 3.7802939331916985 0.0 38 4.8616141531311224E-5 0.0 0.0 3.9337264758645167 0.0 39 4.8616141531311224E-5 0.0 0.0 4.13222618173686 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 15355 0.0 43.54933 1 ACGGTCT 590 0.0 43.47457 30 CGGTCTA 615 0.0 41.70732 31 GTTTTTA 10615 0.0 41.39661 2 ACGACGG 615 0.0 41.341465 27 CGACGGT 640 0.0 41.132816 28 TCACGAC 615 0.0 40.975613 25 TATCGCG 50 1.0822987E-9 40.5 1 CACGACG 635 0.0 40.393703 26 GACGGTC 670 0.0 39.626865 29 GGTCTAA 655 0.0 39.503815 32 GAGCGAT 1540 0.0 39.44805 7 TACGACG 40 3.4599907E-7 39.375004 1 CGCATCG 105 0.0 38.57143 21 CACGACC 320 0.0 37.968754 27 AGGGGAA 11525 0.0 37.893707 8 TAGAGTA 850 0.0 37.588238 5 CTATACG 60 1.5643309E-10 37.500004 1 CTAACCT 720 0.0 37.5 15 TTATTTT 12360 0.0 37.427185 6 >>END_MODULE