SRR1546882_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546882_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1257591
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5124	0.4074456639718319	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3402	0.2705172031288392	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1800	0.1431307953062641	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	75	0.0	45.000004	1
CCGTAGG	30	2.1656651E-6	45.000004	1
CTACGCG	35	1.2120472E-7	45.000004	1
TACGACA	30	2.1656651E-6	45.000004	23
GTCACGA	70	0.0	45.000004	2
GTTCACG	55	1.8189894E-12	45.000004	1
CGTGTAA	30	2.1656651E-6	45.000004	26
GCGTGAT	30	2.1656651E-6	45.000004	16
GCTACGA	60	0.0	45.000004	2
CGCGTCA	30	2.1656651E-6	45.000004	39
ATTGCGA	125	0.0	45.000004	2
TATCGTA	30	2.1656651E-6	45.000004	26
TAGTCTA	30	2.1656651E-6	45.000004	2
GTACCGA	20	7.0335396E-4	45.0	2
CCTAGGT	20	7.0335396E-4	45.0	39
AAGACGC	20	7.0335396E-4	45.0	38
ATTCGAA	20	7.0335396E-4	45.0	3
TAACGGC	20	7.0335396E-4	45.0	17
TATGCGT	20	7.0335396E-4	45.0	20
GTAGCGC	20	7.0335396E-4	45.0	34