##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546881_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2098787 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.641925550329784 31.0 31.0 33.0 30.0 34.0 2 31.99510574441332 31.0 31.0 34.0 30.0 34.0 3 31.983904512463628 33.0 31.0 34.0 30.0 34.0 4 35.78074716491002 37.0 35.0 37.0 35.0 37.0 5 35.79024407907996 37.0 35.0 37.0 35.0 37.0 6 35.837759143733976 37.0 35.0 37.0 35.0 37.0 7 36.050779807574564 37.0 35.0 37.0 35.0 37.0 8 13.27031375742274 0.0 0.0 35.0 0.0 37.0 9 24.904546769157612 18.0 17.0 38.0 17.0 39.0 10 32.503132523691065 32.0 32.0 37.0 27.0 39.0 11 35.45967551733454 37.0 34.0 37.0 32.0 39.0 12 36.59179754782167 37.0 35.0 39.0 33.0 39.0 13 36.88163258110518 39.0 37.0 39.0 33.0 39.0 14 38.0513915895229 40.0 37.0 41.0 33.0 41.0 15 38.30272724197358 40.0 37.0 41.0 33.0 41.0 16 38.358919223341864 40.0 37.0 41.0 34.0 41.0 17 38.323676961978514 40.0 37.0 41.0 34.0 41.0 18 38.26288661021819 40.0 37.0 41.0 33.0 41.0 19 38.2347260584328 40.0 37.0 41.0 34.0 41.0 20 38.19789954864405 40.0 37.0 41.0 34.0 41.0 21 38.13510232338965 40.0 37.0 41.0 33.0 41.0 22 38.07178003294284 40.0 37.0 41.0 33.0 41.0 23 37.93010962999104 40.0 36.0 41.0 33.0 41.0 24 37.78834965148917 40.0 35.0 41.0 33.0 41.0 25 37.66218963620415 40.0 35.0 41.0 33.0 41.0 26 37.59606668042064 40.0 35.0 41.0 33.0 41.0 27 37.53991758096463 40.0 35.0 41.0 33.0 41.0 28 37.432470755726996 40.0 35.0 41.0 33.0 41.0 29 37.393182824174154 40.0 35.0 41.0 33.0 41.0 30 37.27628006081608 40.0 35.0 41.0 33.0 41.0 31 37.168114248849456 40.0 35.0 41.0 32.0 41.0 32 36.97522759574935 40.0 35.0 41.0 31.0 41.0 33 36.753723460265384 40.0 35.0 41.0 31.0 41.0 34 36.49929173374907 40.0 35.0 41.0 30.0 41.0 35 36.30722221931049 39.0 35.0 41.0 30.0 41.0 36 36.1720517613269 39.0 35.0 41.0 29.0 41.0 37 36.10441936223161 39.0 35.0 41.0 29.0 41.0 38 36.00339338865735 39.0 35.0 41.0 29.0 41.0 39 35.90920422129545 39.0 35.0 41.0 28.0 41.0 40 35.79175066359759 39.0 35.0 41.0 27.0 41.0 41 35.711618663542325 39.0 35.0 40.0 27.0 41.0 42 35.64875616248814 39.0 35.0 40.0 27.0 41.0 43 35.53333473096603 39.0 35.0 40.0 26.0 41.0 44 35.35397589178893 38.0 35.0 40.0 26.0 41.0 45 35.242999408706076 38.0 35.0 40.0 25.0 41.0 46 35.20831508866788 38.0 34.0 40.0 25.0 41.0 47 35.15939778548276 38.0 34.0 40.0 25.0 41.0 48 35.06103382572886 38.0 34.0 40.0 24.0 41.0 49 34.951861718221046 38.0 34.0 40.0 24.0 41.0 50 34.819894062618076 38.0 34.0 40.0 24.0 41.0 51 34.46089431657429 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 3.0 12 7.0 13 9.0 14 11.0 15 36.0 16 79.0 17 270.0 18 587.0 19 1346.0 20 2561.0 21 4369.0 22 7153.0 23 11128.0 24 17342.0 25 25771.0 26 33192.0 27 35987.0 28 36605.0 29 38072.0 30 45419.0 31 56225.0 32 73001.0 33 99091.0 34 147082.0 35 212583.0 36 232372.0 37 379803.0 38 447915.0 39 190725.0 40 38.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.89062968276438 22.350338552697345 26.656349596219147 16.10268216831913 2 35.54424531884369 23.815041736012276 27.54352871444315 13.097184230700876 3 30.326278941121704 23.853778396759655 32.736385350204664 13.083557311913976 4 26.076300262961418 26.301430302360362 32.03312198903462 15.589147445643603 5 23.212312635822503 30.52201104733353 31.15604394347783 15.10963237336614 6 20.800967415940733 39.3984239467845 29.292729562361497 10.507879074913271 7 83.49541902060571 4.480063960754474 9.950461862018395 2.07405515662142 8 31.608972230150084 63.614554502195794 3.703806055593064 1.072667212061062 9 79.18459567359622 5.327648779985773 11.831643706579085 3.6561118398389167 10 41.591690819506695 24.82877014199154 19.563871893622363 14.015667144879398 11 35.80315677579478 24.05808688542477 24.34449041279558 15.794265925984865 12 31.47379891337234 22.87325964950231 28.93585675916613 16.71708467795922 13 24.26892295406823 28.481689661695064 29.375872825589255 17.873514558647447 14 19.562823669100293 31.66490930237323 31.6757727201474 17.09649430837908 15 19.809775837185956 23.559894358026803 39.65338073849323 16.976949066294004 16 22.14803121993799 21.18923930822899 37.72107412519708 18.941655346635937 17 21.84538021247511 20.891638837099716 30.579091637217115 26.68388931320806 18 24.52545208256007 23.133266977544647 32.48362030067844 19.857660639216842 19 27.289715440394858 24.35397208006339 28.504750601180582 19.851561878361167 20 28.567358193089625 24.523307986946747 26.794810526270652 20.114523293692976 21 25.827680464954284 26.00039927824977 29.518240774313924 18.653679482482026 22 23.940304566399544 23.193063421871777 29.67423564182549 23.192396369903186 23 21.980601175822034 27.05596137197343 28.94414726220431 22.019290190000223 24 22.314603625808623 24.930066748078772 33.18092784070036 19.574401785412242 25 22.199108342104275 24.230758052151074 32.347494052517 21.22263955322765 26 20.342845653227318 28.041197129580087 29.360006518050664 22.255950699141934 27 20.884825377706264 26.319821878065756 31.357779517406957 21.437573226821016 28 18.94761116778406 26.55362359305637 34.39677299316224 20.10199224599733 29 20.63544323459217 26.200419575688244 33.04565923078426 20.118477958935326 30 23.327855566096037 25.233813626632905 32.022353864398816 19.41597694287224 31 27.363138803508885 24.03869473176649 27.892730419999744 20.70543604472488 32 27.421553497329647 25.263211559820032 28.18199274152165 19.133242201328674 33 26.222051118098218 24.75768146076758 27.923033638001378 21.09723378313283 34 22.354483804216436 26.61670765065726 30.001805804972108 21.027002740154195 35 22.282394545039587 26.569108728041485 29.90713207200159 21.24136465491734 36 26.512028138157902 27.045907945875403 26.436937145122396 20.005126770844303 37 22.789163454890847 29.652842332261443 27.087979866465727 20.47001434638198 38 23.096579119272228 30.67819650112184 24.726520604520612 21.498703775085325 39 23.171146000046694 27.71419872526369 26.079587876235177 23.03506739845444 40 24.046079949990162 25.40962946692542 27.065585978948793 23.47870460413563 41 20.98240555139707 25.678308470559426 27.387247967516476 25.952038010527033 42 22.982608525781796 26.715431342008504 25.509449029367914 24.792511102841786 43 22.10414872971864 26.138145509763493 26.982490362290218 24.775215398227644 44 22.051880443322737 27.674032667440763 27.891729842046857 22.38235704718964 45 21.394548374846995 29.160319746596485 26.584832095872517 22.860299782684 46 23.454214267574557 27.808443639111545 27.38386506110434 21.353477032209558 47 22.833379471094496 27.040523883557505 28.02876137502281 22.097335270325193 48 22.467310880046426 26.263122460735655 29.25542229868967 22.01414436052825 49 22.67705107759863 25.182545918189884 29.64907825329583 22.49132475091565 50 21.690767095469905 27.467580083162325 29.061500762106874 21.780152059260896 51 21.44500609161387 28.68066173461147 27.307106438147365 22.567225735627293 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1327.0 1 2423.0 2 3519.0 3 20310.0 4 37101.0 5 25750.0 6 14399.0 7 14176.5 8 13954.0 9 14233.0 10 14512.0 11 14205.0 12 13898.0 13 13344.0 14 12790.0 15 12183.0 16 11576.0 17 10899.5 18 10223.0 19 10124.0 20 10025.0 21 10180.5 22 10336.0 23 11107.5 24 11879.0 25 13757.0 26 17772.5 27 19910.0 28 22271.5 29 24633.0 30 28826.0 31 33019.0 32 37019.0 33 41019.0 34 45071.0 35 49123.0 36 56180.0 37 63237.0 38 76834.0 39 90431.0 40 106277.0 41 122123.0 42 131405.5 43 140688.0 44 144306.5 45 147925.0 46 154139.0 47 160353.0 48 161575.5 49 162798.0 50 160500.5 51 158203.0 52 148432.5 53 138662.0 54 130351.5 55 122041.0 56 114633.5 57 107226.0 58 100545.5 59 93865.0 60 85000.5 61 76136.0 62 66462.0 63 56788.0 64 47432.5 65 38077.0 66 31352.5 67 24628.0 68 20701.5 69 16775.0 70 14695.5 71 12616.0 72 10637.5 73 8659.0 74 6617.0 75 3407.5 76 2240.0 77 1654.0 78 1068.0 79 771.5 80 475.0 81 329.0 82 183.0 83 134.0 84 85.0 85 57.5 86 30.0 87 22.5 88 15.0 89 9.5 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2098787.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.567665668922935 #Duplication Level Percentage of deduplicated Percentage of total 1 74.84710591987553 19.1366578044584 2 5.897525752058259 3.015719334049777 3 2.590124018542474 1.9867027484142332 4 1.7379369859724443 1.7773996724399623 5 1.2648091264598502 1.616910844016396 6 1.0647359241238785 1.6333687280214615 7 0.9100736220357319 1.6287920671620728 8 0.790694391709238 1.6172967882811349 9 0.7661504987585406 1.7629811823903225 >10 9.486444416708864 52.47587783476734 >50 0.5922248927917317 9.537658187709642 >100 0.04825161201203044 2.0699157366720016 >500 0.003334413108787579 0.59932971175991 >1k 1.9614194757573995E-4 0.10320647199413395 >5k 1.9614194757573995E-4 0.3683437982492293 >10k+ 1.9614194757573995E-4 0.6698390896140171 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13357 0.6364152246035448 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7345 0.34996405066354996 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005479355456270693 0.0 2 0.0 0.0 0.0 0.0208691973030136 0.0 3 0.0 0.0 0.0 0.0374025568101956 0.0 4 0.0 0.0 0.0 0.0563658913458107 0.0 5 0.0 0.0 0.0 0.11087356649340786 0.0 6 0.0 0.0 0.0 0.20216439305179612 0.0 7 0.0 0.0 0.0 0.26177025110218427 0.0 8 0.0 0.0 0.0 0.3986588443705817 0.0 9 0.0 0.0 0.0 0.6015855825293371 0.0 10 0.0 0.0 0.0 0.8967560786301801 0.0 11 0.0 0.0 0.0 1.073858376290686 0.0 12 0.0 0.0 0.0 1.2444330939728518 0.0 13 0.0 0.0 0.0 1.3305780910592642 0.0 14 0.0 0.0 0.0 1.3725070719420314 0.0 15 4.7646569184962554E-5 0.0 0.0 1.4142454665480584 0.0 16 4.7646569184962554E-5 0.0 0.0 1.4949111081782 0.0 17 4.7646569184962554E-5 0.0 0.0 1.5781020179751446 0.0 18 4.7646569184962554E-5 0.0 0.0 1.730380453090285 0.0 19 4.7646569184962554E-5 0.0 0.0 1.788938086618604 0.0 20 4.7646569184962554E-5 0.0 0.0 1.8580256119367997 0.0 21 4.7646569184962554E-5 0.0 0.0 1.9384053741518315 0.0 22 4.7646569184962554E-5 0.0 0.0 2.020595705995892 0.0 23 4.7646569184962554E-5 0.0 0.0 2.123226416020301 0.0 24 4.7646569184962554E-5 0.0 0.0 2.197173891395363 0.0 25 4.7646569184962554E-5 0.0 0.0 2.2656896578833394 0.0 26 4.7646569184962554E-5 0.0 0.0 2.3393989004124762 0.0 27 4.7646569184962554E-5 0.0 0.0 2.4144898934479775 0.0 28 4.7646569184962554E-5 0.0 0.0 2.492106154650281 0.0 29 4.7646569184962554E-5 0.0 0.0 2.5734864948181975 0.0 30 4.7646569184962554E-5 0.0 0.0 2.6826447848209467 0.0 31 4.7646569184962554E-5 0.0 0.0 2.776746758961248 0.0 32 4.7646569184962554E-5 0.0 0.0 2.872992828714872 0.0 33 9.529313836992511E-5 0.0 0.0 2.982389351563546 0.0 34 9.529313836992511E-5 0.0 0.0 3.094358789148208 0.0 35 9.529313836992511E-5 0.0 0.0 3.2169057650919317 0.0 36 9.529313836992511E-5 0.0 0.0 3.323348200651138 0.0 37 9.529313836992511E-5 0.0 0.0 3.436365862757869 0.0 38 1.4293970755488767E-4 0.0 0.0 3.57549384477796 0.0 39 1.4293970755488767E-4 0.0 0.0 3.7627448616748627 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 270 0.0 43.333332 31 CGTTTTT 12950 0.0 43.297295 1 GTTTTTA 9590 0.0 40.565693 2 GAGCGAT 1955 0.0 39.705883 7 TATACGA 110 0.0 38.863636 2 GAGGGGA 12195 0.0 38.302586 7 TAGCATA 805 0.0 37.732918 30 AGGGGAA 12490 0.0 37.52402 8 TATCGCG 60 1.5643309E-10 37.500004 1 TGCGTAG 180 0.0 37.5 1 TCACGAC 325 0.0 37.384617 25 TTATTTT 11255 0.0 36.983562 6 TTTTATT 11350 0.0 36.713657 4 GCGCGAC 650 0.0 36.692307 9 TATTTTT 11445 0.0 36.389256 7 GACCGAT 745 0.0 36.24161 9 CGACGGT 330 0.0 36.136364 28 TTTATTT 11565 0.0 36.011673 5 TTTAGCG 100 0.0 36.000004 1 CTATACG 25 0.002107504 36.000004 1 >>END_MODULE