##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546880_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 487226 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.702023291039477 31.0 31.0 34.0 30.0 34.0 2 32.05738404764934 33.0 31.0 34.0 30.0 34.0 3 32.032198610090596 33.0 31.0 34.0 30.0 34.0 4 35.81941439906738 37.0 35.0 37.0 35.0 37.0 5 35.82752357222316 37.0 35.0 37.0 35.0 37.0 6 35.8733647219155 37.0 35.0 37.0 35.0 37.0 7 36.069924429320274 37.0 35.0 37.0 35.0 37.0 8 13.241949321259538 0.0 0.0 35.0 0.0 37.0 9 24.861546797584694 18.0 17.0 38.0 17.0 39.0 10 32.61061191315734 32.0 32.0 37.0 27.0 39.0 11 35.55961094030286 37.0 35.0 37.0 32.0 39.0 12 36.67251747648935 37.0 35.0 39.0 33.0 39.0 13 36.949943147533176 39.0 37.0 39.0 33.0 39.0 14 38.15864711653319 40.0 37.0 41.0 33.0 41.0 15 38.42144713131073 40.0 38.0 41.0 34.0 41.0 16 38.48418598350663 40.0 38.0 41.0 34.0 41.0 17 38.462177716295926 40.0 38.0 41.0 34.0 41.0 18 38.37789034246941 40.0 37.0 41.0 34.0 41.0 19 38.34166690611749 40.0 37.0 41.0 34.0 41.0 20 38.28464203470258 40.0 37.0 41.0 34.0 41.0 21 38.21859670871423 40.0 37.0 41.0 34.0 41.0 22 38.16235381527258 40.0 37.0 41.0 34.0 41.0 23 37.9991585013936 40.0 36.0 41.0 33.0 41.0 24 37.82177264760091 40.0 35.0 41.0 33.0 41.0 25 37.69989286286036 40.0 35.0 41.0 33.0 41.0 26 37.62668658897514 40.0 35.0 41.0 33.0 41.0 27 37.55899520961525 40.0 35.0 41.0 33.0 41.0 28 37.45306079724809 40.0 35.0 41.0 33.0 41.0 29 37.42169958089264 40.0 35.0 41.0 33.0 41.0 30 37.30160336271053 40.0 35.0 41.0 33.0 41.0 31 37.17379614388395 40.0 35.0 41.0 32.0 41.0 32 36.950583507448286 40.0 35.0 41.0 31.0 41.0 33 36.706452447119 40.0 35.0 41.0 31.0 41.0 34 36.423803327408635 40.0 35.0 41.0 30.0 41.0 35 36.220636829725834 40.0 35.0 41.0 29.0 41.0 36 36.08062788110651 40.0 35.0 41.0 28.0 41.0 37 36.009761383834196 39.0 35.0 41.0 28.0 41.0 38 35.907342793693275 39.0 35.0 41.0 27.0 41.0 39 35.810227697208276 39.0 35.0 41.0 27.0 41.0 40 35.69356109895613 39.0 35.0 41.0 26.0 41.0 41 35.6199894915296 39.0 35.0 41.0 26.0 41.0 42 35.5535028918818 39.0 35.0 41.0 26.0 41.0 43 35.44339793032392 39.0 35.0 40.0 25.0 41.0 44 35.199488533042164 38.0 35.0 40.0 24.0 41.0 45 35.12249756786378 38.0 35.0 40.0 23.0 41.0 46 35.08920295714925 38.0 34.0 40.0 24.0 41.0 47 35.06314933932097 38.0 34.0 40.0 24.0 41.0 48 34.98271438716325 38.0 34.0 40.0 23.0 41.0 49 34.87119119258824 38.0 34.0 40.0 24.0 41.0 50 34.75513416771683 38.0 34.0 40.0 24.0 41.0 51 34.412769433486716 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 5.0 13 6.0 14 4.0 15 14.0 16 22.0 17 61.0 18 159.0 19 299.0 20 631.0 21 1100.0 22 1778.0 23 2898.0 24 4366.0 25 6625.0 26 8277.0 27 8789.0 28 8520.0 29 8557.0 30 9798.0 31 12453.0 32 16062.0 33 22054.0 34 32656.0 35 48737.0 36 52799.0 37 87394.0 38 107087.0 39 46065.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.67815756958783 21.781678317659566 26.113138461412156 17.427025651340447 2 37.46043930332125 23.265999761917467 26.284722079691967 12.988838855069309 3 29.58093369401469 24.08471633287222 32.78704338438425 13.547306588728844 4 26.49427575704088 25.759093316038147 31.901212168480335 15.84541875844064 5 23.15845213514878 29.649485043901596 31.50221868291101 15.68984413803861 6 21.060862926034325 38.822230340745364 29.640659570712565 10.476247162507748 7 80.70402646820982 5.219138551719325 11.769076362919877 2.307758617150973 8 30.269525846321834 64.00746265593381 4.371687882009581 1.3513236157347923 9 75.14151543636834 6.438490556743688 13.919413167605999 4.500580839281976 10 40.92926075373646 25.235927475134744 20.233526125453075 13.601285645675723 11 35.08453982340844 23.512702524085334 26.010927167269397 15.391830485236829 12 30.688222713894582 22.302996966500146 30.6728294467044 16.33595087290087 13 23.301506898236138 28.980391030035342 30.84564452635943 16.87245754536909 14 18.933102913227128 31.643221010373008 32.46583720901594 16.957838867383927 15 18.19361035741114 23.64857376248394 41.252314121167586 16.90550175893733 16 20.416192896109813 21.576024267998832 39.50076555848826 18.507017277403097 17 21.304897521889227 20.586339809451875 31.62680152537016 26.48196114328874 18 23.370468735248117 22.528970128851906 33.82803873356512 20.27252240233485 19 26.860635516167036 23.46960137595284 30.059561681847846 19.610201426032273 20 28.156132882892127 23.87557314264838 28.45496750994405 19.51332646451544 21 24.83200814406456 25.513827258808025 30.70669463452279 18.947469962604625 22 23.775414284130978 23.323262715864917 30.00373543283815 22.897587567165957 23 21.57232988387319 26.60346533230985 30.015844803027754 21.808359980789202 24 21.90646640368125 24.28954940828281 34.43391773017039 19.370066457865548 25 21.40587735465677 24.25260556702639 33.42658232524537 20.91493475307147 26 19.630931025848376 27.922360465164008 30.5076083788632 21.93910013012442 27 20.327732920656942 27.23664172273237 31.9217365247339 20.513888831876788 28 19.374787059803868 25.819024436298555 35.57876632199431 19.227422181903265 29 20.444926994864808 25.35106911371725 34.19850336394199 20.005500527475956 30 21.563709654246694 26.18846284886275 32.67846953980288 19.56935795708768 31 26.18969431023796 24.50156600838215 28.66801032785607 20.640729353523827 32 26.638767225065983 25.402380004351166 29.406066178734303 18.552786591848548 33 25.86171509730597 24.98286216252827 28.619367603535117 20.53605513663064 34 21.61974114681893 26.20139319330249 30.765599536970523 21.413266122908055 35 22.177182662665786 25.8434484202403 30.746101398529635 21.23326751856428 36 26.266044915501226 26.773407002089378 27.23356306929433 19.726985013115065 37 22.78819274833445 29.135349919749764 27.911072069224545 20.165385262691235 38 22.562630073107755 30.823683465168116 25.705524746216334 20.90816171550779 39 22.390020237015264 28.858065866764086 26.92672394330352 21.825189952917125 40 23.758994799128125 25.803836412670915 27.80229298108065 22.63487580712031 41 20.64052410996129 25.632252794391103 28.012462389117164 25.714760706530438 42 22.534922192165443 27.391600612446794 26.550512493175653 23.522964702212114 43 22.65560540693641 26.409099678588582 27.739488450944737 23.19580646353027 44 21.678030318579058 28.695718208798382 28.588375825592234 21.03787564703033 45 21.187498204118825 29.604126216581218 27.27461178180146 21.933763797498493 46 22.645958959497236 28.78889878618957 28.021082618743666 20.544059635569532 47 22.47971167384335 27.188204241973953 28.726915230303803 21.605168853878897 48 22.82164744902776 26.034735420523536 29.546863262633767 21.596753867814936 49 22.179440341853677 25.461900637486508 30.435362644850645 21.923296375809173 50 20.89748905025594 28.989216503224373 28.95535131540599 21.157943131113694 51 20.641755571336507 29.367685632540137 27.4509160020196 22.539642794103763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 401.0 1 701.0 2 1001.0 3 5538.5 4 10076.0 5 7040.5 6 4005.0 7 3936.5 8 3868.0 9 3892.0 10 3916.0 11 3817.0 12 3718.0 13 3601.5 14 3485.0 15 3281.5 16 3078.0 17 2970.5 18 2863.0 19 2861.0 20 2859.0 21 2905.0 22 2951.0 23 3066.0 24 3181.0 25 3539.0 26 4381.0 27 4865.0 28 5612.5 29 6360.0 30 7548.5 31 8737.0 32 9720.0 33 10703.0 34 11577.5 35 12452.0 36 14217.5 37 15983.0 38 19070.0 39 22157.0 40 25652.0 41 29147.0 42 31250.0 43 33353.0 44 34076.5 45 34800.0 46 34971.5 47 35143.0 48 35111.5 49 35080.0 50 34645.5 51 34211.0 52 32049.5 53 29888.0 54 28181.0 55 26474.0 56 25131.0 57 23788.0 58 21836.5 59 19885.0 60 17882.0 61 15879.0 62 14303.5 63 12728.0 64 10671.5 65 8615.0 66 7403.0 67 6191.0 68 5320.5 69 4450.0 70 3709.0 71 2968.0 72 2413.5 73 1859.0 74 1471.5 75 825.0 76 566.0 77 441.0 78 316.0 79 217.0 80 118.0 81 89.5 82 61.0 83 45.0 84 29.0 85 25.5 86 22.0 87 15.0 88 8.0 89 5.0 90 2.0 91 1.0 92 0.0 93 2.0 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 487226.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.05072465368494 #Duplication Level Percentage of deduplicated Percentage of total 1 66.20971911252245 27.1795694868598 2 9.395422202508941 7.713777796806251 3 5.917836651993828 7.2879444883945 4 4.278818714789246 7.025944356153896 5 3.28884364049749 6.750470735754262 6 2.5067188062500048 6.174157409974965 7 1.933451575520953 5.555871178056077 8 1.5185261696076762 4.986927973438367 9 1.1674700384716379 4.313294198165355 >10 3.757658510313554 20.84758548099973 >50 0.017523729673649093 0.4885494293482212 >100 0.006508813878554882 0.36892983830722925 >500 5.006779906580679E-4 0.12085278268782775 >1k 0.0010013559813161358 1.1861248450534931 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3673 0.7538596051934832 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2098 0.4306009941998169 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 588 0.1206832147709687 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0524356253566106E-4 0.0 0.0 0.003078653438034916 0.0 2 2.0524356253566106E-4 0.0 0.0 0.018061433503138175 0.0 3 2.0524356253566106E-4 0.0 0.0 0.036943841256418995 0.0 4 2.0524356253566106E-4 0.0 0.0 0.051310890633915265 0.0 5 2.0524356253566106E-4 0.0 0.0 0.09831166645458166 0.0 6 2.0524356253566106E-4 0.0 0.0 0.18102482215645307 0.0 7 2.0524356253566106E-4 0.0 0.0 0.23069376429008304 0.0 8 2.0524356253566106E-4 0.0 0.0 0.3304421356824143 0.0 9 2.0524356253566106E-4 0.0 0.0 0.4851957818343028 0.0 10 2.0524356253566106E-4 0.0 0.0 0.723073070813134 0.0 11 2.0524356253566106E-4 0.0 0.0 0.8815211010906643 0.0 12 2.0524356253566106E-4 0.0 0.0 1.0451002204315862 0.0 13 2.0524356253566106E-4 0.0 0.0 1.1183721722568172 0.0 14 2.0524356253566106E-4 0.0 0.0 1.153058334325344 0.0 15 2.0524356253566106E-4 0.0 0.0 1.1895916884566915 0.0 16 2.0524356253566106E-4 0.0 0.0 1.2523962185926039 0.0 17 2.0524356253566106E-4 0.0 0.0 1.325462926855299 0.0 18 2.0524356253566106E-4 0.0 0.0 1.4566135633155866 0.0 19 2.0524356253566106E-4 0.0 0.0 1.5075139668244306 0.0 20 2.0524356253566106E-4 0.0 0.0 1.5680608177724507 0.0 21 2.0524356253566106E-4 0.0 0.0 1.6345597320340048 0.0 22 2.0524356253566106E-4 0.0 0.0 1.710089363047128 0.0 23 2.0524356253566106E-4 0.0 0.0 1.7868504554354652 0.0 24 2.0524356253566106E-4 0.0 0.0 1.853554613259555 0.0 25 2.0524356253566106E-4 0.0 0.0 1.9110228107695402 0.0 26 2.0524356253566106E-4 0.0 0.0 1.969927713217275 0.0 27 2.0524356253566106E-4 0.0 0.0 2.025753962226975 0.0 28 2.0524356253566106E-4 0.0 0.0 2.0943053121138857 0.0 29 2.0524356253566106E-4 0.0 0.0 2.165935315438831 0.0 30 2.0524356253566106E-4 0.0 0.0 2.262194546268056 0.0 31 2.0524356253566106E-4 0.0 0.0 2.341829048531893 0.0 32 2.0524356253566106E-4 0.0 0.0 2.438704010048725 0.0 33 2.0524356253566106E-4 0.0 0.0 2.5242905756260954 0.0 34 2.0524356253566106E-4 0.0 0.0 2.6002306937642903 0.0 35 2.0524356253566106E-4 0.0 0.0 2.6981318730938004 0.0 36 2.0524356253566106E-4 0.0 0.0 2.7956225652982396 0.0 37 2.0524356253566106E-4 0.0 0.0 2.884287784313645 0.0 38 2.0524356253566106E-4 0.0 0.0 2.993682603145152 0.0 39 2.0524356253566106E-4 0.0 0.0 3.1238070217927616 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCC 30 2.1629166E-6 45.000004 12 ACACGAC 25 3.8874867E-5 45.0 26 CGTATGA 35 1.21001E-7 45.0 2 CGCGGTA 20 7.0292805E-4 45.0 30 TACGAGT 25 3.8874867E-5 45.0 4 TGCGACG 20 7.0292805E-4 45.0 1 AGCGATA 85 0.0 45.0 8 GCGATAC 20 7.0292805E-4 45.0 9 ACGAGTC 35 1.21001E-7 45.0 5 CGATAAC 20 7.0292805E-4 45.0 16 GAGCGAT 380 0.0 43.815792 7 CGTTTTT 3560 0.0 42.977528 1 GTTTTTA 2525 0.0 41.435642 2 TAGTAAG 50 1.0786607E-9 40.5 1 AGCGATC 45 1.9243089E-8 40.000004 8 CGGTCTA 45 1.9243089E-8 40.000004 31 CACGAGT 40 3.452751E-7 39.375 4 ATTGCGA 40 3.452751E-7 39.375 2 ACGAGGT 35 6.2408817E-6 38.571426 5 GAGGGGA 3015 0.0 37.985077 7 >>END_MODULE