##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546879_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1266030 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.647902498361017 31.0 31.0 34.0 30.0 34.0 2 31.988304384572245 31.0 31.0 34.0 30.0 34.0 3 31.873996666745654 31.0 31.0 34.0 30.0 34.0 4 35.72928208652244 37.0 35.0 37.0 35.0 37.0 5 35.76567616881117 37.0 35.0 37.0 35.0 37.0 6 35.825933824632905 37.0 35.0 37.0 35.0 37.0 7 36.043647464909995 37.0 35.0 37.0 35.0 37.0 8 13.202867230634345 0.0 0.0 35.0 0.0 37.0 9 24.819365259906952 18.0 17.0 38.0 17.0 39.0 10 32.55834537886148 32.0 32.0 37.0 27.0 39.0 11 35.524448077849655 37.0 34.0 37.0 32.0 39.0 12 36.7184845540785 38.0 35.0 39.0 33.0 39.0 13 37.03581589693767 39.0 37.0 39.0 33.0 39.0 14 38.27844521851773 40.0 38.0 41.0 34.0 41.0 15 38.48566937592316 40.0 38.0 41.0 34.0 41.0 16 38.52795352400812 40.0 38.0 41.0 34.0 41.0 17 38.48453670134199 40.0 38.0 41.0 34.0 41.0 18 38.37711428639132 40.0 38.0 41.0 34.0 41.0 19 38.29863510343357 40.0 37.0 41.0 34.0 41.0 20 38.20324557869877 40.0 37.0 41.0 34.0 41.0 21 38.138183929290776 40.0 37.0 41.0 33.0 41.0 22 38.08326421964724 40.0 36.0 41.0 33.0 41.0 23 37.87409461071223 39.0 36.0 41.0 33.0 41.0 24 37.5445076341003 39.0 35.0 41.0 33.0 41.0 25 37.421565049801345 39.0 35.0 41.0 33.0 41.0 26 37.34620664597205 39.0 35.0 41.0 33.0 41.0 27 37.28169711618208 39.0 35.0 41.0 33.0 41.0 28 37.11488827278974 39.0 35.0 41.0 33.0 41.0 29 37.00029146228762 39.0 35.0 41.0 32.0 41.0 30 36.80967117682835 39.0 35.0 41.0 31.0 41.0 31 36.61172484064359 39.0 35.0 41.0 31.0 41.0 32 36.24016413513108 39.0 35.0 41.0 30.0 41.0 33 35.80535137398008 39.0 35.0 41.0 26.0 41.0 34 35.354565847570754 39.0 35.0 41.0 23.0 41.0 35 34.99826781355892 39.0 35.0 41.0 21.0 41.0 36 34.805776324415696 39.0 35.0 41.0 20.0 41.0 37 34.72421032676951 39.0 35.0 41.0 18.0 41.0 38 34.597840493511214 39.0 34.0 40.0 18.0 41.0 39 34.47684494048324 38.0 34.0 40.0 18.0 41.0 40 34.346141876574805 38.0 34.0 40.0 18.0 41.0 41 34.23732060061768 38.0 34.0 40.0 17.0 41.0 42 34.15410298334163 38.0 34.0 40.0 17.0 41.0 43 34.02692432248841 38.0 33.0 40.0 15.0 41.0 44 33.82163376855209 38.0 33.0 40.0 15.0 41.0 45 33.72802461237095 38.0 33.0 40.0 15.0 41.0 46 33.68372708387637 38.0 33.0 40.0 15.0 41.0 47 33.639800794609926 37.0 33.0 40.0 15.0 41.0 48 33.5315821899955 37.0 33.0 40.0 15.0 41.0 49 33.425749784760235 37.0 33.0 40.0 15.0 41.0 50 33.33111379667149 37.0 33.0 40.0 15.0 41.0 51 32.983251581716075 36.0 32.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 5.0 13 4.0 14 10.0 15 35.0 16 72.0 17 243.0 18 531.0 19 1207.0 20 2278.0 21 3887.0 22 6411.0 23 10144.0 24 16475.0 25 25757.0 26 33011.0 27 34588.0 28 30980.0 29 28828.0 30 30301.0 31 34782.0 32 42959.0 33 57340.0 34 82971.0 35 120799.0 36 135767.0 37 212881.0 38 245551.0 39 108190.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.26880089729311 20.308918430052998 22.658783757098963 23.763496915554924 2 41.94292394335047 21.571842689351755 24.33733797777304 12.147895389524734 3 28.204544915997253 22.392281383537515 37.083639408228876 12.319534292236362 4 24.81039153890508 24.44973657812216 36.18926881669471 14.55060306627805 5 21.211345702708467 28.232664312851984 35.97110652986106 14.584883454578485 6 19.69471497515857 36.14472010931811 34.46498108259678 9.69558383292655 7 75.44386783883478 4.368932805699707 17.732044264353924 2.455155091111585 8 28.094357953602994 63.96688862033285 6.591313002061562 1.3474404240025908 9 69.92227672330039 5.7302749539900315 19.908453986082478 4.438994336627093 10 36.13445179024194 24.885745203510183 25.074366326232393 13.905436680015482 11 29.524655813843275 22.832634297765455 31.67910713016279 15.963602758228479 12 25.913209007685438 20.745874900278825 36.50174166488946 16.839174427146276 13 22.240231274140424 23.02354604551235 37.37486473464294 17.361357945704288 14 18.586605372700486 26.471647591289305 38.29711776182239 16.644629274187817 15 18.08235191899086 21.99276478440479 42.61960617046989 17.305277126134452 16 20.738213154506607 20.81293492255318 40.47463330252838 17.97421862041184 17 20.78370970672101 20.470131039548825 36.16470383798172 22.58145541574844 18 22.105716294242633 22.072857673198897 36.7559220555595 19.065503976998965 19 24.389074508502958 22.98081404074153 33.84880295095693 18.781308499798584 20 25.553975814159223 22.903722660600458 32.71920886550871 18.823092659731604 21 23.916020947370914 23.50528818432423 34.63622504995932 17.94246581834554 22 22.112588169316684 21.22959171583612 35.233367297773356 21.424452817073846 23 21.073750227087825 23.764207799183275 34.55076104041768 20.611280933311214 24 21.2679004446972 22.995663609867066 36.39692582324274 19.339510122192998 25 21.53803622347022 22.66597158045228 35.393948010710645 20.402044185366854 26 19.757114760313737 24.457951233383096 34.30992946454665 21.475004541756515 27 20.09612726396689 23.080416735780354 36.137295324755335 20.68616067549742 28 19.31763070385378 23.58443322828053 37.67943887585602 19.418497192009667 29 20.5917711270665 23.745882798985807 36.42907356065812 19.233272513289574 30 21.786608532183283 22.900563177807793 36.257908580365395 19.05491970964353 31 24.8114183708127 22.27474862365031 33.0816015418276 19.83223146370939 32 24.79072375852073 23.49644163250476 32.8409279400962 18.871906668878307 33 23.52866835698996 23.86941857617908 32.04276359959874 20.559149467232213 34 21.37998309676706 25.786671721839134 32.92591802721894 19.90742715417486 35 21.113638697345245 26.086190690583948 32.2978918351066 20.50227877696421 36 23.846433338862425 26.548344036081296 29.449855058726886 20.155367566329392 37 21.686215966446294 27.33023704019652 29.774096980324323 21.209450013032864 38 21.617418228635973 28.84789459965404 28.034011832263054 21.500675339446932 39 21.511417580942 26.40980071562285 28.837547293508052 23.241234409927095 40 22.482484617268153 25.163068805636517 29.90821702487303 22.446229552222302 41 20.790897530074325 25.1539852926076 29.888391270349047 24.16672590696903 42 22.09647480707408 26.77464199110606 28.467887806766036 22.660995395053828 43 21.843479222451283 25.671429586976615 29.270396436103407 23.21469475446869 44 21.8032748039146 26.860342961857143 30.117295798677755 21.219086435550498 45 21.329352385014573 27.59097335766135 29.423394390338302 21.656279866985777 46 22.534695070416973 26.368411491038916 30.14375646706634 20.95313697147777 47 21.617418228635973 26.44384414271384 30.46144246186899 21.4772951667812 48 21.72871101000766 25.807603295340552 30.9352858936992 21.528399800952585 49 21.8397668301699 25.198218051704934 31.199102706886883 21.76291241123828 50 20.43277015552554 26.112414397763082 32.00374398710931 21.451071459602066 51 20.718624361192074 26.77116656003412 30.98062447177397 21.529584606999837 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 935.0 1 1938.0 2 2941.0 3 26422.0 4 49903.0 5 34113.0 6 18323.0 7 17868.0 8 17413.0 9 17371.0 10 17329.0 11 16836.5 12 16344.0 13 15472.5 14 14601.0 15 13780.0 16 12959.0 17 12152.0 18 11345.0 19 10716.0 20 10087.0 21 9737.5 22 9388.0 23 9463.5 24 9539.0 25 10073.0 26 11569.5 27 12532.0 28 14199.5 29 15867.0 30 17278.0 31 18689.0 32 21209.5 33 23730.0 34 26410.0 35 29090.0 36 31665.5 37 34241.0 38 39957.0 39 45673.0 40 52169.5 41 58666.0 42 63662.5 43 68659.0 44 72642.0 45 76625.0 46 82047.0 47 87469.0 48 87231.5 49 86994.0 50 84337.0 51 81680.0 52 76719.0 53 71758.0 54 69099.0 55 66440.0 56 63822.0 57 61204.0 58 58417.0 59 55630.0 60 51629.0 61 47628.0 62 42474.0 63 37320.0 64 32253.5 65 27187.0 66 23356.0 67 19525.0 68 16844.0 69 14163.0 70 12130.0 71 10097.0 72 8341.5 73 6586.0 74 5078.0 75 2625.5 76 1681.0 77 1272.0 78 863.0 79 661.5 80 460.0 81 295.5 82 131.0 83 111.0 84 91.0 85 62.5 86 34.0 87 24.0 88 14.0 89 13.0 90 12.0 91 8.0 92 4.0 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1266030.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.88828639295647 #Duplication Level Percentage of deduplicated Percentage of total 1 69.51392383858057 27.03277378532885 2 8.469822117851237 6.587537364327921 3 4.657915800119995 5.434150908880301 4 3.4701477027644057 5.397923907638488 5 2.6631819369849534 5.178329094100972 6 2.146538775647921 5.008512879658951 7 1.7186987226714325 4.678607370531859 8 1.382634539799948 4.3014630368427165 9 1.1380882584259688 3.9832471920717123 >10 4.780513052027555 26.80368076654084 >50 0.03134232290402144 0.8331643074569828 >100 0.02472084934257643 1.8748750128318508 >500 0.0020600690662232746 0.5228946519452344 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.120138132446549E-4 2.362839721843534 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19015 1.5019391325639992 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10479 0.8277055046088956 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008451616470383798 0.0 2 0.0 0.0 0.0 0.048656035007069345 0.0 3 0.0 0.0 0.0 0.09123006563825502 0.0 4 0.0 0.0 0.0 0.13088157468622386 0.0 5 0.0 0.0018167026057834333 0.0 0.22661390330402914 0.0 6 0.0 0.0018167026057834333 0.0 0.41831552174908965 0.0 7 0.0 0.0018167026057834333 0.0 0.5566218809980806 0.0 8 0.0 0.0018167026057834333 0.0 0.7529047494925081 0.0 9 0.0 0.0018167026057834333 0.0 1.111585033530011 0.0 10 0.0 0.0018167026057834333 0.0 1.5900887024794041 0.0 11 0.0 0.0018167026057834333 0.0 1.871282671026753 0.0 12 0.0 0.0018167026057834333 0.0 2.198921036626304 0.0 13 0.0 0.0018167026057834333 0.0 2.346626857183479 0.0 14 0.0 0.0018167026057834333 0.0 2.4403845090558676 0.0 15 0.0 0.0018167026057834333 0.0 2.511867807239955 0.0 16 0.0 0.0018167026057834333 0.0 2.5986745969684764 0.0 17 0.0 0.0018167026057834333 0.0 2.685876322046081 0.0 18 0.0 0.0018167026057834333 0.0 2.8542767548952237 0.0 19 0.0 0.0018167026057834333 0.0 2.927813716894544 0.0 20 0.0 0.0018167026057834333 0.0 3.0096443212246156 0.0 21 0.0 0.0018167026057834333 0.0 3.0943974471379034 0.0 22 0.0 0.0018167026057834333 0.0 3.1800984178889915 0.0 23 0.0 0.0018167026057834333 0.0 3.2827026215808472 0.0 24 0.0 0.0018167026057834333 0.0 3.3685615664715685 0.0 25 0.0 0.0018167026057834333 0.0 3.4423354896803393 0.0 26 0.0 0.0018167026057834333 0.0 3.51705725772691 0.0 27 0.0 0.0018167026057834333 0.0 3.6012574741514816 0.0 28 0.0 0.0018167026057834333 0.0 3.688459199229086 0.0 29 0.0 0.0018167026057834333 0.0 3.782611786450558 0.0 30 0.0 0.0018167026057834333 0.0 3.9039359256889647 0.0 31 0.0 0.0018167026057834333 0.0 3.998404461189703 0.0 32 0.0 0.0018167026057834333 0.0 4.112698751214427 0.0 33 0.0 0.0018167026057834333 0.0 4.223043687748316 0.0 34 0.0 0.0018167026057834333 0.0 4.328886361302655 0.0 35 0.0 0.0018167026057834333 0.0 4.447524940167295 0.0 36 0.0 0.0018167026057834333 0.0 4.552498755953651 0.0 37 0.0 0.0018167026057834333 0.0 4.66639811062929 0.0 38 0.0 0.0018167026057834333 0.0 4.798859426711847 0.0 39 0.0 0.0018167026057834333 0.0 4.949882704201322 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTACGG 30 2.165676E-6 45.000004 2 GCGATAT 95 0.0 45.0 9 CGTTTTT 16885 0.0 43.85401 1 GTTTTTA 11210 0.0 42.95272 2 ATTGCGA 125 0.0 41.4 2 GAGCGAT 1000 0.0 40.725002 7 CGTAAGA 105 0.0 40.714283 2 ACGTTAG 50 1.0822987E-9 40.5 1 TATTTTT 12545 0.0 39.475887 7 TAACGAG 160 0.0 39.375004 3 TTATTTT 12580 0.0 39.34817 6 ACGACGG 230 0.0 39.130436 27 AGCGATA 250 0.0 38.7 8 TTTTATT 12820 0.0 38.681747 4 TTTATTT 12875 0.0 38.56893 5 CGGTCTA 240 0.0 38.437504 31 AGACTTA 905 0.0 38.038677 8 ATAACGC 125 0.0 37.800003 11 TTTTTAT 13280 0.0 37.528236 3 CTCACGA 240 0.0 37.500004 24 >>END_MODULE