SRR1546878_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546878_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1230833
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13411	1.0895872957582386	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7338	0.5961816103403142	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	2334	0.18962767491609342	No Hit
GAATCTGACTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	2284	0.1855653853934693	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	1481	0.12032501566012611	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1232	0.10009481383745804	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGATC	20	7.0334825E-4	45.0	11
CTACCGT	20	7.0334825E-4	45.0	29
TAATGCG	20	7.0334825E-4	45.0	1
CGTTTTT	10435	0.0	43.33972	1
TGTACGA	110	0.0	42.954548	2
GTTTTTA	6965	0.0	42.286434	2
CGGTCTA	220	0.0	41.93182	31
TCGATAG	55	6.184564E-11	40.909092	1
GAGCGAT	1015	0.0	40.788177	7
TATACGG	50	1.0822987E-9	40.500004	2
CGTTAGA	85	0.0	39.705883	2
CGAGAAT	120	0.0	39.375004	6
TATTTTT	8025	0.0	38.887848	7
AGGGGAA	6460	0.0	38.86997	8
AGCGATC	180	0.0	38.75	8
CGACGGT	250	0.0	38.7	28
ATAACGC	70	0.0	38.571426	11
TAATCGG	35	6.2486506E-6	38.571426	2
TTTTATT	8120	0.0	38.46059	4
TTATTTT	8110	0.0	38.45253	6