##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546878_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1230833 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.660408845066716 31.0 31.0 34.0 30.0 34.0 2 31.999384969366275 31.0 31.0 34.0 30.0 34.0 3 31.95172293885523 31.0 31.0 34.0 30.0 34.0 4 35.763983416109255 37.0 35.0 37.0 35.0 37.0 5 35.77240372983175 37.0 35.0 37.0 35.0 37.0 6 35.81616596240107 37.0 35.0 37.0 35.0 37.0 7 36.014460938242635 37.0 35.0 37.0 35.0 37.0 8 13.293542665820627 0.0 0.0 35.0 0.0 37.0 9 24.893188596665834 18.0 17.0 38.0 17.0 39.0 10 32.54539730410218 32.0 32.0 37.0 27.0 39.0 11 35.487118886152714 37.0 34.0 37.0 32.0 39.0 12 36.631714456794704 37.0 35.0 39.0 33.0 39.0 13 36.91168907560977 39.0 37.0 39.0 33.0 39.0 14 38.13260856671864 40.0 37.0 41.0 33.0 41.0 15 38.34923096797047 40.0 37.0 41.0 34.0 41.0 16 38.42022516458366 40.0 38.0 41.0 34.0 41.0 17 38.35694931806346 40.0 37.0 41.0 34.0 41.0 18 38.28327563528115 40.0 37.0 41.0 33.0 41.0 19 38.23886506130401 40.0 37.0 41.0 34.0 41.0 20 38.15353991971291 40.0 37.0 41.0 34.0 41.0 21 38.12346922775064 40.0 37.0 41.0 33.0 41.0 22 38.06012838459807 40.0 36.0 41.0 33.0 41.0 23 37.89507837375176 39.0 36.0 41.0 33.0 41.0 24 37.69400722925043 40.0 35.0 41.0 33.0 41.0 25 37.597206932215826 39.0 35.0 41.0 33.0 41.0 26 37.50899756506366 39.0 35.0 41.0 33.0 41.0 27 37.44133363340112 39.0 35.0 41.0 33.0 41.0 28 37.31560171038638 39.0 35.0 41.0 33.0 41.0 29 37.2706272906235 39.0 35.0 41.0 33.0 41.0 30 37.13138744248813 39.0 35.0 41.0 32.0 41.0 31 37.01209343590885 39.0 35.0 41.0 32.0 41.0 32 36.74587129204368 39.0 35.0 41.0 31.0 41.0 33 36.47121421021373 39.0 35.0 41.0 30.0 41.0 34 36.14562657972284 39.0 35.0 41.0 29.0 41.0 35 35.908402683385965 39.0 35.0 41.0 27.0 41.0 36 35.75156499703859 39.0 35.0 41.0 26.0 41.0 37 35.677281970827885 39.0 35.0 41.0 26.0 41.0 38 35.56683481837097 39.0 35.0 41.0 25.0 41.0 39 35.46085699684685 39.0 35.0 41.0 24.0 41.0 40 35.356169358475114 39.0 35.0 40.0 24.0 41.0 41 35.26706385025426 39.0 35.0 40.0 24.0 41.0 42 35.190689557397306 39.0 35.0 40.0 23.0 41.0 43 35.07249968111027 38.0 35.0 40.0 23.0 41.0 44 34.89488988351791 38.0 34.0 40.0 23.0 41.0 45 34.82526142864223 38.0 34.0 40.0 23.0 41.0 46 34.787391140796515 38.0 34.0 40.0 23.0 41.0 47 34.71024013818284 38.0 34.0 40.0 23.0 41.0 48 34.627054198254356 38.0 34.0 40.0 23.0 41.0 49 34.52083101444306 38.0 34.0 40.0 23.0 41.0 50 34.410133624951555 37.0 34.0 40.0 22.0 41.0 51 34.053038064465284 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 5.0 12 1.0 13 7.0 14 12.0 15 24.0 16 55.0 17 177.0 18 430.0 19 938.0 20 1781.0 21 3123.0 22 5148.0 23 8102.0 24 12438.0 25 18210.0 26 23108.0 27 24379.0 28 23350.0 29 23370.0 30 26644.0 31 32628.0 32 42288.0 33 57642.0 34 84824.0 35 125395.0 36 133777.0 37 214398.0 38 257935.0 39 110626.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.9162721506492 20.504162628073832 25.17652679120563 19.403038430071344 2 37.386550409356914 23.683879129012627 26.603446608922575 12.326123852707882 3 28.432045614636593 24.46156383522379 34.342189395311955 12.764201154827665 4 25.182213996537307 25.099749519228038 34.588607877754335 15.129428606480328 5 22.8122742890384 29.267739815230826 32.782676447576556 15.137309448154218 6 20.24645098075856 38.14051134475595 31.414253598985404 10.198784075500088 7 79.1121135036191 4.699175273981117 13.744106633475054 2.444604588924736 8 29.620590283165953 63.9607485337166 4.914801601842004 1.5038595812754452 9 73.94301257766081 5.346216749144685 15.18548820189254 5.5252824713019555 10 40.780105830766644 23.00962031404748 21.370648983249556 14.839624871936321 11 34.21243986795935 22.21593018711718 27.383162459895043 16.188467485028433 12 30.223352802532922 20.390337275649905 31.98565524323771 17.400654678579468 13 23.080791626483855 25.754834327646396 33.31938613930566 17.844987906564093 14 18.82001863778433 29.949473242917602 34.05352310183429 17.17698501746378 15 17.91924655903766 22.441630992994174 41.87968635875054 17.75943608921763 16 20.461346096505377 20.632530976988754 39.43240065874087 19.473722267765 17 20.554291280783016 20.7388004709006 32.70492422611353 26.00198402220285 18 22.614197051915248 22.619234290923302 34.05368559341519 20.71288306374626 19 25.390203220095657 24.344488651181763 30.029500346513295 20.235807782209285 20 27.100670846491763 23.681847984251316 28.834456014747733 20.383025154509184 21 24.159248248950103 25.714780152953328 31.496068109971056 18.62990348812552 22 22.906844389125087 21.68628887915745 31.848106120001656 23.558760611715808 23 22.190175271543744 25.5110157104985 30.280874822173274 22.01793419578448 24 22.09292406037212 23.94784670219274 34.200090507810565 19.75913872962457 25 21.23829959060246 24.04201057332717 32.75895267676444 21.960737159305936 26 19.183024829526023 25.961442372767063 31.785790598724606 23.069742198982315 27 21.235780971098436 24.766723024163312 31.89725982322541 22.100236181512845 28 19.6176898084468 25.16767100004631 35.371248577183096 19.843390614323795 29 20.905273095537737 23.722145896315748 35.19860127247157 20.173979735674948 30 21.932707361599828 24.572789322353238 33.63908832473618 19.855414991310763 31 25.89855813095684 23.604989466483268 29.49547176586913 21.000980636690763 32 26.281875770311654 23.950771550649034 30.634943976965197 19.132408702074123 33 25.460643320417958 23.88658737619157 29.563230755106503 21.08953854828397 34 21.049321882009988 25.90993254162019 32.03667759964187 21.004067976727956 35 21.867791975028293 25.35851736181919 31.019480303176795 21.754210359975723 36 24.915890295434068 26.300562302115722 28.576906859013366 20.206640543436844 37 22.550337860619596 27.71643269233113 29.09379257787206 20.639436869177217 38 22.066194195313255 28.97631116487777 26.54763075088172 22.409863888927255 39 21.87542907933083 27.21498367365841 27.14129374171801 23.768293505292757 40 22.426519275970016 24.51372363269428 28.77896513986869 24.280791951467016 41 20.61303198728016 24.723419017852137 28.585681404382235 26.07786759048547 42 22.19033776312465 26.28577556825337 27.436134715270065 24.087751953351916 43 22.172219951853744 25.6796007256874 27.593995286119238 24.554184036339617 44 21.99266675495376 26.856121017229796 28.97241136693605 22.178800860880397 45 21.12398676343582 27.82383962730931 28.039384709379746 23.012788899875126 46 22.788631764016724 27.255606568884648 28.93349463330931 21.022267033789312 47 21.936038439008378 25.94844304629466 29.64528900346351 22.47022951123345 48 22.567561968195523 25.173276959587533 29.660644457859025 22.59851661435792 49 22.20244338590207 24.19580885465372 30.96309572460277 22.638652034841446 50 20.5750089573484 26.171868970038993 30.665898623127593 22.587223449485023 51 21.008049020460128 27.207671552517688 28.994835205100937 22.78944422192125 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1119.0 1 1889.5 2 2660.0 3 17984.5 4 33309.0 5 22311.0 6 11313.0 7 11130.0 8 10947.0 9 10932.5 10 10918.0 11 10779.0 12 10640.0 13 10209.5 14 9779.0 15 9214.5 16 8650.0 17 8076.0 18 7502.0 19 7160.5 20 6819.0 21 6759.5 22 6700.0 23 7390.5 24 8081.0 25 8338.5 26 9534.5 27 10473.0 28 11890.0 29 13307.0 30 15313.0 31 17319.0 32 19247.0 33 21175.0 34 24106.5 35 27038.0 36 30003.0 37 32968.0 38 40173.0 39 47378.0 40 57156.0 41 66934.0 42 75125.0 43 83316.0 44 90758.5 45 98201.0 46 95782.5 47 93364.0 48 90113.5 49 86863.0 50 83911.0 51 80959.0 52 76617.0 53 72275.0 54 70100.5 55 67926.0 56 65664.5 57 63403.0 58 59278.5 59 55154.0 60 50314.0 61 45474.0 62 40509.0 63 35544.0 64 30276.5 65 25009.0 66 21138.5 67 17268.0 68 14729.5 69 12191.0 70 10373.0 71 8555.0 72 7071.0 73 5587.0 74 4344.0 75 2347.0 76 1593.0 77 1184.5 78 776.0 79 562.5 80 349.0 81 272.0 82 195.0 83 131.0 84 67.0 85 42.5 86 18.0 87 16.0 88 14.0 89 8.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1230833.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.10044542478035 #Duplication Level Percentage of deduplicated Percentage of total 1 70.828389065943 22.736228377364124 2 7.01650198918705 4.504656783535233 3 3.7132958374597638 3.575953511293236 4 2.6002384277262545 3.338752469625731 5 1.9998733917449214 3.209841333408911 6 1.7613221592187436 3.392353550847453 7 1.4401368198780362 3.2360323373498137 8 1.294032291349732 3.323121035710043 9 1.1536963024137727 3.333074867316377 >10 8.105043028455798 43.829154285907066 >50 0.0593417395945915 1.2053789562873547 >100 0.025316052393530866 1.6968104542404254 >500 0.001022870776292435 0.22787217626498743 >1k 0.0012785884703655438 0.6875566816986798 >5k 2.5571769407310875E-4 0.6023508751557918 >10k+ 2.5571769407310875E-4 1.1008623039948655 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13411 1.0895872957582386 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7338 0.5961816103403142 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG 2334 0.18962767491609342 No Hit GAATCTGACTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 2284 0.1855653853934693 No Hit GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 1481 0.12032501566012611 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1232 0.10009481383745804 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011780639615609916 0.0 2 0.0 0.0 0.0 0.055572120669497814 0.0 3 0.0 0.0 0.0 0.09635750747664387 0.0 4 0.0 0.0 0.0 0.17362225419695443 0.0 5 0.0 0.0 0.0 0.39006103996236696 0.0 6 0.0 0.0 0.0 0.5870820818096363 0.0 7 0.0 0.0 0.0 0.7226000602843765 0.0 8 0.0 0.0 0.0 0.9918486098439024 0.0 9 0.0 0.0 0.0 1.3925528483555445 0.0 10 0.0 0.0 0.0 2.1406640868420004 0.0 11 0.0 0.0 0.0 2.4524854305986272 0.0 12 0.0 0.0 0.0 2.817279029730272 0.0 13 0.0 0.0 0.0 2.970427344733201 0.0 14 0.0 0.0 0.0 3.0476108456630593 0.0 15 0.0 0.0 0.0 3.1250380839642746 0.0 16 0.0 0.0 0.0 3.232607510523361 0.0 17 0.0 0.0 0.0 3.3436705060719043 0.0 18 0.0 0.0 0.0 3.5412602684523407 0.0 19 0.0 0.0 0.0 3.645742354974233 0.0 20 0.0 0.0 0.0 3.7408811755940894 0.0 21 0.0 0.0 0.0 3.8404072688983804 0.0 22 0.0 0.0 0.0 3.95626376608362 0.0 23 0.0 0.0 0.0 4.0725264922211215 0.0 24 0.0 0.0 0.0 4.1666091175650966 0.0 25 0.0 0.0 0.0 4.249073594874366 0.0 26 0.0 0.0 0.0 4.339093930695716 0.0 27 0.0 0.0 0.0 4.437320091352767 0.0 28 0.0 0.0 0.0 4.535465006219365 0.0 29 0.0 0.0 0.0 4.631822513696009 0.0 30 0.0 0.0 0.0 4.771565273274279 0.0 31 0.0 0.0 0.0 4.881003353013772 0.0 32 0.0 0.0 0.0 5.0081530150719065 0.0 33 0.0 0.0 0.0 5.130590421283797 0.0 34 0.0 0.0 0.0 5.2441720363363675 0.0 35 0.0 0.0 0.0 5.370346748909072 0.0 36 0.0 0.0 0.0 5.4996088015189715 0.0 37 0.0 0.0 0.0 5.624727318815794 0.0 38 0.0 0.0 0.0 5.784375297054921 0.0 39 0.0 0.0 0.0 5.960353679174998 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGATC 20 7.0334825E-4 45.0 11 CTACCGT 20 7.0334825E-4 45.0 29 TAATGCG 20 7.0334825E-4 45.0 1 CGTTTTT 10435 0.0 43.33972 1 TGTACGA 110 0.0 42.954548 2 GTTTTTA 6965 0.0 42.286434 2 CGGTCTA 220 0.0 41.93182 31 TCGATAG 55 6.184564E-11 40.909092 1 GAGCGAT 1015 0.0 40.788177 7 TATACGG 50 1.0822987E-9 40.500004 2 CGTTAGA 85 0.0 39.705883 2 CGAGAAT 120 0.0 39.375004 6 TATTTTT 8025 0.0 38.887848 7 AGGGGAA 6460 0.0 38.86997 8 AGCGATC 180 0.0 38.75 8 CGACGGT 250 0.0 38.7 28 ATAACGC 70 0.0 38.571426 11 TAATCGG 35 6.2486506E-6 38.571426 2 TTTTATT 8120 0.0 38.46059 4 TTATTTT 8110 0.0 38.45253 6 >>END_MODULE