SRR1546876_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546876_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1194561
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12945	1.0836616966400208	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7295	0.6106845945916534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATACG	20	7.0333976E-4	45.0	1
CGTTTTT	11140	0.0	43.54578	1
TTTAGCG	115	0.0	43.04348	1
GTTTTTA	7665	0.0	42.299416	2
TATACGA	55	6.184564E-11	40.909092	2
CGACGGT	195	0.0	40.384617	28
ATAACGC	95	0.0	40.263157	11
CGGTCTA	200	0.0	39.375004	31
TATGCGA	80	0.0	39.375	2
GCGTAAG	40	3.4583718E-7	39.375	1
GAGCGAT	970	0.0	38.96907	7
TATTTTT	8680	0.0	38.75288	7
TCGTTTA	70	0.0	38.571426	38
GCCGACC	70	0.0	38.571426	14
TTATTTT	8800	0.0	38.454544	6
CGTAGGA	65	9.094947E-12	38.07692	2
TTTTATT	8960	0.0	37.943638	4
AGGGGAA	6675	0.0	37.55056	8
CTCACGA	210	0.0	37.5	24
TACGCAA	30	1.139949E-4	37.499996	1