SRR1546874_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546874_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1355750
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18464	1.361903005716393	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10273	0.7577355707173151	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACGA	45	3.8562575E-10	45.0	2
ATACGCG	20	7.033737E-4	45.0	1
CGTTTTT	17135	0.0	43.87073	1
GTTTTTA	11950	0.0	42.702927	2
TATGCGA	55	6.184564E-11	40.90909	2
AACCGAT	45	1.9286745E-8	40.0	8
TATTTTT	13175	0.0	39.586338	7
TTATTTT	13225	0.0	39.436676	6
TTTTATT	13440	0.0	39.22433	4
TTTATTT	13465	0.0	38.91756	5
ATACGAG	145	0.0	38.793102	3
ACGAGTA	100	0.0	38.25	5
ATAACGC	130	0.0	38.076927	11
TTTTTAT	13885	0.0	37.870007	3
GAGCGAT	1130	0.0	37.63274	7
TACGTAG	90	0.0	37.5	1
GTTTCGT	55	2.750312E-9	36.81818	43
TTCGAAT	80	0.0	36.5625	16
AGACTTA	925	0.0	36.486485	8
GCGCGAC	675	0.0	36.333332	9