##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546872_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 981888 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.644083642940945 31.0 31.0 34.0 30.0 34.0 2 31.99156013720506 31.0 31.0 34.0 30.0 34.0 3 31.82846210565767 31.0 31.0 34.0 30.0 34.0 4 35.709802951049404 37.0 35.0 37.0 35.0 37.0 5 35.752288448377 37.0 35.0 37.0 35.0 37.0 6 35.80565298689871 37.0 35.0 37.0 35.0 37.0 7 36.02766710663538 37.0 35.0 37.0 35.0 37.0 8 13.26417575120584 0.0 0.0 35.0 0.0 37.0 9 24.858562280015644 18.0 17.0 38.0 17.0 39.0 10 32.5971006876548 32.0 32.0 37.0 27.0 39.0 11 35.53601429083562 37.0 35.0 37.0 32.0 39.0 12 36.71794033535393 38.0 35.0 39.0 33.0 39.0 13 37.033000708838486 39.0 37.0 39.0 33.0 39.0 14 38.25432737746056 40.0 37.0 41.0 33.0 41.0 15 38.45701240874723 40.0 38.0 41.0 34.0 41.0 16 38.48579573230348 40.0 38.0 41.0 34.0 41.0 17 38.40393812736279 40.0 38.0 41.0 33.0 41.0 18 38.278808784708644 40.0 37.0 41.0 33.0 41.0 19 38.19253112371268 40.0 37.0 41.0 34.0 41.0 20 38.091254807065575 40.0 36.0 41.0 34.0 41.0 21 38.056296644831185 40.0 36.0 41.0 33.0 41.0 22 37.99776349237388 40.0 36.0 41.0 33.0 41.0 23 37.76886976926085 39.0 36.0 41.0 33.0 41.0 24 37.37422598096728 39.0 35.0 41.0 33.0 41.0 25 37.248902115108855 39.0 35.0 41.0 33.0 41.0 26 37.16796009320819 39.0 35.0 41.0 33.0 41.0 27 37.12192225589884 39.0 35.0 41.0 33.0 41.0 28 36.92277428790249 39.0 35.0 41.0 33.0 41.0 29 36.79921335223569 39.0 35.0 41.0 32.0 41.0 30 36.57929315767175 39.0 35.0 41.0 31.0 41.0 31 36.35999523367227 39.0 35.0 41.0 31.0 41.0 32 35.92956834180681 39.0 35.0 41.0 29.0 41.0 33 35.42622580172077 39.0 35.0 41.0 24.0 41.0 34 34.88769289369052 39.0 35.0 41.0 21.0 41.0 35 34.48129827434494 38.0 34.0 41.0 18.0 41.0 36 34.274280773367224 38.0 34.0 40.0 16.0 41.0 37 34.19748688241429 38.0 34.0 40.0 15.0 41.0 38 34.05379839655847 38.0 34.0 40.0 15.0 41.0 39 33.92881265480381 38.0 33.0 40.0 15.0 41.0 40 33.80512645026724 38.0 33.0 40.0 15.0 41.0 41 33.68074464704732 38.0 33.0 40.0 13.0 41.0 42 33.59447411517403 38.0 33.0 40.0 12.0 41.0 43 33.46112998631209 38.0 33.0 40.0 12.0 41.0 44 33.214639551557816 37.0 33.0 40.0 10.0 41.0 45 33.15016172924 37.0 33.0 40.0 10.0 41.0 46 33.126774133098685 37.0 33.0 40.0 10.0 41.0 47 33.08981370584018 37.0 32.0 40.0 11.0 41.0 48 33.00094919176118 37.0 32.0 40.0 11.0 41.0 49 32.89347461217573 36.0 32.0 40.0 10.0 41.0 50 32.795351404640854 36.0 32.0 40.0 10.0 41.0 51 32.464497987550516 36.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 2.0 12 3.0 13 3.0 14 13.0 15 18.0 16 61.0 17 188.0 18 475.0 19 1030.0 20 1876.0 21 3418.0 22 5501.0 23 8899.0 24 14728.0 25 22400.0 26 29125.0 27 30286.0 28 27060.0 29 24245.0 30 24728.0 31 28080.0 32 34156.0 33 45619.0 34 65261.0 35 92783.0 36 102427.0 37 160374.0 38 180256.0 39 78855.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.540244915917093 20.065832355625083 23.45858183418068 25.935340894277147 2 43.953281840698736 21.101693879546342 23.100190653109113 11.844833626645809 3 26.914067592230477 22.06850475818016 38.65970456915656 12.357723080432798 4 24.2261846564985 23.51388345717638 38.33716269065311 13.92276919567201 5 21.303549895711118 26.679723145613348 37.8915925237909 14.12513443488463 6 19.330717963759614 34.647230641376616 36.20392549863121 9.818125896232564 7 73.14724286272977 4.257613903011341 20.234487029070525 2.3606562051883717 8 27.49203575153174 63.73802307391474 7.428240288098031 1.3417008864554816 9 67.51146770303741 5.9362167579194365 21.986112469039238 4.566203070003911 10 35.77852056446356 23.492088710728716 27.33091757919437 13.398473145613348 11 29.542676965193586 21.872759418589492 33.31265887759093 15.271904738625993 12 26.636235497327597 18.836262384304522 37.77538782427324 16.752114294094643 13 22.816858949289532 20.948417742145743 38.26414010559249 17.970583202972232 14 18.45108607091644 24.52591334245861 39.64780097119019 17.375199615434756 15 18.569225818015905 20.808686937817754 43.40383017207665 17.21825707208969 16 21.980307326293833 19.05156188893234 41.58997767566158 17.37815310911224 17 20.96155569678008 19.68177633294225 38.33431104158519 21.022356928692478 18 22.90342686742276 20.897088058923217 37.9171555207926 18.282329552861427 19 24.422133685308303 23.403993123451965 34.46828966236475 17.705583528874982 20 25.508204601746836 22.615817690001304 34.14859943292922 17.727378275322643 21 24.056307847738235 23.37710614652588 35.87608770043019 16.690498305305695 22 21.609592947464478 20.633819743188635 37.13641474384044 20.620172565506454 23 21.556328216660148 23.005577010819973 36.005735888410904 19.432358884108982 24 22.301219691044192 21.760526658845 37.301606700560555 18.636646949550254 25 22.20334702124886 21.647988365271804 35.74480999869639 20.403854614782947 26 19.272259157867293 23.21537690653109 36.30607564202842 21.2062882935732 27 19.947692608525617 21.434012840568375 37.12103620779559 21.497258343110413 28 19.460569840959458 23.427824762090992 37.967059379481164 19.144546017468386 29 21.430040900795202 23.28310357189415 36.93883620127754 18.34801932603311 30 21.86899116803546 22.076244948507366 37.45131827662625 18.60344560683092 31 24.567975166210402 21.459168459131796 34.394961543475425 19.577894831182373 32 25.103881501759872 22.763696063094773 34.119879253030895 18.012543182114456 33 24.176993710076914 22.822867781254075 32.98746903923869 20.01266946943032 34 21.139580074305826 25.240760657019944 34.785026398122795 18.834632870551427 35 21.557957730413243 25.302172956589754 33.30277995046278 19.83708936253422 36 22.96494101160214 27.634210826489376 30.422919925694174 18.977928236214314 37 23.240532525094512 27.542754367096855 29.70389698214053 19.5128161256681 38 22.692710370225523 28.336429409464216 28.587272682831443 20.383587537478817 39 23.301028223178204 25.79825804979794 28.55142338026333 22.349290346760526 40 22.926138215356538 24.433540281579976 30.822354484421847 21.81796701864164 41 20.823556250814757 25.529795658975363 30.398171685569025 23.248476404640854 42 21.909932701081996 27.111238756355107 28.508241265806284 22.470587276756614 43 21.54746773562769 25.615345131012905 29.512938339199586 23.32424879415982 44 22.043756518055012 25.95713564072481 30.183585093208187 21.815522748011993 45 21.708484063355495 26.23955074305827 29.92255735888411 22.129407834702125 46 22.165358981879805 26.812630361100247 30.059130980315473 20.96287967670447 47 21.510192608525617 26.410955220962062 30.800967116412465 21.27788505409986 48 21.478315245730677 25.28119296701864 31.760750716986053 21.479741070264634 49 22.09416959979142 24.5143030569678 31.81197855559901 21.579548787641766 50 20.40253063485856 24.728482270890368 32.61573621431365 22.25325087993743 51 20.40589150697432 25.740512156172596 32.28423201016817 21.569364326684916 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 735.0 1 1636.0 2 2537.0 3 23991.5 4 45446.0 5 31049.0 6 16652.0 7 16250.5 8 15849.0 9 15794.0 10 15739.0 11 15135.0 12 14531.0 13 13789.0 14 13047.0 15 12161.0 16 11275.0 17 10562.0 18 9849.0 19 9221.0 20 8593.0 21 8215.0 22 7837.0 23 7590.5 24 7344.0 25 7726.0 26 8791.5 27 9475.0 28 10411.0 29 11347.0 30 12633.0 31 13919.0 32 15400.5 33 16882.0 34 18699.5 35 20517.0 36 22651.0 37 24785.0 38 28046.5 39 31308.0 40 35424.5 41 39541.0 42 42865.5 43 46190.0 44 50499.5 45 54809.0 46 59101.0 47 63393.0 48 62886.5 49 62380.0 50 60605.5 51 58831.0 52 55769.0 53 52707.0 54 52016.0 55 51325.0 56 51229.0 57 51133.0 58 51099.5 59 51066.0 60 47016.0 61 42966.0 62 37723.5 63 32481.0 64 27592.5 65 22704.0 66 19216.5 67 15729.0 68 13390.0 69 11051.0 70 9616.0 71 8181.0 72 6822.5 73 5464.0 74 4271.0 75 2360.0 76 1642.0 77 1195.0 78 748.0 79 569.5 80 391.0 81 278.5 82 166.0 83 121.5 84 77.0 85 54.0 86 31.0 87 23.0 88 15.0 89 12.0 90 9.0 91 6.0 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 981888.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.83385923718591 #Duplication Level Percentage of deduplicated Percentage of total 1 68.64431725027859 32.1487829153228 2 10.972499174556939 10.277689636426766 3 6.443624166520416 9.053393615764397 4 4.179920059906574 7.830471508334168 5 2.9071641753231607 6.8076858883237295 6 1.9819906786918948 5.569456347316247 7 1.3718059763869341 4.497287759918525 8 0.9582701520134561 3.5903591528475958 9 0.6568820165698717 2.7687887909524975 >10 1.8327007268885305 11.867505736813957 >50 0.029358426271844346 0.9676756293146075 >100 0.020590984529437615 1.8654118604717398 >500 4.381060312042241E-4 0.12095476657766487 >1k 0.0 0.0 >5k 2.1905301560211206E-4 0.9331675630113991 >10k+ 2.1905301560211206E-4 1.701368828603897 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16584 1.6889910050840828 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9096 0.9263785686351192 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002953493677486638 0.0 2 0.0 0.0 0.0 0.02505377395385217 0.0 3 0.0 0.0 0.0 0.06497686090470603 0.0 4 0.0 0.0 0.0 0.10836266458088906 0.0 5 0.0 0.0 0.0 0.22792823621431366 0.0 6 0.0 0.0 0.0 0.4159333854777734 0.0 7 0.0 0.0 0.0 0.5450723504106375 0.0 8 0.0 0.0 0.0 0.760473699648025 0.0 9 0.0 0.0 0.0 1.1910727089036632 0.0 10 0.0 0.0 0.0 1.7603840763916048 0.0 11 0.0 0.0 0.0 2.0423918002867945 0.0 12 0.0 0.0 0.0 2.2823377004301917 0.0 13 0.0 0.0 0.0 2.439993156042237 0.0 14 0.0 0.0 0.0 2.526153695737192 0.0 15 0.0 0.0 0.0 2.5896028874983705 0.0 16 0.0 0.0 0.0 2.664967898579064 0.0 17 0.0 2.0368921913700952E-4 0.0 2.734222233085647 0.0 18 0.0 2.0368921913700952E-4 0.0 2.8658054686481553 0.0 19 0.0 2.0368921913700952E-4 0.0 2.9272177682179636 0.0 20 0.0 2.0368921913700952E-4 0.0 3.0002403532785817 0.0 21 0.0 2.0368921913700952E-4 0.0 3.0625692543345067 0.0 22 0.0 2.0368921913700952E-4 0.0 3.139360089949159 0.0 23 0.0 2.0368921913700952E-4 0.0 3.222668980576196 0.0 24 0.0 2.0368921913700952E-4 0.0 3.288867976795724 0.0 25 0.0 2.0368921913700952E-4 0.0 3.3504839655846697 0.0 26 0.0 2.0368921913700952E-4 0.0 3.416581117194629 0.0 27 0.0 2.0368921913700952E-4 0.0 3.4987697171164123 0.0 28 0.0 2.0368921913700952E-4 0.0 3.5744402620258113 0.0 29 0.0 2.0368921913700952E-4 0.0 3.6503144961543477 0.0 30 0.0 2.0368921913700952E-4 0.0 3.748085321340112 0.0 31 0.0 2.0368921913700952E-4 0.0 3.833227414939382 0.0 32 0.0 2.0368921913700952E-4 0.0 3.93079455090601 0.0 33 0.0 2.0368921913700952E-4 0.0 4.025306348585582 0.0 34 0.0 2.0368921913700952E-4 0.0 4.123790086038326 0.0 35 0.0 2.0368921913700952E-4 0.0 4.230523236866119 0.0 36 0.0 2.0368921913700952E-4 0.0 4.335423184721679 0.0 37 0.0 2.0368921913700952E-4 0.0 4.44297109242602 0.0 38 0.0 2.0368921913700952E-4 0.0 4.587692282622865 0.0 39 0.0 2.0368921913700952E-4 0.0 4.762253943423283 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 25 3.8903898E-5 45.0 1 ATATGCG 20 7.0327846E-4 45.0 1 TATTACG 20 7.0327846E-4 45.0 1 ATCGCGA 25 3.8903898E-5 45.0 2 TTAAGCG 30 2.1651776E-6 44.999996 1 CGTTTTT 14575 0.0 43.780445 1 GTTTTTA 9445 0.0 42.99894 2 ATAACGC 105 0.0 42.857143 11 TATGCGA 90 0.0 42.5 2 CGACGGT 115 0.0 41.08696 28 CACGACG 115 0.0 41.08696 26 CGGTCTA 115 0.0 41.08696 31 ACGTTAG 50 1.0804797E-9 40.5 1 TATACGA 50 1.0804797E-9 40.5 2 TATTTTT 10760 0.0 39.500465 7 GGTACGA 40 3.457535E-7 39.375 2 CGTAGGA 40 3.457535E-7 39.375 2 TCACGAC 120 0.0 39.374996 25 GACGGTC 120 0.0 39.374996 29 TTATTTT 10795 0.0 39.351555 6 >>END_MODULE