SRR1546870_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546870_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1498599
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22013	1.4689052908750106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11915	0.7950759342559283	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1653	0.11030302302350395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18245	0.0	43.618797	1
GTTTTTA	12255	0.0	42.63158	2
CGCATCG	80	0.0	42.1875	21
TATACGA	70	0.0	41.785713	2
CGGTCTA	190	0.0	41.44737	31
CACGACG	185	0.0	41.351353	26
TTAACGA	105	0.0	40.714287	2
TCACGAC	190	0.0	40.263157	25
TAATGCG	45	1.9290383E-8	40.0	1
CACGACC	205	0.0	39.512196	27
TTATTTT	14075	0.0	38.669624	6
AGCGATA	205	0.0	38.414635	8
TATTTTT	14145	0.0	38.398727	7
CTCACGA	200	0.0	38.250004	24
AGGGGAA	7770	0.0	38.19498	8
TTTTATT	14280	0.0	38.17752	4
TTTATTT	14385	0.0	37.88321	5
AGACTTA	815	0.0	37.822086	8
GAGCGAT	1195	0.0	37.656906	7
TAAACGG	30	1.1400871E-4	37.500004	2