##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546870_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1498599 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.678532415943156 31.0 31.0 34.0 30.0 34.0 2 32.02305820302829 31.0 31.0 34.0 30.0 34.0 3 31.930032650495562 31.0 31.0 34.0 30.0 34.0 4 35.77116226555603 37.0 35.0 37.0 35.0 37.0 5 35.80531883445805 37.0 35.0 37.0 35.0 37.0 6 35.85415845065958 37.0 35.0 37.0 35.0 37.0 7 36.06589354457063 37.0 35.0 37.0 35.0 37.0 8 13.085411107307559 0.0 0.0 35.0 0.0 37.0 9 24.78324354947521 18.0 17.0 38.0 17.0 39.0 10 32.599835579764836 32.0 32.0 37.0 27.0 39.0 11 35.55444184868667 37.0 35.0 37.0 32.0 39.0 12 36.70553163321209 38.0 35.0 39.0 33.0 39.0 13 36.995540501495064 39.0 37.0 39.0 33.0 39.0 14 38.22418405457364 40.0 37.0 41.0 33.0 41.0 15 38.47142297572599 40.0 38.0 41.0 34.0 41.0 16 38.52300715534977 40.0 38.0 41.0 34.0 41.0 17 38.48554149575704 40.0 38.0 41.0 34.0 41.0 18 38.380008261049156 40.0 38.0 41.0 34.0 41.0 19 38.30213285875674 40.0 37.0 41.0 34.0 41.0 20 38.22891780923383 40.0 37.0 41.0 34.0 41.0 21 38.17202000001335 40.0 37.0 41.0 34.0 41.0 22 38.10766322411799 40.0 36.0 41.0 33.0 41.0 23 37.895745292770115 39.0 36.0 41.0 33.0 41.0 24 37.577468689088946 39.0 35.0 41.0 33.0 41.0 25 37.450183137717296 39.0 35.0 41.0 33.0 41.0 26 37.36655836551339 39.0 35.0 41.0 33.0 41.0 27 37.29828926884377 39.0 35.0 41.0 33.0 41.0 28 37.147034663709235 39.0 35.0 41.0 33.0 41.0 29 37.05479984972631 39.0 35.0 41.0 33.0 41.0 30 36.888809481388954 39.0 35.0 41.0 32.0 41.0 31 36.699063592061655 39.0 35.0 41.0 31.0 41.0 32 36.36851686141523 39.0 35.0 41.0 30.0 41.0 33 35.97609900980849 39.0 35.0 41.0 28.0 41.0 34 35.55561761351769 39.0 35.0 41.0 25.0 41.0 35 35.20401721874898 39.0 35.0 41.0 23.0 41.0 36 35.01086748356298 39.0 35.0 41.0 21.0 41.0 37 34.894445412014825 39.0 35.0 41.0 21.0 41.0 38 34.77641717364018 39.0 34.0 40.0 20.0 41.0 39 34.65190487915713 38.0 34.0 40.0 19.0 41.0 40 34.543417551993564 38.0 34.0 40.0 18.0 41.0 41 34.43980411037242 38.0 34.0 40.0 18.0 41.0 42 34.364657923834194 38.0 34.0 40.0 18.0 41.0 43 34.24788085405102 38.0 34.0 40.0 18.0 41.0 44 34.05880492379883 38.0 33.0 40.0 18.0 41.0 45 33.96892964695692 38.0 33.0 40.0 18.0 41.0 46 33.92958690083204 38.0 33.0 40.0 18.0 41.0 47 33.88678092004599 37.0 33.0 40.0 18.0 41.0 48 33.79522006887767 37.0 33.0 40.0 18.0 41.0 49 33.68044420155091 37.0 33.0 40.0 18.0 41.0 50 33.580614293750365 37.0 33.0 40.0 18.0 41.0 51 33.22525905862742 36.0 33.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 2.0 12 8.0 13 5.0 14 8.0 15 36.0 16 96.0 17 276.0 18 598.0 19 1282.0 20 2571.0 21 4366.0 22 7075.0 23 11328.0 24 17965.0 25 27639.0 26 36085.0 27 38278.0 28 35435.0 29 32800.0 30 34702.0 31 40678.0 32 51081.0 33 68166.0 34 101251.0 35 150553.0 36 160784.0 37 256662.0 38 294712.0 39 124128.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.548198684237743 21.21721688056645 24.57448590316689 23.660098532028915 2 39.24205207663958 22.816043517979125 26.099577004922597 11.842327400458695 3 27.598777257958933 23.07014751778161 37.32679656132161 12.00427866293785 4 24.607983856922367 24.530911871688158 36.65610346730513 14.205000804084348 5 21.92360998505938 28.60171400087682 35.69433851217036 13.780337501893436 6 19.970252215569342 36.376842637690274 33.47873580590939 10.174169340831003 7 76.852513581018 4.459965607877757 16.43715230024843 2.250368510855806 8 28.53318332656034 64.22351809923802 6.028497283129109 1.2148012910725285 9 72.13464042081971 5.826241709756913 18.079552969139844 3.959564900283531 10 39.42475605548916 23.637544132886784 24.05306556323606 12.884634248387993 11 32.46805849997231 22.15195659412558 30.07021891780256 15.309765988099553 12 28.3417378498184 20.449499832843877 34.512968445861766 16.69579387147596 13 22.144216031106385 25.748449051414017 34.9667255883662 17.140609329113392 14 17.74303866477957 28.79743013307763 36.69847637693606 16.76105482520674 15 17.41439838142158 21.779475363322675 43.94437738180794 16.8617488734478 16 19.776004121182517 19.925410333251257 41.78295861668131 18.515626928884913 17 20.022501015948897 19.494607963838227 35.74358450793041 24.73930651228247 18 22.172709310496003 21.593434934895857 36.838073427247714 19.395782327360422 19 25.443564289045966 22.95423925946834 32.85755562361913 18.74464082786656 20 25.971390612165095 23.015429744714897 31.58543412880964 19.427745514310367 21 23.292154872651054 24.18538915346934 34.06955429704677 18.452901676832827 22 21.967317474521202 21.62813401049914 33.99181502189712 22.41273349308254 23 20.6865212108109 24.504153546078705 33.22623330190398 21.58309194120642 24 21.102576473092537 22.9637147762677 36.90513606375021 19.028572686889554 25 21.0844929163839 23.02370413966645 35.685063182345644 20.206739761604002 26 19.022300161684345 25.990141458789175 33.629409868817476 21.358148510709 27 20.13166964611614 24.037250792239952 35.24491875411634 20.586160807527566 28 19.200533298100424 24.22696131520173 37.830466989501524 18.742038397196314 29 20.139476938126876 23.754253139098587 36.78001920460376 19.32625071817077 30 21.038783557175737 23.690927326122598 35.60291979375403 19.667369322947632 31 24.99614640073829 23.164569040817458 31.73217118121659 20.107113377227666 32 25.21455039006432 23.964849836413876 31.8123794290534 19.0082203444684 33 24.549329073354514 24.13587624174312 30.791158942452252 20.523635742450118 34 21.35207617247843 25.870830021907125 32.26353414088759 20.513559664726856 35 21.71628300832978 25.126601579208312 32.30397190976372 20.853143502698188 36 25.576955543143963 25.447968402487923 29.580561577847043 19.39451447652107 37 22.786882948674062 27.60978754156382 29.816181646991623 19.787147862770492 38 22.877033816251043 28.509494534561945 27.52250602062326 21.090965628563747 39 22.24177381674484 26.60197958226317 29.132876773573184 22.023369827418808 40 23.261192620574285 24.869961877727132 29.947304115377094 21.92154138632149 41 20.448498897970705 24.656562562766958 30.492079602348593 24.402858936913745 42 22.428081161137836 27.238574161600265 27.961649513979392 22.371695163282507 43 22.072549094187305 26.185257030066083 29.214753246198615 22.527440629548 44 22.17044052478348 26.91307014084488 29.88844914483461 21.028040189537027 45 20.674309805358206 28.47372779509395 29.277345040267612 21.574617359280236 46 22.741307047448984 27.200872281377475 29.632410004277325 20.425410666896216 47 21.994743090046104 26.72609550653644 30.103783600549576 21.175377802867878 48 22.663234127341603 25.39632016303227 30.496283528815916 21.44416218081021 49 21.89731876239074 24.285349182803408 31.750655111874494 22.066676942931366 50 20.651555219241438 26.63807996668889 30.970326284749955 21.74003852931972 51 20.37569756819536 27.98867475555502 29.738909474782783 21.896718201466836 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1607.0 1 2748.0 2 3889.0 3 30172.5 4 56456.0 5 38459.5 6 20463.0 7 19930.5 8 19398.0 9 19213.0 10 19028.0 11 18605.5 12 18183.0 13 17359.0 14 16535.0 15 15500.5 16 14466.0 17 13587.0 18 12708.0 19 12087.0 20 11466.0 21 11323.0 22 11180.0 23 10925.0 24 10670.0 25 11429.0 26 13705.0 27 15222.0 28 17486.5 29 19751.0 30 21833.0 31 23915.0 32 26272.0 33 28629.0 34 30506.5 35 32384.0 36 36331.5 37 40279.0 38 48717.0 39 57155.0 40 67168.5 41 77182.0 42 82471.5 43 87761.0 44 90008.5 45 92256.0 46 95061.0 47 97866.0 48 100650.5 49 103435.0 50 101324.0 51 99213.0 52 91852.0 53 84491.0 54 79416.0 55 74341.0 56 72146.0 57 69951.0 58 67182.5 59 64414.0 60 59816.0 61 55218.0 62 49550.5 63 43883.0 64 37924.0 65 31965.0 66 27681.0 67 23397.0 68 20346.0 69 17295.0 70 15046.5 71 12798.0 72 10681.5 73 8565.0 74 6505.0 75 3377.0 76 2309.0 77 1765.0 78 1221.0 79 885.5 80 550.0 81 417.5 82 285.0 83 198.5 84 112.0 85 76.0 86 40.0 87 30.0 88 20.0 89 14.0 90 8.0 91 6.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1498599.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.8151908868831 #Duplication Level Percentage of deduplicated Percentage of total 1 71.75861881769283 23.547727742816722 2 6.774083673212508 4.445856976403735 3 3.643871237011915 3.587229906293065 4 2.6009989828635516 3.4140911247702492 5 1.9986114042749594 3.2792407369992143 6 1.6443116595396725 3.237504059119313 7 1.4548363578484855 3.3418512954383077 8 1.2677056077705573 3.328000120589039 9 1.0707151124432412 3.162214872026591 >10 7.687985692965197 42.689615681510546 >50 0.06943992078814505 1.4976365923996542 >100 0.026733019524915618 1.7154321564896613 >500 0.001461959844870573 0.3150553383806282 >1k 2.0885140641008183E-4 0.11328833464067402 >5k 0.0 0.0 >10k+ 4.1770281282016365E-4 2.325255062122679 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22013 1.4689052908750106 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11915 0.7950759342559283 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1653 0.11030302302350395 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6691596617907793E-4 0.0 0.0 0.008874955875454341 0.0 2 2.6691596617907793E-4 0.0 0.0 0.03196318694994458 0.0 3 2.6691596617907793E-4 0.0 0.0 0.06225814911126993 0.0 4 2.6691596617907793E-4 0.0 0.0 0.08955030665308064 0.0 5 2.6691596617907793E-4 0.0 0.0 0.1770987435598182 0.0 6 2.6691596617907793E-4 0.0 0.0 0.3393836509966976 0.0 7 2.6691596617907793E-4 0.0 0.0 0.4427468588995455 0.0 8 2.6691596617907793E-4 0.0 0.0 0.6278530814447361 0.0 9 2.6691596617907793E-4 0.0 0.0 0.9583617765659793 0.0 10 2.6691596617907793E-4 0.0 0.0 1.402509944287965 0.0 11 2.6691596617907793E-4 0.0 0.0 1.6542784293863801 0.0 12 2.6691596617907793E-4 0.0 0.0 1.887963357776163 0.0 13 2.6691596617907793E-4 0.0 0.0 2.0027372232331664 0.0 14 2.6691596617907793E-4 0.0 0.0 2.0631936895727274 0.0 15 2.6691596617907793E-4 0.0 0.0 2.112239498358133 0.0 16 2.6691596617907793E-4 0.0 0.0 2.1810370886407906 0.0 17 2.6691596617907793E-4 0.0 0.0 2.249434304974179 0.0 18 2.6691596617907793E-4 0.0 0.0 2.3773537817655024 0.0 19 2.6691596617907793E-4 0.0 0.0 2.43020314306896 0.0 20 2.6691596617907793E-4 0.0 0.0 2.493328769070312 0.0 21 2.6691596617907793E-4 0.0 0.0 2.5582560778433723 0.0 22 2.6691596617907793E-4 0.0 0.0 2.6279211450161117 0.0 23 2.6691596617907793E-4 0.0 0.0 2.709197056717641 0.0 24 2.6691596617907793E-4 0.0 0.0 2.7785284789326563 0.0 25 2.6691596617907793E-4 0.0 0.0 2.8404529830862026 0.0 26 2.6691596617907793E-4 0.0 0.0 2.901710197324301 0.0 27 2.6691596617907793E-4 0.0 0.0 2.977447602727614 0.0 28 2.6691596617907793E-4 0.0 0.0 3.041574163602138 0.0 29 2.6691596617907793E-4 0.0 0.0 3.1109055858171533 0.0 30 2.6691596617907793E-4 0.0 0.0 3.2268805731219627 0.0 31 2.6691596617907793E-4 0.0 0.0 3.30869031675585 0.0 32 2.6691596617907793E-4 0.0 0.0 3.403045110800154 0.0 33 2.6691596617907793E-4 0.0 0.0 3.492995791402503 0.0 34 2.6691596617907793E-4 0.0 0.0 3.580143854359972 0.0 35 2.6691596617907793E-4 0.0 0.0 3.6753661252943584 0.0 36 2.6691596617907793E-4 0.0 0.0 3.76311474917573 0.0 37 2.6691596617907793E-4 0.0 0.0 3.85586804742296 0.0 38 2.6691596617907793E-4 0.0 0.0 3.957095927596375 0.0 39 2.6691596617907793E-4 0.0 0.0 4.083814282539892 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 18245 0.0 43.618797 1 GTTTTTA 12255 0.0 42.63158 2 CGCATCG 80 0.0 42.1875 21 TATACGA 70 0.0 41.785713 2 CGGTCTA 190 0.0 41.44737 31 CACGACG 185 0.0 41.351353 26 TTAACGA 105 0.0 40.714287 2 TCACGAC 190 0.0 40.263157 25 TAATGCG 45 1.9290383E-8 40.0 1 CACGACC 205 0.0 39.512196 27 TTATTTT 14075 0.0 38.669624 6 AGCGATA 205 0.0 38.414635 8 TATTTTT 14145 0.0 38.398727 7 CTCACGA 200 0.0 38.250004 24 AGGGGAA 7770 0.0 38.19498 8 TTTTATT 14280 0.0 38.17752 4 TTTATTT 14385 0.0 37.88321 5 AGACTTA 815 0.0 37.822086 8 GAGCGAT 1195 0.0 37.656906 7 TAAACGG 30 1.1400871E-4 37.500004 2 >>END_MODULE