##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546869_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 653861 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.674082106135707 31.0 31.0 34.0 30.0 34.0 2 32.02290395053383 31.0 31.0 34.0 30.0 34.0 3 31.91313750170143 31.0 31.0 34.0 30.0 34.0 4 35.752929139373656 37.0 35.0 37.0 35.0 37.0 5 35.78447712893107 37.0 35.0 37.0 35.0 37.0 6 35.83671758982414 37.0 35.0 37.0 35.0 37.0 7 36.07456018939805 37.0 35.0 37.0 35.0 37.0 8 13.224056794945716 0.0 0.0 35.0 0.0 37.0 9 24.895379904903336 18.0 17.0 39.0 17.0 39.0 10 32.623514783723145 32.0 32.0 37.0 27.0 39.0 11 35.535525134546944 37.0 35.0 37.0 32.0 39.0 12 36.68276896771638 38.0 35.0 39.0 33.0 39.0 13 36.97079807482018 39.0 37.0 39.0 33.0 39.0 14 38.17639528890697 40.0 37.0 41.0 33.0 41.0 15 38.41882601959744 40.0 38.0 41.0 34.0 41.0 16 38.477665742413144 40.0 38.0 41.0 34.0 41.0 17 38.417992509111265 40.0 38.0 41.0 34.0 41.0 18 38.31210608982643 40.0 37.0 41.0 34.0 41.0 19 38.238512466716934 40.0 37.0 41.0 34.0 41.0 20 38.159243325416256 40.0 37.0 41.0 34.0 41.0 21 38.10057948096002 40.0 36.0 41.0 33.0 41.0 22 38.05055661677329 40.0 36.0 41.0 33.0 41.0 23 37.85637773165856 39.0 36.0 41.0 33.0 41.0 24 37.54335248623178 39.0 35.0 41.0 33.0 41.0 25 37.429747301031874 39.0 35.0 41.0 33.0 41.0 26 37.357903285254814 39.0 35.0 41.0 33.0 41.0 27 37.313799110208436 39.0 35.0 41.0 33.0 41.0 28 37.16319829443873 39.0 35.0 41.0 33.0 41.0 29 37.07714942472483 39.0 35.0 41.0 33.0 41.0 30 36.88296595147899 39.0 35.0 41.0 32.0 41.0 31 36.710403281431375 39.0 35.0 41.0 31.0 41.0 32 36.371063574674125 39.0 35.0 41.0 30.0 41.0 33 35.99729606139531 39.0 35.0 41.0 29.0 41.0 34 35.560837853916965 39.0 35.0 41.0 25.0 41.0 35 35.24692556980765 39.0 35.0 41.0 23.0 41.0 36 35.07567816401345 39.0 35.0 41.0 22.0 41.0 37 35.01890768833131 39.0 35.0 41.0 22.0 41.0 38 34.890695423033335 39.0 35.0 40.0 21.0 41.0 39 34.78093815046317 38.0 34.0 40.0 21.0 41.0 40 34.661680387727664 38.0 34.0 40.0 20.0 41.0 41 34.54547679093875 38.0 34.0 40.0 18.0 41.0 42 34.45666739566972 38.0 34.0 40.0 18.0 41.0 43 34.34013804157153 38.0 34.0 40.0 18.0 41.0 44 34.09886046116835 38.0 34.0 40.0 18.0 41.0 45 34.04015226477799 38.0 33.0 40.0 18.0 41.0 46 34.0167344435591 38.0 33.0 40.0 18.0 41.0 47 33.96750226730146 38.0 33.0 40.0 18.0 41.0 48 33.876871383979164 37.0 33.0 40.0 18.0 41.0 49 33.784848767551516 37.0 33.0 40.0 18.0 41.0 50 33.67976832996615 37.0 33.0 40.0 18.0 41.0 51 33.33731022342669 36.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 6.0 15 12.0 16 40.0 17 101.0 18 231.0 19 494.0 20 1021.0 21 1739.0 22 2859.0 23 4636.0 24 7690.0 25 11986.0 26 15846.0 27 16587.0 28 15182.0 29 14265.0 30 15341.0 31 18011.0 32 22860.0 33 30821.0 34 44592.0 35 65562.0 36 69066.0 37 109508.0 38 129229.0 39 56160.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.96890776480016 20.853514737841834 25.29819028814993 23.879387209208073 2 39.642064597827364 22.513041762698798 26.305590943640926 11.539302695832907 3 26.48376336866704 22.97338425139288 38.516748972640976 12.026103407299104 4 23.85874061918359 25.213768675605365 37.55966482172817 13.367825883482881 5 21.04591036932926 29.053422669344098 36.58606339879577 13.314603562530875 6 19.47585190124507 36.831834288939085 34.04072119303644 9.651592616779407 7 78.08937985290451 3.614223818212128 16.38712203358206 1.9092742953012949 8 29.45687233219293 63.59700303275467 5.880760589788961 1.065364045263443 9 74.0590125424211 4.50997994986702 17.909616875757997 3.5213906319538864 10 39.118252962020975 24.271672419673294 23.69999128255088 12.910083335754846 11 32.25960869359084 21.207565522335788 31.004296020102135 15.52852976397124 12 28.848486146138093 19.38378340350625 34.73674068341742 17.030989766938234 13 23.52151298211699 22.9198560550331 36.106909572523826 17.451721390326078 14 18.19209281483373 26.245180550606324 37.63659248678236 17.926134147777585 15 17.786960837242166 21.43116044541577 43.804417146763605 16.977461570578456 16 21.677543086374627 19.669012221251915 41.21594650850869 17.437498183864765 17 21.040557549693283 20.282292413831073 36.079227848120624 22.597922188355017 18 22.43443178290187 21.823598593584876 37.05328808416468 18.68868153934858 19 24.97472704443299 23.879081333800304 32.993709672239206 18.1524819495275 20 25.4696334542051 23.96487938567983 32.26587913945013 18.29960802066494 21 23.499489952757543 23.942703418616496 35.02074599953201 17.53706062909395 22 21.548004851183965 21.49921772364463 35.72624762755387 21.226529797617534 23 21.23172967954963 23.41017433368866 34.81198603372888 20.546109953032833 24 22.02884099219865 22.197990092695544 36.709484125831025 19.063684789274784 25 22.02501754960152 22.56152301483037 34.99964059639587 20.41381883917224 26 18.89178281010796 25.243132714751297 33.96991103613765 21.89517343900309 27 19.235739706145498 23.423938727038315 35.98945341594009 21.350868150876103 28 18.725386588280994 24.014890014850252 37.43058539964916 19.829137997219593 29 20.52745155315885 23.754131229726198 36.23247142741347 19.485945789701482 30 21.451195284624713 23.107357679996205 36.12296803143175 19.318479003947324 31 24.54267803095765 22.40369130442097 32.617482920681915 20.43614774393946 32 25.717698409906692 23.52885399190348 31.846676893101133 18.906770705088697 33 24.029419096719334 23.239801731560682 31.85570021763035 20.87507895408963 34 20.922642579997888 24.834483169970376 33.59643716325029 20.64643708678144 35 20.978923655027597 24.85145925510162 33.435852574170966 20.73376451569982 36 23.41858590740234 26.16825288555213 30.53768308554876 19.87547812149677 37 22.333187022929952 27.325226615442734 30.588305465534727 19.753280896092594 38 21.928666796153923 28.050151331857993 29.06917525284426 20.952006619143823 39 21.858621327774557 26.152347364348078 29.726348566438432 22.26268274143893 40 22.545158680514664 24.094876433982147 30.964379279388126 22.395585606115063 41 20.262410512326014 24.423539559631173 31.106305468593476 24.20774445944933 42 21.53209932997992 26.783521268281792 28.98597714193078 22.698402259807512 43 21.26124665639945 25.51918527026386 29.731242572962756 23.488325500373932 44 21.551216542965555 25.934717011719616 30.30812359201726 22.205942853297568 45 20.85427942636126 27.05758563364385 29.715795864870366 22.37233907512453 46 22.374633140682807 26.879413208617738 29.700196219074083 21.045757431625375 47 21.22423573205926 26.152806177459738 30.546247596966325 22.076710493514675 48 21.20282445351535 24.69928623973597 31.862429476601296 22.235459830147384 49 21.873303347347527 23.7223201873181 31.7250914185125 22.679285046821878 50 20.405254327754676 25.10548878125473 32.210056877532075 22.279200013458517 51 19.75022214201489 26.537750378138476 31.55166006230682 22.160367417539813 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 531.0 1 1050.0 2 1569.0 3 14592.0 4 27615.0 5 18209.0 6 8803.0 7 8507.5 8 8212.0 9 8129.5 10 8047.0 11 7872.5 12 7698.0 13 7339.0 14 6980.0 15 6478.0 16 5976.0 17 5514.0 18 5052.0 19 4731.0 20 4410.0 21 4294.5 22 4179.0 23 4370.0 24 4561.0 25 4952.0 26 5923.5 27 6504.0 28 7326.5 29 8149.0 30 8949.0 31 9749.0 32 10697.0 33 11645.0 34 12887.5 35 14130.0 36 16119.0 37 18108.0 38 21165.0 39 24222.0 40 28093.0 41 31964.0 42 34939.0 43 37914.0 44 40248.5 45 42583.0 46 45242.0 47 47901.0 48 46956.5 49 46012.0 50 43323.5 51 40635.0 52 38416.5 53 36198.0 54 34669.5 55 33141.0 56 32466.5 57 31792.0 58 30829.5 59 29867.0 60 27597.0 61 25327.0 62 22515.5 63 19704.0 64 16740.0 65 13776.0 66 11465.5 67 9155.0 68 7801.0 69 6447.0 70 5381.5 71 4316.0 72 3504.5 73 2693.0 74 2074.5 75 1102.5 76 749.0 77 553.5 78 358.0 79 284.0 80 210.0 81 158.0 82 106.0 83 71.5 84 37.0 85 27.0 86 17.0 87 12.0 88 7.0 89 7.5 90 8.0 91 5.5 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 653861.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.149047174420296 #Duplication Level Percentage of deduplicated Percentage of total 1 68.33805250948627 32.220740615777785 2 11.160762793405437 10.524386628975755 3 6.39296682100863 9.042668826847192 4 4.238424284656976 7.993506661700015 5 2.8881166640967457 6.8085974420363415 6 1.990958041117983 5.632306476177791 7 1.3692872887972618 4.519241368238531 8 1.0217011117768655 3.853778713386008 9 0.7132187768030654 3.0264827177853064 >10 1.846233778109865 11.600456785494291 >50 0.024036838423491195 0.774635312476202 >100 0.01559144862465482 1.3348589349198652 >500 0.0 0.0 >1k 0.0 0.0 >5k 3.2482184634597864E-4 0.9510640185678934 >10k+ 3.2482184634597864E-4 1.717275497617035 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11213 1.7148904736633628 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6210 0.949743141126325 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010552701568070278 0.0 2 0.0 0.0 0.0 0.035175671893567594 0.0 3 0.0 0.0 0.0 0.07325716016095164 0.0 4 0.0 0.0 0.0 0.11562090413711783 0.0 5 0.0 0.0 0.0 0.24102982132288056 0.0 6 0.0 0.0 0.0 0.47395394433985205 0.0 7 0.0 0.0 0.0 0.6330091563803316 0.0 8 0.0 0.0 0.0 0.8882621841645243 0.0 9 0.0 0.0 0.0 1.3487576105624897 0.0 10 0.0 0.0 0.0 1.9554614818745881 0.0 11 0.0 0.0 0.0 2.27877178788764 0.0 12 0.0 0.0 0.0 2.5682828613420896 0.0 13 0.0 0.0 0.0 2.724585194712638 0.0 14 0.0 0.0 0.0 2.823382951422397 0.0 15 0.0 0.0 0.0 2.8961812984716935 0.0 16 0.0 0.0 0.0 2.981826412647336 0.0 17 0.0 0.0 0.0 3.0760360382405434 0.0 18 0.0 0.0 0.0 3.243502823994702 0.0 19 0.0 0.0 0.0 3.3254774332771033 0.0 20 0.0 0.0 0.0 3.413416613011022 0.0 21 0.0 0.0 0.0 3.511449681201356 0.0 22 0.0 0.0 0.0 3.6260000214112784 0.0 23 0.0 0.0 0.0 3.7518677517086965 0.0 24 0.0 0.0 0.0 3.8583123936127097 0.0 25 0.0 0.0 0.0 3.9462515733466286 0.0 26 0.0 0.0 0.0 4.026085054774638 0.0 27 0.0 0.0 0.0 4.11891824103288 0.0 28 0.0 0.0 0.0 4.208539735509535 0.0 29 0.0 0.0 0.0 4.310396246296996 0.0 30 0.0 0.0 0.0 4.450028369944071 0.0 31 1.529377038850765E-4 0.0 0.0 4.557849451183049 0.0 32 1.529377038850765E-4 0.0 0.0 4.677905548732834 0.0 33 1.529377038850765E-4 0.0 0.0 4.80010277413701 0.0 34 1.529377038850765E-4 0.0 0.0 4.9149589897547035 0.0 35 1.529377038850765E-4 0.0 0.0 5.044497224945363 0.0 36 1.529377038850765E-4 0.0 0.0 5.156753499597009 0.0 37 1.529377038850765E-4 0.0 0.0 5.289503426569255 0.0 38 1.529377038850765E-4 0.0 0.0 5.443817569789298 0.0 39 1.529377038850765E-4 0.0 0.0 5.659612669971141 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTCG 20 7.0310524E-4 45.0 10 TACGGGT 30 2.1640608E-6 44.999996 4 CGTTTTT 7960 0.0 43.897614 1 GTTTTTA 5380 0.0 42.532528 2 TTGTGCG 60 3.6379788E-12 41.249996 1 CGGTCTA 175 0.0 41.142857 31 ACGGTCT 175 0.0 41.142857 30 GAGCGAT 510 0.0 40.14706 7 TAACGCC 45 1.9261279E-8 40.0 12 TTATTTT 5950 0.0 39.81933 6 TATTTTT 5960 0.0 39.714767 7 GCGCGAC 315 0.0 39.285713 9 TTTTATT 6075 0.0 39.185184 4 CGACGGT 190 0.0 39.078945 28 CGTTGAG 75 0.0 39.0 3 TTTATTT 6075 0.0 39.0 5 GTACGGG 100 0.0 38.25 3 CTATCTC 330 0.0 38.181816 6 GACGGTC 195 0.0 38.076923 29 CGTAGGA 65 9.094947E-12 38.07692 2 >>END_MODULE