SRR1546863_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546863_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2113138
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9355	0.4427065340739696	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4705	0.22265464915211405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCAGCG	55	1.8189894E-12	45.000004	1
CGTACCA	35	1.2125747E-7	45.000004	32
CGGTCGA	35	1.2125747E-7	45.000004	44
CTATGCG	50	2.1827873E-11	45.0	1
GGTCGAC	25	3.89192E-5	45.0	9
ACACCGT	20	7.0346333E-4	45.0	45
CCGTCGA	25	3.89192E-5	45.0	45
TACGCTA	40	6.8193913E-9	45.0	42
GTTCGAC	25	3.89192E-5	45.0	39
CGTCGGT	20	7.0346333E-4	45.0	36
CGCACGA	25	3.89192E-5	45.0	39
ATCGGAT	20	7.0346333E-4	45.0	36
CGACTAT	25	3.89192E-5	45.0	42
TATCGGC	20	7.0346333E-4	45.0	38
ACGCGCC	25	3.89192E-5	45.0	18
ATCTCGC	30	2.166371E-6	44.999996	10
CCGTAGA	30	2.166371E-6	44.999996	24
TCGCTAG	30	2.166371E-6	44.999996	1
TACCGGT	60	0.0	44.999996	40
CGGTCTA	230	0.0	44.02174	31