SRR1546862_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546862_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1693845
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9364	0.5528250813976485	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2700	0.15940065354267952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGATC	75	0.0	45.000004	24
GCCCATA	20	7.034235E-4	45.0	31
CGTTAGT	20	7.034235E-4	45.0	14
CTAACGA	25	3.8915914E-5	45.0	23
CCCGTAC	20	7.034235E-4	45.0	21
GCGATCG	40	6.8175723E-9	45.0	9
TATACGA	20	7.034235E-4	45.0	34
CGATCGT	20	7.034235E-4	45.0	10
TAATGCG	50	2.1827873E-11	45.0	1
CGTTTTT	5720	0.0	42.679195	1
TCCGAAC	60	3.6379788E-12	41.249996	36
GTATCGA	45	1.9292202E-8	40.0	17
GTTACGA	85	0.0	39.705883	22
CAATTCG	40	3.4595178E-7	39.375	35
CACGACG	370	0.0	38.91892	26
CGACGGT	365	0.0	38.835617	28
TACGGGA	435	0.0	38.793102	4
TAGTAGG	795	0.0	38.490566	2
CGGTCTA	380	0.0	38.486843	31
TAGCCGT	100	0.0	38.25	44