##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546862_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1693845 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.941360041798394 33.0 31.0 34.0 30.0 34.0 2 32.32810144966039 33.0 31.0 34.0 31.0 34.0 3 32.39973197075293 34.0 31.0 34.0 30.0 34.0 4 36.00989523834826 37.0 35.0 37.0 35.0 37.0 5 35.96673131248727 37.0 35.0 37.0 35.0 37.0 6 36.02413857230148 37.0 35.0 37.0 35.0 37.0 7 36.231179358205736 37.0 35.0 37.0 35.0 37.0 8 36.0982032004109 37.0 35.0 37.0 35.0 37.0 9 37.91559085984845 39.0 39.0 39.0 35.0 39.0 10 37.651970516782825 39.0 37.0 39.0 35.0 39.0 11 37.406992375335406 39.0 37.0 39.0 35.0 39.0 12 36.717380279777664 39.0 35.0 39.0 33.0 39.0 13 36.52359808601141 39.0 35.0 39.0 33.0 39.0 14 37.6057732555222 40.0 35.0 41.0 33.0 41.0 15 37.764081129028924 40.0 35.0 41.0 33.0 41.0 16 37.8628115323421 40.0 35.0 41.0 34.0 41.0 17 37.8008371486175 40.0 35.0 41.0 34.0 41.0 18 37.718392769114054 39.0 35.0 41.0 33.0 41.0 19 37.67705840853207 39.0 36.0 41.0 34.0 41.0 20 37.54321322198903 39.0 35.0 41.0 34.0 41.0 21 37.420254509710155 39.0 35.0 41.0 33.0 41.0 22 37.37857537141828 39.0 35.0 41.0 33.0 41.0 23 37.30830684035434 39.0 35.0 41.0 33.0 41.0 24 37.287428306604205 39.0 35.0 41.0 33.0 41.0 25 37.16604116669471 39.0 35.0 41.0 33.0 41.0 26 37.12219063727791 39.0 35.0 41.0 33.0 41.0 27 37.04516824148609 39.0 35.0 41.0 33.0 41.0 28 36.99145966720686 39.0 35.0 41.0 33.0 41.0 29 36.906596530379105 38.0 35.0 41.0 32.0 41.0 30 36.85984254757667 38.0 35.0 41.0 32.0 41.0 31 36.692917592813984 38.0 35.0 41.0 32.0 41.0 32 36.54273561040119 38.0 35.0 41.0 31.0 41.0 33 36.4469901319188 38.0 35.0 41.0 31.0 41.0 34 36.29328716618109 38.0 35.0 41.0 31.0 41.0 35 36.17595175473553 38.0 35.0 41.0 31.0 41.0 36 36.07676558362778 38.0 35.0 41.0 30.0 41.0 37 35.796566982220924 38.0 35.0 41.0 30.0 41.0 38 35.889088434892216 38.0 35.0 41.0 30.0 41.0 39 35.78529381377871 38.0 35.0 41.0 30.0 41.0 40 35.64687796108853 38.0 35.0 40.0 29.0 41.0 41 35.57741824074812 37.0 35.0 40.0 29.0 41.0 42 35.578286088750744 37.0 35.0 40.0 29.0 41.0 43 35.453927012211864 37.0 35.0 40.0 29.0 41.0 44 35.30503322322881 37.0 35.0 40.0 29.0 41.0 45 35.24801029610148 36.0 35.0 40.0 29.0 41.0 46 35.09391650357618 36.0 34.0 40.0 28.0 41.0 47 35.07782412204186 36.0 34.0 40.0 28.0 41.0 48 34.94001517258073 36.0 34.0 40.0 28.0 41.0 49 34.88584138454227 36.0 34.0 40.0 28.0 41.0 50 34.765645026552015 35.0 34.0 40.0 27.0 41.0 51 34.22136027794751 35.0 34.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 7.0 13 12.0 14 22.0 15 42.0 16 105.0 17 228.0 18 526.0 19 1141.0 20 1878.0 21 3109.0 22 4691.0 23 6913.0 24 10032.0 25 14467.0 26 19835.0 27 23943.0 28 25248.0 29 27170.0 30 30556.0 31 37161.0 32 46548.0 33 62243.0 34 125607.0 35 262104.0 36 110261.0 37 148180.0 38 234168.0 39 497451.0 40 192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.598652769291164 23.503685402147187 26.518305984313795 14.37935584424785 2 32.337256360528855 25.28802812535976 28.55981509524189 13.814900418869493 3 29.547567811694698 25.265416847468337 30.67051589726333 14.516499443573643 4 26.488610232931585 26.652320607847823 30.21551558731761 16.643553571902977 5 23.777146078891516 31.407773438537767 29.059447588179555 15.755632894391164 6 21.808725119476694 40.409836791441954 26.773287992702993 11.008150096378358 7 85.49034888080078 4.869630928449769 7.2387379010476165 2.4012822897018324 8 86.10964993845364 4.127709442127231 7.093329082649238 2.6693115367698934 9 81.4434024364685 5.571584176828458 9.064642868739465 3.920370517963568 10 49.770374502979905 23.65582447036181 14.293456603172071 12.28034442348621 11 42.376545669763175 21.460464210125487 20.79121761436259 15.371772505748755 12 37.168572094849296 20.87629033353111 25.868305541534202 16.086832030085397 13 24.485239204295553 32.19916816473762 25.912406389014343 17.403186241952483 14 18.854263524702674 35.31928836463785 28.522975833089802 17.30347227756967 15 17.37898095752563 22.984511569830772 41.94397952587161 17.69252794677199 16 20.537534426113368 19.290726129014164 40.13023623767228 20.041503207200186 17 21.186413160590252 19.461048679188472 28.115028234578727 31.23750992564255 18 24.8793720794996 22.5309871918623 30.950411637428456 21.639229091209643 19 29.304924594635285 24.33640622370996 25.110916288090113 21.24775289356464 20 30.293267683878984 23.455097721456212 24.4207704955294 21.8308640991354 21 26.29797885875036 25.369676682341062 27.33467347956867 20.997670979339905 22 24.560039436902432 22.9434806608633 26.85470040056794 25.641779501666328 23 22.491786438546622 27.103365420094516 25.75908657521792 24.64576156614094 24 23.379293855104805 23.90000265667756 32.631616234071004 20.08908725414663 25 21.639583314884185 24.116020060867434 31.176406341784517 23.067990282463864 26 20.26991843999894 29.0422677399644 26.91916910933409 23.768644710702574 27 21.19786639273369 27.944351460729877 28.67151362727995 22.186268519256487 28 19.215984933686375 26.04258358940753 34.70589103489398 20.03554044201211 29 20.365086533891827 24.537841419964636 33.26685735707813 21.83021468906541 30 22.300564691574497 25.92557170225139 31.14157434712149 20.632289259052627 31 29.552172719463705 23.726787279827846 24.94974451617474 21.77129548453371 32 28.82878893877539 25.572115512340265 25.65500385218246 19.944091696701882 33 26.92271134607948 25.928877789880424 25.00760104968282 22.140809814357276 34 21.96635465464668 26.47148942199552 28.209487881122534 23.35266804223527 35 22.47519696312236 26.20210231750839 28.36009198008082 22.962608739288424 36 28.649728871295782 25.006243192263756 25.572528773293897 20.77149916314657 37 22.835914738361538 29.27239505385676 26.622506781907436 21.269183425874267 38 22.8052153532348 30.77991197541688 22.981795854992633 23.433076816355687 39 22.86029713462566 28.217398876520576 25.346238882542384 23.57606510631138 40 24.254226331216845 25.025489345247053 26.165912465426295 24.554371858109803 41 20.66517302350569 24.37224185211752 26.934932062851086 28.027653061525697 42 23.931056265478837 26.16284252691362 24.140874755364276 25.76522645224327 43 23.683867177929503 25.57996747045922 25.39559404786152 25.340571303749755 44 21.882698830176313 27.931953632121004 27.153488070041824 23.031859467660855 45 21.175727413074984 30.894444296851248 24.37165147932662 23.55817681074715 46 23.792849995129426 28.36564148431527 26.636321505214468 21.205187015340837 47 23.596373930318297 26.178605480430615 27.114700577679773 23.110320011571307 48 24.214494242389357 24.369289988163025 28.413402643098983 23.002813126348634 49 23.131632469322756 23.597259489504648 29.006136925161393 24.264971116011207 50 21.36204906588265 28.403130156537344 27.471994190731735 22.762826586848263 51 21.251413204868214 29.85196402268212 25.337560402516168 23.559062369933496 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1329.0 1 2192.5 2 3056.0 3 9650.0 4 16244.0 5 11189.0 6 6134.0 7 6421.5 8 6709.0 9 7013.0 10 7317.0 11 7267.0 12 7217.0 13 6969.0 14 6721.0 15 6352.5 16 5984.0 17 5671.5 18 5359.0 19 4968.0 20 4577.0 21 4500.5 22 4424.0 23 5474.5 24 6525.0 25 7544.5 26 9730.0 27 10896.0 28 11837.0 29 12778.0 30 15774.0 31 18770.0 32 21760.0 33 24750.0 34 27231.0 35 29712.0 36 34026.5 37 38341.0 38 47468.0 39 56595.0 40 72598.5 41 88602.0 42 108356.5 43 128111.0 44 133134.5 45 138158.0 46 136919.0 47 135680.0 48 132760.5 49 129841.0 50 124406.5 51 118972.0 52 114578.0 53 110184.0 54 105092.5 55 100001.0 56 94834.5 57 89668.0 58 87566.5 59 85465.0 60 80961.0 61 76457.0 62 68404.0 63 60351.0 64 54284.0 65 48217.0 66 40973.0 67 33729.0 68 29084.0 69 24439.0 70 20734.5 71 17030.0 72 14817.0 73 12604.0 74 9795.5 75 5408.0 76 3829.0 77 2896.5 78 1964.0 79 1445.0 80 926.0 81 658.5 82 391.0 83 245.5 84 100.0 85 85.5 86 71.0 87 50.5 88 30.0 89 22.0 90 14.0 91 15.0 92 16.0 93 9.5 94 3.0 95 2.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1693845.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.913075853338224 #Duplication Level Percentage of deduplicated Percentage of total 1 80.94588531434316 16.92827439594475 2 6.021483523690504 2.5185548336113173 3 2.031182497580563 1.2743482093162588 4 1.056828215823723 0.8840611456587849 5 0.7104314851644781 0.7428653768922231 6 0.5211661107977504 0.6539511844381576 7 0.4098567222341886 0.5999955304758914 8 0.34596986898882576 0.5788235290506242 9 0.31027680618450376 0.5839958144941246 >10 4.84079067714183 26.387448438194376 >50 2.3027447086786426 33.950880281823935 >100 0.49765728815075394 13.308243472080322 >500 0.00400874685481982 0.5692411916808932 >1k 0.0014316953052927928 0.4585786919726783 >5k 2.863390610585586E-4 0.5607379043656515 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9364 0.5528250813976485 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2700 0.15940065354267952 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.90372790898813E-5 0.0 0.0 0.018242519238773323 0.0 2 5.90372790898813E-5 0.0 0.0 0.07060858579149804 0.0 3 5.90372790898813E-5 0.0 0.0 0.10886474264174113 0.0 4 5.90372790898813E-5 0.0 0.0 0.16908276731342006 0.0 5 5.90372790898813E-5 0.0 0.0 0.31348795196726975 0.0 6 1.180745581797626E-4 0.0 0.0 0.511853209709271 0.0 7 1.180745581797626E-4 0.0 0.0 0.6630476814584569 0.0 8 1.180745581797626E-4 0.0 0.0 1.1050007527253083 0.0 9 1.180745581797626E-4 0.0 0.0 1.3373714832230812 0.0 10 1.180745581797626E-4 0.0 0.0 1.7032255017430757 0.0 11 1.180745581797626E-4 5.90372790898813E-5 0.0 1.9538387514796218 0.0 12 1.180745581797626E-4 5.90372790898813E-5 0.0 2.175582771741216 0.0 13 1.180745581797626E-4 5.90372790898813E-5 0.0 2.284978849894766 0.0 14 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.3206373664650544 0.0 15 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.3753649241813743 0.0 16 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.476613857820521 0.0 17 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.5834713329732057 0.0 18 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.7488937889830534 0.0 19 1.7711183726964392E-4 5.90372790898813E-5 0.0 2.82528802812536 0.0 20 2.361491163595252E-4 5.90372790898813E-5 0.0 2.915260841458339 0.0 21 2.361491163595252E-4 5.90372790898813E-5 0.0 3.0194616390519795 0.0 22 2.361491163595252E-4 5.90372790898813E-5 0.0 3.141668806768034 0.0 23 2.361491163595252E-4 5.90372790898813E-5 0.0 3.2720821562775817 0.0 24 2.361491163595252E-4 5.90372790898813E-5 0.0 3.3681358093568186 0.0 25 2.361491163595252E-4 5.90372790898813E-5 0.0 3.448308434360877 0.0 26 2.361491163595252E-4 5.90372790898813E-5 0.0 3.5293666185512844 0.0 27 2.361491163595252E-4 5.90372790898813E-5 0.0 3.6148525986734326 0.0 28 2.361491163595252E-4 5.90372790898813E-5 0.0 3.7073640150072764 0.0 29 2.361491163595252E-4 5.90372790898813E-5 0.0 3.8118009617172763 0.0 30 2.361491163595252E-4 5.90372790898813E-5 0.0 3.9412106774822964 0.0 31 2.361491163595252E-4 5.90372790898813E-5 0.0 4.05834063919662 0.0 32 2.361491163595252E-4 5.90372790898813E-5 0.0 4.171219916816474 0.0 33 2.361491163595252E-4 5.90372790898813E-5 0.0 4.285043790901765 0.0 34 2.951863954494065E-4 5.90372790898813E-5 0.0 4.400343596964303 0.0 35 2.951863954494065E-4 5.90372790898813E-5 0.0 4.542800551408186 0.0 36 2.951863954494065E-4 5.90372790898813E-5 0.0 4.654794269841692 0.0 37 2.951863954494065E-4 5.90372790898813E-5 0.0 4.778772555930442 0.0 38 2.951863954494065E-4 5.90372790898813E-5 0.0 4.924063299770641 0.0 39 2.951863954494065E-4 5.90372790898813E-5 0.0 5.119063432604518 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGATC 75 0.0 45.000004 24 GCCCATA 20 7.034235E-4 45.0 31 CGTTAGT 20 7.034235E-4 45.0 14 CTAACGA 25 3.8915914E-5 45.0 23 CCCGTAC 20 7.034235E-4 45.0 21 GCGATCG 40 6.8175723E-9 45.0 9 TATACGA 20 7.034235E-4 45.0 34 CGATCGT 20 7.034235E-4 45.0 10 TAATGCG 50 2.1827873E-11 45.0 1 CGTTTTT 5720 0.0 42.679195 1 TCCGAAC 60 3.6379788E-12 41.249996 36 GTATCGA 45 1.9292202E-8 40.0 17 GTTACGA 85 0.0 39.705883 22 CAATTCG 40 3.4595178E-7 39.375 35 CACGACG 370 0.0 38.91892 26 CGACGGT 365 0.0 38.835617 28 TACGGGA 435 0.0 38.793102 4 TAGTAGG 795 0.0 38.490566 2 CGGTCTA 380 0.0 38.486843 31 TAGCCGT 100 0.0 38.25 44 >>END_MODULE