SRR1546860_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546860_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2812760
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10851	0.38577767033092053	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10813	0.38442668411097997	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3271	0.11629147172172527	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGA	20	7.035029E-4	45.000004	14
CGAACCG	40	6.8212103E-9	45.000004	25
CGTATTA	20	7.035029E-4	45.000004	43
GCACGGC	20	7.035029E-4	45.000004	38
CATCTCG	40	6.8212103E-9	45.000004	14
GCGTTCC	20	7.035029E-4	45.000004	20
CGCTCGA	20	7.035029E-4	45.000004	22
TGTTACG	160	0.0	45.000004	1
CGTAAGC	40	6.8212103E-9	45.000004	32
CATCGCA	20	7.035029E-4	45.000004	36
CACCGTA	20	7.035029E-4	45.000004	24
TCGGTCA	40	6.8212103E-9	45.000004	43
GTAACGT	20	7.035029E-4	45.000004	10
GCGTAGT	20	7.035029E-4	45.000004	44
TACGTCG	40	6.8212103E-9	45.000004	2
TGCGTAG	210	0.0	45.000004	1
TCGCCCG	25	3.892251E-5	45.0	45
CGAACTA	70	0.0	45.0	33
TCGCACC	25	3.892251E-5	45.0	26
ACGTTAC	25	3.892251E-5	45.0	42