Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546860_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2812760 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 10851 | 0.38577767033092053 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10813 | 0.38442668411097997 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3271 | 0.11629147172172527 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGA | 20 | 7.035029E-4 | 45.000004 | 14 |
CGAACCG | 40 | 6.8212103E-9 | 45.000004 | 25 |
CGTATTA | 20 | 7.035029E-4 | 45.000004 | 43 |
GCACGGC | 20 | 7.035029E-4 | 45.000004 | 38 |
CATCTCG | 40 | 6.8212103E-9 | 45.000004 | 14 |
GCGTTCC | 20 | 7.035029E-4 | 45.000004 | 20 |
CGCTCGA | 20 | 7.035029E-4 | 45.000004 | 22 |
TGTTACG | 160 | 0.0 | 45.000004 | 1 |
CGTAAGC | 40 | 6.8212103E-9 | 45.000004 | 32 |
CATCGCA | 20 | 7.035029E-4 | 45.000004 | 36 |
CACCGTA | 20 | 7.035029E-4 | 45.000004 | 24 |
TCGGTCA | 40 | 6.8212103E-9 | 45.000004 | 43 |
GTAACGT | 20 | 7.035029E-4 | 45.000004 | 10 |
GCGTAGT | 20 | 7.035029E-4 | 45.000004 | 44 |
TACGTCG | 40 | 6.8212103E-9 | 45.000004 | 2 |
TGCGTAG | 210 | 0.0 | 45.000004 | 1 |
TCGCCCG | 25 | 3.892251E-5 | 45.0 | 45 |
CGAACTA | 70 | 0.0 | 45.0 | 33 |
TCGCACC | 25 | 3.892251E-5 | 45.0 | 26 |
ACGTTAC | 25 | 3.892251E-5 | 45.0 | 42 |