##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546858_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1580258 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.896704209059532 31.0 31.0 34.0 30.0 34.0 2 32.28299619429232 33.0 31.0 34.0 30.0 34.0 3 32.24111569123523 34.0 31.0 34.0 30.0 34.0 4 35.93442083507883 37.0 35.0 37.0 35.0 37.0 5 35.91661614748984 37.0 35.0 37.0 35.0 37.0 6 35.96592834840893 37.0 35.0 37.0 35.0 37.0 7 36.19632173986779 37.0 35.0 37.0 35.0 37.0 8 36.048734447159895 37.0 35.0 37.0 35.0 37.0 9 37.867965863801984 39.0 38.0 39.0 35.0 39.0 10 37.63450082201767 39.0 37.0 39.0 35.0 39.0 11 37.44355984908793 39.0 37.0 39.0 35.0 39.0 12 37.08253462409303 39.0 37.0 39.0 34.0 39.0 13 37.00265020015719 39.0 37.0 39.0 33.0 39.0 14 38.217091133220016 40.0 37.0 41.0 33.0 41.0 15 38.30336375452616 40.0 37.0 41.0 33.0 41.0 16 38.36042089329717 40.0 37.0 41.0 34.0 41.0 17 38.283454980136156 40.0 37.0 41.0 34.0 41.0 18 38.02871429855125 39.0 36.0 41.0 34.0 41.0 19 37.800571805363425 39.0 36.0 41.0 34.0 41.0 20 37.51339401540761 39.0 35.0 41.0 34.0 41.0 21 37.391655666353216 39.0 35.0 41.0 33.0 41.0 22 37.363979805829175 39.0 35.0 41.0 33.0 41.0 23 37.26922375966456 39.0 35.0 41.0 33.0 41.0 24 37.208043243571616 39.0 35.0 41.0 33.0 41.0 25 37.08872222130817 39.0 35.0 41.0 33.0 41.0 26 37.031389178222796 39.0 35.0 41.0 33.0 41.0 27 36.95822454308094 39.0 35.0 41.0 33.0 41.0 28 36.84616182927092 38.0 35.0 41.0 33.0 41.0 29 36.68861983296399 38.0 35.0 41.0 32.0 41.0 30 36.543896629537706 38.0 35.0 41.0 31.0 41.0 31 36.24307359937428 38.0 35.0 41.0 31.0 41.0 32 35.79684013623092 38.0 35.0 41.0 29.0 41.0 33 35.3841410706353 38.0 35.0 41.0 25.0 41.0 34 34.963979932390785 38.0 35.0 41.0 22.0 41.0 35 34.66950713111403 38.0 35.0 41.0 20.0 41.0 36 34.516981404302335 38.0 34.0 41.0 18.0 41.0 37 34.23420795844729 38.0 34.0 41.0 18.0 41.0 38 34.280496602453525 38.0 34.0 41.0 18.0 41.0 39 34.14528197294366 38.0 34.0 40.0 18.0 41.0 40 34.01212966490282 38.0 34.0 40.0 18.0 41.0 41 33.882078116358215 37.0 34.0 40.0 16.0 41.0 42 33.846003627255804 37.0 34.0 40.0 16.0 41.0 43 33.7186756846034 37.0 33.0 40.0 15.0 41.0 44 33.54850980029843 37.0 33.0 40.0 15.0 41.0 45 33.49873248545491 36.0 33.0 40.0 15.0 41.0 46 33.33239572272376 36.0 33.0 40.0 15.0 41.0 47 33.305533653365465 36.0 33.0 40.0 15.0 41.0 48 33.15528730118753 36.0 33.0 40.0 15.0 41.0 49 33.11430918242464 36.0 33.0 40.0 15.0 41.0 50 32.991107781134474 35.0 33.0 40.0 15.0 41.0 51 32.489441597511295 35.0 32.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 6.0 12 4.0 13 5.0 14 17.0 15 51.0 16 110.0 17 305.0 18 720.0 19 1529.0 20 2624.0 21 4291.0 22 6615.0 23 9945.0 24 15691.0 25 26077.0 26 39479.0 27 45947.0 28 42694.0 29 37475.0 30 35524.0 31 37787.0 32 43860.0 33 55299.0 34 94268.0 35 158400.0 36 111855.0 37 139292.0 38 220927.0 39 449277.0 40 184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.59768847871677 20.732880327136456 24.365325155765703 23.304106038381075 2 40.70284725658722 22.094619992431618 25.319283306903053 11.88324944407812 3 27.22625039708706 22.850572501452294 37.45331458533986 12.469862516120786 4 24.0773342074522 24.534854435161854 37.387755670276626 14.00005568710932 5 21.47364544270619 28.298606936335712 36.446200557124214 13.78154706383388 6 19.301721617609278 36.151248720145695 34.58087223731821 9.966157424926815 7 76.10345905542006 4.179444116087374 17.4532259922114 2.263870836281164 8 76.00391834751035 4.141349070847925 17.21541672309205 2.63931585854968 9 71.46738064290767 5.580417881130803 18.989430839774265 3.9627706361872557 10 37.55279201244354 26.583001003633584 24.069550668308594 11.794656315614285 11 30.793389433877255 22.546887913239484 31.821196285669807 14.838526367213456 12 27.071845230335807 20.74743491252694 35.36947764225842 16.811242214878835 13 22.234090888956107 24.907388540352272 36.10859745687097 16.749923113820657 14 18.076478650954463 27.653712241925057 37.06685870281941 17.20295040430107 15 17.369632047425167 23.03263138044547 42.16887369024552 17.428862881883845 16 20.295736518973484 21.607484347492626 40.57021068711565 17.526568446418242 17 20.57853844119125 21.544709787895393 35.670694279035445 22.20605749187791 18 22.5251193159598 22.56416357328993 36.2023163306245 18.70840078012578 19 23.884770714655453 24.757602872442348 32.98834747237476 18.369278940527433 20 25.42375991768433 23.715367996871397 32.31136940929899 18.549502676145288 21 23.27423749792755 24.549345739746293 34.50328996910631 17.673126793219843 22 22.34926195595909 21.65867851958351 34.9839076910226 21.008151833434795 23 20.93651796099118 25.46381666791119 33.99172793303372 19.60793743806391 24 20.697569637363014 24.294450652994637 36.71767521505982 18.29030449458253 25 21.03884302436691 24.0730311126411 35.34688639450014 19.541239468491852 26 19.52073648733308 26.209201282322255 33.79024184658454 20.47982038376012 27 20.115955748997948 24.48948209722716 35.5987440025616 19.795818151213282 28 19.014869723804594 25.312512260656174 37.16545019863845 18.507167816900786 29 19.60363434325281 24.269454734606626 36.81588702604258 19.31102389609798 30 21.3126590721262 23.798392414403217 35.781435689615236 19.107512823855345 31 24.552319937630436 23.010166694299286 32.358197205772726 20.079316162297552 32 23.865786472841776 24.806202531485365 32.00173642531789 19.32627457035497 33 22.5868813826603 24.942699230125715 31.26748923277085 21.202930154443138 34 20.295483395749304 26.25495330509322 32.814704940585656 20.63485835857183 35 21.16331636985859 26.289821029224342 31.716213428440167 20.8306491724769 36 23.553052729364445 27.19790059597863 29.26977746671746 19.979269207939463 37 22.111389406033698 27.994289540062447 29.053420390847574 20.840900663056285 38 21.561669043915614 29.02671589069633 27.962396013815464 21.44921905157259 39 21.92616648673824 27.661116096232384 27.918036168777505 22.49468124825187 40 22.821526611477367 26.089790401314218 29.493095431252364 21.59558755595605 41 20.609672597765684 26.143958771289245 29.848290595586292 23.398078035358783 42 21.85763337379086 27.621628873259933 28.49933365311234 22.02140409983686 43 22.17270850709188 26.846438999201393 28.761885717395515 22.218966776311213 44 21.695191544671818 27.941196943790192 29.738245273872998 20.625366237664988 45 20.97530909509713 28.012640973815667 28.966535844146968 22.045514086940234 46 22.547204317269713 27.56708081844863 29.372482214929462 20.513232649352194 47 21.66184255988579 26.981416958496652 30.336375452615965 21.020365029001596 48 22.13265175686502 26.221541039501144 30.333464535537868 21.31234266809597 49 21.989320731171745 25.411103756475207 30.75725609362522 21.84231941872783 50 19.942629621239064 27.04064779295533 31.669575474384565 21.347147111421048 51 20.600053915246754 27.513988222176376 30.045600148836453 21.840357713740417 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1439.0 1 2398.5 2 3358.0 3 32851.5 4 62345.0 5 41829.0 6 21313.0 7 21085.5 8 20858.0 9 21240.5 10 21623.0 11 21535.5 12 21448.0 13 20544.5 14 19641.0 15 18401.5 16 17162.0 17 16070.5 18 14979.0 19 13809.0 20 12639.0 21 12062.0 22 11485.0 23 11303.5 24 11122.0 25 11317.5 26 12327.0 27 13141.0 28 15185.0 29 17229.0 30 19044.5 31 20860.0 32 24250.5 33 27641.0 34 31685.5 35 35730.0 36 39266.5 37 42803.0 38 46870.0 39 50937.0 40 59205.0 41 67473.0 42 75033.0 43 82593.0 44 86082.5 45 89572.0 46 93008.5 47 96445.0 48 103100.5 49 109756.0 50 111705.0 51 113654.0 52 108501.0 53 103348.0 54 93836.5 55 84325.0 56 80447.0 57 76569.0 58 73937.5 59 71306.0 60 65434.0 61 59562.0 62 53967.5 63 48373.0 64 42546.0 65 36719.0 66 31567.5 67 26416.0 68 22835.0 69 19254.0 70 16441.0 71 13628.0 72 11824.5 73 10021.0 74 8245.0 75 4644.0 76 2819.0 77 2099.5 78 1380.0 79 1103.0 80 826.0 81 558.5 82 291.0 83 197.5 84 104.0 85 78.0 86 52.0 87 37.0 88 22.0 89 15.0 90 8.0 91 7.0 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1580258.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.788516985006353 #Duplication Level Percentage of deduplicated Percentage of total 1 76.75339668201555 23.631232574011662 2 6.3970735464614945 3.939128150791291 3 2.8196534944807907 2.604388485199631 4 1.7732633627679362 2.1838459665388035 5 1.2914217985436731 1.9880480989634668 6 0.9818419037376587 1.8137673677890727 7 0.8156424735890953 1.757869550625332 8 0.731904233918075 1.8027396749907776 9 0.6328203252800474 1.753523940000779 >10 7.55124103991823 48.71593085126401 >50 0.21649254616003324 4.16660335627112 >100 0.030242878710613683 1.9196753237374156 >500 0.003754285812637961 0.7991687595967553 >1k 0.0010428571701772114 0.33527200432741333 >5k 0.0 0.0 >10k+ 2.0857143403544225E-4 2.588805895892615 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40314 2.55110241492212 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8984241813678525E-4 0.0 0.0 0.018351433753222575 0.0 2 1.8984241813678525E-4 0.0 0.0 0.06929248261992663 0.0 3 1.8984241813678525E-4 0.0 0.0 0.13073814529019945 0.0 4 1.8984241813678525E-4 0.0 0.0 0.2304054148120117 0.0 5 2.5312322418238035E-4 0.0 0.0 0.4687842111857684 0.0 6 2.5312322418238035E-4 0.0 0.0 0.9168123179885816 0.0 7 2.5312322418238035E-4 0.0 0.0 1.273083256025282 0.0 8 2.5312322418238035E-4 0.0 0.0 1.9918266510911509 0.0 9 2.5312322418238035E-4 0.0 0.0 2.462952252100606 0.0 10 2.5312322418238035E-4 0.0 0.0 2.994321180465468 0.0 11 2.5312322418238035E-4 0.0 0.0 3.2674411393582568 0.0 12 2.5312322418238035E-4 0.0 0.0 3.5080980447496546 0.0 13 2.5312322418238035E-4 0.0 0.0 3.6386463476217177 0.0 14 2.5312322418238035E-4 0.0 0.0 3.7148997189066595 0.0 15 2.5312322418238035E-4 0.0 0.0 3.772168848377923 0.0 16 3.796848362735705E-4 0.0 0.0 3.8499409590079594 0.0 17 3.796848362735705E-4 0.0 0.0 3.9313833563886402 0.0 18 3.796848362735705E-4 0.0 0.0 4.0617418168425665 0.0 19 3.796848362735705E-4 0.0 0.0 4.138627996187965 0.0 20 3.796848362735705E-4 0.0 0.0 4.219247743090053 0.0 21 3.796848362735705E-4 0.0 0.0 4.309233049286888 0.0 22 3.796848362735705E-4 0.0 0.0 4.40402769674319 0.0 23 4.429656423191656E-4 0.0 0.0 4.511858190244884 0.0 24 4.429656423191656E-4 0.0 0.0 4.600198195484535 0.0 25 5.062464483647607E-4 0.0 0.0 4.67999529190803 0.0 26 5.062464483647607E-4 0.0 0.0 4.760868162034301 0.0 27 5.062464483647607E-4 0.0 0.0 4.8468667774502645 0.0 28 5.062464483647607E-4 0.0 0.0 4.932295865611818 0.0 29 5.062464483647607E-4 0.0 0.0 5.032912347224314 0.0 30 5.062464483647607E-4 0.0 0.0 5.173332455839489 0.0 31 5.062464483647607E-4 0.0 0.0 5.275594238409171 0.0 32 5.062464483647607E-4 0.0 0.0 5.394182468938617 0.0 33 5.062464483647607E-4 0.0 0.0 5.511631644959241 0.0 34 5.062464483647607E-4 0.0 0.0 5.625220691811084 0.0 35 5.062464483647607E-4 0.0 0.0 5.740138635589885 0.0 36 5.062464483647607E-4 0.0 0.0 5.854803456144503 0.0 37 5.062464483647607E-4 0.0 0.0 5.971429981686534 0.0 38 5.062464483647607E-4 0.0 0.0 6.1243164090926925 0.0 39 5.062464483647607E-4 0.0 0.0 6.353013242141473 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGG 25 3.891472E-5 45.0 2 CGTTTTT 21210 0.0 43.896744 1 CGGTCTA 230 0.0 41.086956 31 CACGACG 235 0.0 40.212765 26 GCGAATA 45 1.9290383E-8 40.0 26 GTTTTTT 24680 0.0 38.87358 2 ATACGAG 70 0.0 38.57143 1 ATGGGAC 825 0.0 38.454544 5 GCGCGAC 585 0.0 38.076923 9 ACACGAC 570 0.0 37.894733 26 TACGGGA 410 0.0 37.865852 4 CGATCGA 30 1.1401154E-4 37.500004 10 GCGAGAC 570 0.0 37.499996 21 TAGGGAC 1130 0.0 36.836285 5 ACGGGCT 270 0.0 36.666668 5 AACACGT 510 0.0 36.61765 41 ACGGGAT 450 0.0 36.5 5 TAGCCGT 130 0.0 36.346153 44 CGACGGT 255 0.0 36.17647 28 GACGGTC 255 0.0 36.17647 29 >>END_MODULE