##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546855_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4467646 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95766517759017 33.0 31.0 34.0 30.0 34.0 2 32.344307942034796 34.0 31.0 34.0 31.0 34.0 3 32.31018684112394 34.0 31.0 34.0 30.0 34.0 4 35.976030106234916 37.0 35.0 37.0 35.0 37.0 5 35.950049086252584 37.0 35.0 37.0 35.0 37.0 6 36.002507360699575 37.0 35.0 37.0 35.0 37.0 7 36.2515044835692 37.0 36.0 37.0 35.0 37.0 8 36.117321739457424 37.0 36.0 37.0 35.0 37.0 9 37.918213305172344 39.0 39.0 39.0 35.0 39.0 10 37.68609889861462 39.0 38.0 39.0 35.0 39.0 11 37.48706119509021 39.0 37.0 39.0 35.0 39.0 12 37.07777854377898 39.0 35.0 39.0 34.0 39.0 13 36.977476057861345 39.0 35.0 39.0 33.0 39.0 14 38.17982355808853 40.0 37.0 41.0 33.0 41.0 15 38.268882986700376 40.0 37.0 41.0 33.0 41.0 16 38.3318873070964 40.0 37.0 41.0 34.0 41.0 17 38.26771816746448 40.0 36.0 41.0 34.0 41.0 18 38.05272888675602 39.0 36.0 41.0 34.0 41.0 19 37.873764617877065 39.0 36.0 41.0 34.0 41.0 20 37.631173329310336 39.0 35.0 41.0 34.0 41.0 21 37.498003870494664 39.0 35.0 41.0 33.0 41.0 22 37.48040623630431 39.0 35.0 41.0 33.0 41.0 23 37.39617395827691 39.0 35.0 41.0 33.0 41.0 24 37.35739156593875 39.0 35.0 41.0 33.0 41.0 25 37.25471445141356 39.0 35.0 41.0 33.0 41.0 26 37.21188451367902 39.0 35.0 41.0 33.0 41.0 27 37.14509990272282 39.0 35.0 41.0 33.0 41.0 28 37.04428282813813 39.0 35.0 41.0 33.0 41.0 29 36.90451571140596 39.0 35.0 41.0 33.0 41.0 30 36.77999152126198 38.0 35.0 41.0 32.0 41.0 31 36.503363068604806 38.0 35.0 41.0 31.0 41.0 32 36.15499594193452 38.0 35.0 41.0 30.0 41.0 33 35.81141545234336 38.0 35.0 41.0 29.0 41.0 34 35.458207073702795 38.0 35.0 41.0 25.0 41.0 35 35.20591067421188 38.0 35.0 41.0 23.0 41.0 36 35.08281318618351 38.0 35.0 41.0 23.0 41.0 37 34.81024929011833 38.0 35.0 41.0 22.0 41.0 38 34.88616152667423 38.0 35.0 41.0 23.0 41.0 39 34.77396038092544 38.0 35.0 41.0 22.0 41.0 40 34.66972293686653 38.0 35.0 41.0 21.0 41.0 41 34.56551526239993 38.0 34.0 40.0 21.0 41.0 42 34.53495196351725 38.0 34.0 40.0 21.0 41.0 43 34.41441622724808 38.0 34.0 40.0 20.0 41.0 44 34.26793976067039 37.0 34.0 40.0 20.0 41.0 45 34.2240103625041 37.0 34.0 40.0 20.0 41.0 46 34.05782754497559 37.0 34.0 40.0 20.0 41.0 47 34.04283777183779 37.0 34.0 40.0 20.0 41.0 48 33.87913635055239 36.0 34.0 40.0 20.0 41.0 49 33.84994155758984 36.0 34.0 40.0 20.0 41.0 50 33.7345020173935 36.0 34.0 40.0 19.0 41.0 51 33.17720540078601 35.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 4.0 11 9.0 12 20.0 13 32.0 14 55.0 15 122.0 16 276.0 17 710.0 18 1559.0 19 3204.0 20 5837.0 21 9674.0 22 15086.0 23 22880.0 24 37096.0 25 63026.0 26 93698.0 27 107343.0 28 101798.0 29 93074.0 30 92114.0 31 101179.0 32 120068.0 33 153901.0 34 272150.0 35 503202.0 36 310866.0 37 378188.0 38 605519.0 39 1374325.0 40 625.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.07148596822577 21.880225067071116 25.955838936209357 21.092450028493754 2 38.89907571011669 22.48244377464105 26.374650095374612 12.243830419867644 3 26.98297940347109 22.973865879257218 37.275312323312995 12.767842393958698 4 24.547423855873987 25.1318703406671 36.29020741571736 14.030498387741552 5 21.81739555909309 28.82728398803307 34.898646848922226 14.45667360395161 6 19.910462914922086 36.94930171280357 32.80239750418901 10.33783786808534 7 77.81637130605245 4.54431707436086 15.219491427924236 2.419820191662455 8 77.99487694414464 4.041412412711303 15.120378830372863 2.8433318127712 9 72.74206595598667 5.887328584225339 17.21667294141031 4.153932518377687 10 39.16677820937469 26.420356491987057 22.305370658284026 12.107494640354227 11 32.272073481202405 22.3183305033568 30.1110025279532 15.298593487487594 12 29.130709998061622 20.644361706366173 33.777385227030074 16.447543068542135 13 22.712162064765202 25.799873132293833 34.72927353689169 16.75869126604928 14 17.999232705545605 29.36604645936585 35.815572675185095 16.81914815990345 15 16.95387235246481 23.74930780102094 42.86364676162794 16.433173084886313 16 19.859787458540808 21.69610125779885 40.74736449575459 17.696746787905756 17 20.06837605307135 21.51038824472664 34.22802522849841 24.1932104737036 18 22.491553717550588 23.254102943697866 35.824302104508725 18.430041234242818 19 24.764920944945057 25.21770972901613 31.70528730342556 18.312082022613254 20 25.50108043475244 24.623728021423364 31.09022066654341 18.784970877280788 21 23.525968709248673 25.488277271744447 33.215433810109396 17.770320208897484 22 22.085433805632764 22.776692692303733 33.49137330934456 21.64650019271894 23 20.10423386275457 26.376015467653435 32.46465812197295 21.055092547619036 24 20.830432849872167 24.66435344250641 35.66090509409206 18.84430861352936 25 20.865081969341347 24.830682645849738 34.44021751051896 19.86401787428995 26 18.72131319267462 28.307860560124954 32.47443955944584 20.49638668775458 27 19.343050008886113 26.30532947328414 34.33732216026068 20.014298357569064 28 18.49815316611925 25.684980412503588 37.14414705193742 18.672719369439744 29 19.565292326204897 25.11781372114084 35.85577281637802 19.46112113627624 30 20.936506607730333 25.90872240101387 34.22598836165623 18.92878262959957 31 25.33580323955837 24.904099384776682 30.675684689431527 19.08441268623342 32 25.073025033764985 26.425280785451665 30.378548345146417 18.123145835636933 33 23.475047038194162 26.151646750884023 30.370602326146702 20.002703884775112 34 20.668759342168112 27.04475690329986 31.795379490675852 20.491104263856176 35 20.702155005119028 26.753149197586378 32.15890426412478 20.385791533169815 36 24.294382321249266 26.096293215711363 30.17580175331707 19.4335227097223 37 21.315229541463225 28.20579338649481 30.608736681464915 19.870240390577052 38 20.914414436595916 29.370769304461454 28.383560380567307 21.331255878375323 39 20.761291292998596 26.881225593970516 29.668151863419794 22.68933124961109 40 21.92440940933995 25.646100877285267 30.26123824492809 22.168251468446694 41 19.912566931220603 25.34748724496077 30.405340978224327 24.334604845594303 42 21.533151910424415 27.288710878167162 28.327512967679176 22.850624243729246 43 21.5547964185166 26.78126243663889 29.217176114669783 22.446765030174728 44 21.373604802170988 28.079418109671177 29.724915537175505 20.82206155098233 45 20.461759951437514 29.03721557169033 28.650233254828155 21.850791222044002 46 22.45730749481942 27.582959795829844 29.321056323620986 20.638676385729756 47 21.71476880666015 26.936825343816405 29.86004262647488 21.48836322304856 48 21.661855035067685 26.1385973732028 30.33758717678169 21.861960414947827 49 21.423026802034002 24.90893414563285 31.015729536315096 22.652309516018054 50 20.24130828628768 27.257531147275323 30.931434585461787 21.569725980975214 51 19.920960613262555 28.42138790763637 29.546812795821335 22.11083868327974 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4126.0 1 6424.5 2 8723.0 3 81415.5 4 154108.0 5 100634.5 6 47161.0 7 47342.5 8 47524.0 9 49363.5 10 51203.0 11 50886.5 12 50570.0 13 49664.5 14 48759.0 15 46076.5 16 43394.0 17 40452.5 18 37511.0 19 34584.0 20 31657.0 21 30552.0 22 29447.0 23 29635.0 24 29823.0 25 30094.0 26 34622.5 27 38880.0 28 42416.5 29 45953.0 30 51569.0 31 57185.0 32 64991.0 33 72797.0 34 85282.5 35 97768.0 36 105699.5 37 113631.0 38 131758.0 39 149885.0 40 183401.0 41 216917.0 42 256607.0 43 296297.0 44 324034.0 45 351771.0 46 357689.0 47 363607.0 48 357233.0 49 350859.0 50 321871.0 51 292883.0 52 275078.5 53 257274.0 54 236149.5 55 215025.0 56 206494.0 57 197963.0 58 190404.5 59 182846.0 60 169035.5 61 155225.0 62 139795.0 63 124365.0 64 108543.0 65 92721.0 66 77522.0 67 62323.0 68 53155.0 69 43987.0 70 37201.5 71 30416.0 72 24603.5 73 18791.0 74 15322.5 75 8928.0 76 6002.0 77 4502.5 78 3003.0 79 2327.5 80 1652.0 81 1221.5 82 791.0 83 578.5 84 366.0 85 222.5 86 79.0 87 73.5 88 68.0 89 48.5 90 29.0 91 25.0 92 21.0 93 27.5 94 34.0 95 19.0 96 4.0 97 3.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4467646.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.273995542749706 #Duplication Level Percentage of deduplicated Percentage of total 1 80.04423922923945 18.6294926704411 2 7.32091779847413 3.407740164210478 3 2.592459523897885 1.8101067421187518 4 1.3977971732983803 1.3012930072405857 5 0.9075837721818645 1.056155033421634 6 0.6582235463861806 0.9191695130834923 7 0.5261310743699747 0.8571620595852234 8 0.4198249900685118 0.7816803958071586 9 0.3192978398243739 0.6688202850793878 >10 3.730502238963503 20.549699463885016 >50 1.382589011035525 23.156322732051414 >100 0.6927336145810198 21.998371462901726 >500 0.0037513734848066606 0.5858923602611741 >1k 0.0037513734847727034 1.7408355474350066 >5k 9.872035486243957E-5 0.12299144331199059 >10k+ 9.872035486243957E-5 2.414267119165708 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 105077 2.3519544744592564 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT 5353 0.11981701325485501 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCT 4599 0.10294011656250295 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4470 0.10005268994007135 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.714945633561836E-5 0.0 0.0 0.05042924170804938 0.0 2 6.714945633561836E-5 0.0 0.0 0.17367087723602093 0.0 3 6.714945633561836E-5 0.0 0.0 0.2985240997160473 0.0 4 6.714945633561836E-5 0.0 0.0 0.44515612920092595 0.0 5 6.714945633561836E-5 0.0 0.0 0.8001081553910045 0.0 6 6.714945633561836E-5 0.0 0.0 1.459291985085658 0.0 7 6.714945633561836E-5 0.0 0.0 1.9400820924486855 0.0 8 6.714945633561836E-5 0.0 0.0 2.782561554787465 0.0 9 6.714945633561836E-5 0.0 0.0 3.348161425502379 0.0 10 6.714945633561836E-5 0.0 0.0 4.043941708899944 0.0 11 6.714945633561836E-5 0.0 0.0 4.508504030981864 0.0 12 6.714945633561836E-5 0.0 0.0 4.899604847832617 0.0 13 8.953260844749114E-5 0.0 0.0 5.091607526648262 0.0 14 8.953260844749114E-5 0.0 0.0 5.196830724726175 0.0 15 8.953260844749114E-5 0.0 0.0 5.295383743474751 0.0 16 8.953260844749114E-5 0.0 0.0 5.447902541965052 0.0 17 8.953260844749114E-5 0.0 0.0 5.615888098564658 0.0 18 8.953260844749114E-5 0.0 0.0 5.885314100535271 0.0 19 8.953260844749114E-5 0.0 0.0 6.012763768660275 0.0 20 1.1191576055936393E-4 0.0 0.0 6.155724961198806 0.0 21 1.1191576055936393E-4 0.0 0.0 6.31545113466913 0.0 22 1.1191576055936393E-4 0.0 0.0 6.485585473871475 0.0 23 1.1191576055936393E-4 0.0 0.0 6.67268624237462 0.0 24 1.1191576055936393E-4 0.0 0.0 6.8305546142196585 0.0 25 1.1191576055936393E-4 0.0 0.0 6.9633090893951755 0.0 26 1.1191576055936393E-4 0.0 0.0 7.098928608041013 0.0 27 1.1191576055936393E-4 0.0 0.0 7.241800267971097 0.0 28 1.3429891267123672E-4 0.0 0.0 7.390133417016478 0.0 29 1.3429891267123672E-4 0.0 0.0 7.5464125850615735 0.0 30 1.3429891267123672E-4 0.0 0.0 7.7648497665213405 0.0 31 1.566820647831095E-4 0.0 0.0 7.930731306822429 0.0 32 1.566820647831095E-4 0.0 0.0 8.10021653461353 0.0 33 1.566820647831095E-4 0.0 0.0 8.26441933850623 0.0 34 1.566820647831095E-4 0.0 0.0 8.435225172271931 0.0 35 1.566820647831095E-4 0.0 0.0 8.623400332076445 0.0 36 1.566820647831095E-4 0.0 0.0 8.79821275007017 0.0 37 1.566820647831095E-4 0.0 0.0 8.9711449832865 0.0 38 1.790652168949823E-4 0.0 0.0 9.18125563216065 0.0 39 1.790652168949823E-4 0.0 0.0 9.454128639556492 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 50245 0.0 43.786446 1 GTACGAG 435 0.0 39.827583 1 GTTTTTT 58275 0.0 38.745174 2 ACGGGAC 970 0.0 38.041237 5 GTTAGCG 280 0.0 37.767857 1 CGTAAGG 480 0.0 37.500004 2 AGGGCGA 2780 0.0 37.14928 6 CGACGGT 585 0.0 36.923077 28 TAGGGAC 2975 0.0 36.529415 5 TAACGCG 105 0.0 36.42857 1 GCGCGAC 1380 0.0 36.358696 9 TCTAGCG 155 0.0 36.29032 1 TGGGCGA 1660 0.0 36.05422 6 CTATACG 100 0.0 36.0 1 ATTACGC 50 4.8843503E-8 36.0 14 TTACGAG 175 0.0 36.0 1 TATGGGC 1390 0.0 35.935253 4 TCACGAC 610 0.0 35.77869 25 ATAGGGA 4015 0.0 35.697384 4 TACGCGG 310 0.0 35.564514 2 >>END_MODULE