##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546853_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1855181 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.982969316740522 33.0 31.0 34.0 30.0 34.0 2 32.369533754388385 34.0 31.0 34.0 31.0 34.0 3 32.414550386188736 34.0 31.0 34.0 31.0 34.0 4 36.02692405754479 37.0 35.0 37.0 35.0 37.0 5 35.98949320847939 37.0 35.0 37.0 35.0 37.0 6 36.03605200786338 37.0 35.0 37.0 35.0 37.0 7 36.26603495831404 37.0 36.0 37.0 35.0 37.0 8 36.138792926404484 37.0 36.0 37.0 35.0 37.0 9 37.96166250085571 39.0 39.0 39.0 35.0 39.0 10 37.69983953048247 39.0 38.0 39.0 35.0 39.0 11 37.47895003236881 39.0 37.0 39.0 35.0 39.0 12 36.957092057324864 39.0 35.0 39.0 33.0 39.0 13 36.83073996553436 39.0 35.0 39.0 33.0 39.0 14 37.9981554360464 40.0 36.0 41.0 33.0 41.0 15 38.118197631390146 40.0 36.0 41.0 33.0 41.0 16 38.2008763565388 40.0 36.0 41.0 34.0 41.0 17 38.14191768889397 40.0 36.0 41.0 34.0 41.0 18 38.04113992111821 40.0 36.0 41.0 34.0 41.0 19 37.96266455941496 40.0 36.0 41.0 34.0 41.0 20 37.8393601486863 40.0 35.0 41.0 34.0 41.0 21 37.69561406676761 40.0 35.0 41.0 33.0 41.0 22 37.66925760882631 40.0 35.0 41.0 33.0 41.0 23 37.581978793443874 39.0 35.0 41.0 33.0 41.0 24 37.562742934516905 39.0 35.0 41.0 33.0 41.0 25 37.44819993305236 39.0 35.0 41.0 33.0 41.0 26 37.38959702584276 39.0 35.0 41.0 33.0 41.0 27 37.33186788782334 39.0 35.0 41.0 33.0 41.0 28 37.262372781954966 39.0 35.0 41.0 33.0 41.0 29 37.18183023651061 39.0 35.0 41.0 33.0 41.0 30 37.11913446720293 39.0 35.0 41.0 33.0 41.0 31 36.93341889551478 39.0 35.0 41.0 32.0 41.0 32 36.781108689664244 39.0 35.0 41.0 32.0 41.0 33 36.64459748132393 39.0 35.0 41.0 31.0 41.0 34 36.46479400123223 39.0 35.0 41.0 31.0 41.0 35 36.32400396511176 39.0 35.0 41.0 30.0 41.0 36 36.22996408436697 39.0 35.0 41.0 30.0 41.0 37 35.96692128692564 39.0 35.0 41.0 30.0 41.0 38 36.05368856192469 39.0 35.0 41.0 30.0 41.0 39 35.95262349064593 38.0 35.0 41.0 30.0 41.0 40 35.83938278798672 38.0 35.0 41.0 29.0 41.0 41 35.77702067884481 38.0 35.0 41.0 29.0 41.0 42 35.777845935248365 38.0 35.0 41.0 29.0 41.0 43 35.67064291839988 38.0 35.0 41.0 29.0 41.0 44 35.52082842590561 38.0 35.0 40.0 29.0 41.0 45 35.46037610346376 38.0 35.0 40.0 28.0 41.0 46 35.29949961755753 37.0 35.0 40.0 28.0 41.0 47 35.2757208056788 37.0 35.0 40.0 28.0 41.0 48 35.13287167128167 37.0 35.0 40.0 27.0 41.0 49 35.10116101879008 37.0 35.0 40.0 27.0 41.0 50 34.99293114795807 37.0 34.0 40.0 27.0 41.0 51 34.445375949839935 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 6.0 12 5.0 13 22.0 14 25.0 15 49.0 16 88.0 17 265.0 18 530.0 19 1119.0 20 1923.0 21 3299.0 22 4915.0 23 7316.0 24 10959.0 25 16744.0 26 23341.0 27 27426.0 28 28506.0 29 28898.0 30 31773.0 31 37833.0 32 47061.0 33 62526.0 34 119380.0 35 240352.0 36 119316.0 37 156803.0 38 260980.0 39 623430.0 40 286.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.48542217713528 22.351619599381408 27.84391388225731 15.319044341226004 2 33.96520339524823 23.967526618696507 28.687928563304606 13.379341422750665 3 29.25935528662702 24.501814108704217 32.60377289331877 13.635057711349999 4 26.521239706529983 26.388099058798037 31.687204644722 15.403456589949982 5 23.259563352578535 30.933262037504694 30.24804587800328 15.559128731913491 6 21.186558077082505 39.29196126954728 28.58394949064269 10.937531162727518 7 84.52862550877785 4.65544871362956 8.521648291999542 2.29427748559305 8 84.92130956494272 3.89546895963251 8.552750378534494 2.6304710968902767 9 80.02561475133693 5.924165890012889 10.347453968103382 3.7027653905467988 10 43.676385215243144 28.427468802235467 15.76697907104482 12.129166911476561 11 36.29926136587211 23.07030958165268 24.93406303751494 15.696366014960264 12 32.28860148955816 22.23750674462492 29.0608840862428 16.413007679574125 13 23.391194713615544 31.17625719538956 29.200493105524473 16.23205498547042 14 17.971561804481613 33.695795720201964 30.736946960970386 17.59569551434604 15 16.7719483974879 24.79687965756441 41.42366701685711 17.007504928090576 16 19.85348060377936 22.16576172351916 39.09419080941428 18.886566863287193 17 20.332409613940637 21.591208620614378 29.848677837903686 28.227703927541302 18 23.264360728144585 23.893355958259598 32.61315203206587 20.22913128152994 19 26.635622076767714 25.537562103104765 27.72042188875371 20.106393931373812 20 27.60900418880961 24.881076293903398 26.571800810810377 20.93811870647662 21 24.70438194440327 26.094596699729028 29.69882723033494 19.502194125532764 22 23.93572379191033 23.549076882525206 28.525464631213882 23.989734694350577 23 21.270646907229 27.91905479842668 28.367474656111725 22.442823638232603 24 21.1555098936438 25.550175427626737 33.59116981038508 19.70314486834438 25 21.030508613445264 26.414781091440677 31.756146704822875 20.798563590291188 26 19.987699313436263 29.4792260162216 28.579798952231616 21.953275718110525 27 20.29872017878579 27.975114018524337 30.69732818522829 21.028837617461583 28 18.400414838228723 26.711194217707057 35.33046101701128 19.55792992705294 29 19.084337323420193 25.961671664382074 34.16103334391631 20.792957668281424 30 21.163056327118486 26.290588357685852 32.39457497678124 20.15178033841442 31 26.525983178999784 25.16110287891047 27.387085141557616 20.92582880053213 32 26.13459279714486 26.80897443430048 27.723817783817324 19.33261498473734 33 24.62093995141175 25.637606249740593 28.539425533142047 21.20202826570561 34 21.01719454867207 26.456987215802663 30.312567884211838 22.21325035131343 35 21.10182240978104 26.17065396853461 30.86270288451639 21.864820737167964 36 26.84471218711274 25.394287673278242 28.250019809387872 19.510980330221148 37 21.71631770700541 28.660384081122004 29.268842231566623 20.354455980305968 38 21.573312792660122 30.404418760218004 26.567865884784286 21.45440256233758 39 21.605169522542546 28.245599755495554 27.809038578985017 22.340192142976882 40 22.72274241704718 26.057080144740596 28.65930601919705 22.56087141901518 41 19.963442920124773 25.306533432586903 29.306250980362563 25.42377266692576 42 22.858146994821528 26.716476721139337 26.950901286720814 23.47447499731832 43 22.524486829047945 26.788760773207578 27.448211252702563 23.238541145041914 44 21.324927325150483 28.72204922322943 28.27562378010555 21.677399671514532 45 20.484146829878057 30.194034975563035 26.962706064799068 22.359112129759843 46 23.31680844079365 28.413831318884785 28.158654061247933 20.11070617907363 47 22.60313144647342 26.957154045885552 28.637421362120463 21.802293145520572 48 22.608413949905696 25.8149474363957 29.35767453418292 22.21896407951569 49 21.336893812517484 25.115878181158603 30.791766409854347 22.755461596469562 50 20.477031621173353 28.58766880428379 29.1136013143731 21.82169826016976 51 20.323246087578518 29.225665851472176 28.08178824599864 22.369299814950672 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1450.0 1 2344.0 2 3238.0 3 14561.5 4 25885.0 5 17449.5 6 9014.0 7 9240.5 8 9467.0 9 9781.0 10 10095.0 11 10220.0 12 10345.0 13 10025.0 14 9705.0 15 9479.5 16 9254.0 17 8674.0 18 8094.0 19 8225.0 20 8356.0 21 8641.0 22 8926.0 23 10082.5 24 11239.0 25 12364.0 26 15573.5 27 17658.0 28 19809.5 29 21961.0 30 27263.0 31 32565.0 32 35016.0 33 37467.0 34 42529.0 35 47591.0 36 52632.5 37 57674.0 38 66574.5 39 75475.0 40 88961.5 41 102448.0 42 122152.0 43 141856.0 44 146989.5 45 152123.0 46 154141.0 47 156159.0 48 151683.0 49 147207.0 50 140827.0 51 134447.0 52 124884.5 53 115322.0 54 103504.0 55 91686.0 56 87415.5 57 83145.0 58 77226.5 59 71308.0 60 68070.0 61 64832.0 62 58122.0 63 51412.0 64 45415.0 65 39418.0 66 33995.0 67 28572.0 68 22905.5 69 17239.0 70 14317.5 71 11396.0 72 9860.5 73 8325.0 74 6573.0 75 3529.5 76 2238.0 77 1662.0 78 1086.0 79 819.0 80 552.0 81 391.5 82 231.0 83 236.5 84 242.0 85 155.0 86 68.0 87 54.0 88 40.0 89 29.0 90 18.0 91 20.0 92 22.0 93 16.0 94 10.0 95 9.5 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1855181.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.99426593364339 #Duplication Level Percentage of deduplicated Percentage of total 1 79.81669304687918 17.555095728170464 2 6.235985835905849 2.7431186166669344 3 2.1786537407435267 1.4375366925372028 4 1.2531842527671369 1.1025147087685836 5 0.7838695893320268 0.8620318102532217 6 0.6167500055174269 0.8138978181555789 7 0.4634046990514217 0.7134572330085867 8 0.40233694564028094 0.7079284621873732 9 0.3561553332792259 0.7050037602445818 >10 5.4670356866382965 31.10684857474145 >50 2.1448869215501194 32.47983856413767 >100 0.27482064908597736 7.7471160186744115 >500 0.004978634887728393 0.7784455926985779 >1k 9.957269775456787E-4 0.3631067077491187 >5k 0.0 0.0 >10k+ 2.4893174438641967E-4 0.8840597120061849 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16147 0.8703732951124445 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2715 0.1463469063126455 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030940377246209398 0.0 2 0.0 0.0 0.0 0.09486944939604276 0.0 3 0.0 0.0 0.0 0.15675020388846156 0.0 4 0.0 0.0 0.0 0.2395992628212557 0.0 5 0.0 0.0 0.0 0.4256727510684941 0.0 6 0.0 0.0 0.0 0.7418144105615571 0.0 7 0.0 0.0 0.0 0.9561331212426173 0.0 8 0.0 0.0 0.0 1.4816344065619473 0.0 9 0.0 0.0 0.0 1.7660271423650846 0.0 10 0.0 0.0 0.0 2.1793560843928437 0.0 11 0.0 0.0 0.0 2.4664439750083686 0.0 12 0.0 0.0 0.0 2.727604476328725 0.0 13 0.0 0.0 0.0 2.8391299824653227 0.0 14 0.0 0.0 0.0 2.8867803195483352 0.0 15 0.0 0.0 0.0 2.9435941829934653 0.0 16 0.0 0.0 0.0 3.0526401467026667 0.0 17 0.0 0.0 0.0 3.181037321964811 0.0 18 0.0 0.0 0.0 3.382850514316393 0.0 19 0.0 0.0 0.0 3.4812236649685393 0.0 20 0.0 0.0 0.0 3.588922051271547 0.0 21 0.0 0.0 0.0 3.7199065751535834 0.0 22 0.0 0.0 0.0 3.8561196993716518 0.0 23 0.0 0.0 0.0 4.003975892379234 0.0 24 0.0 0.0 0.0 4.119544130734414 0.0 25 0.0 0.0 0.0 4.219857792851479 0.0 26 0.0 0.0 0.0 4.31596701346122 0.0 27 0.0 0.0 0.0 4.420916341855593 0.0 28 0.0 0.0 0.0 4.526135185731204 0.0 29 0.0 0.0 0.0 4.64418296651378 0.0 30 0.0 0.0 0.0 4.80648518931576 0.0 31 0.0 0.0 0.0 4.937038488427814 0.0 32 0.0 0.0 0.0 5.065597372978702 0.0 33 0.0 0.0 0.0 5.193455517278368 0.0 34 0.0 0.0 0.0 5.326380552625324 0.0 35 0.0 0.0 0.0 5.478548993332726 0.0 36 5.3903096247751565E-5 0.0 0.0 5.615247245417024 0.0 37 5.3903096247751565E-5 0.0 0.0 5.750166695325146 0.0 38 5.3903096247751565E-5 0.0 0.0 5.905784934192405 0.0 39 5.3903096247751565E-5 0.0 0.0 6.099836080684311 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 80 0.0 45.0 1 CTTACCG 20 7.034408E-4 45.0 29 CGTTTTT 8730 0.0 42.5 1 TCACGAC 450 0.0 41.0 25 ATATCGG 55 6.184564E-11 40.909092 2 TGCAACG 55 6.184564E-11 40.909092 1 CGGTCTA 440 0.0 40.397728 31 ACGTAAG 45 1.929402E-8 40.000004 1 CACGACG 445 0.0 39.94382 26 TAGGGAC 1645 0.0 39.392097 5 ACGTTAG 80 0.0 39.375 1 TAATGCG 40 3.4597542E-7 39.375 1 ACGACGG 465 0.0 38.70968 27 ACGTAGG 195 0.0 38.076927 2 CGTAAGG 285 0.0 37.894737 2 ACGGTCT 470 0.0 37.81915 30 CGGGATC 340 0.0 37.72059 6 TACGGGT 90 0.0 37.500004 4 TTACGGG 665 0.0 37.218044 3 TAGACGG 230 0.0 37.173912 2 >>END_MODULE