##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546851_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1379469 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.948762168631553 33.0 31.0 34.0 30.0 34.0 2 32.35467415360548 34.0 31.0 34.0 31.0 34.0 3 32.34412371716943 34.0 31.0 34.0 30.0 34.0 4 36.00485259183063 37.0 35.0 37.0 35.0 37.0 5 35.97221902050717 37.0 35.0 37.0 35.0 37.0 6 36.03216237552275 37.0 35.0 37.0 35.0 37.0 7 36.26332161143164 37.0 36.0 37.0 35.0 37.0 8 36.13812198751839 37.0 37.0 37.0 35.0 37.0 9 37.978454028325395 39.0 39.0 39.0 35.0 39.0 10 37.629403777830454 39.0 37.0 39.0 35.0 39.0 11 37.500841990650024 39.0 37.0 39.0 35.0 39.0 12 37.20748853363142 39.0 37.0 39.0 34.0 39.0 13 37.136016104747554 39.0 37.0 39.0 33.0 39.0 14 38.40237874138527 40.0 38.0 41.0 34.0 41.0 15 38.49020093963692 40.0 38.0 41.0 34.0 41.0 16 38.53205182573875 40.0 37.0 41.0 34.0 41.0 17 38.46438810875779 40.0 37.0 41.0 34.0 41.0 18 38.241179033381684 40.0 37.0 41.0 34.0 41.0 19 38.06080310612272 40.0 37.0 41.0 34.0 41.0 20 37.79773594042345 40.0 35.0 41.0 34.0 41.0 21 37.7022970432826 40.0 35.0 41.0 34.0 41.0 22 37.67598981927104 40.0 35.0 41.0 33.0 41.0 23 37.57794702164384 39.0 35.0 41.0 33.0 41.0 24 37.55471851850241 39.0 35.0 41.0 33.0 41.0 25 37.473913513098154 39.0 35.0 41.0 33.0 41.0 26 37.4311456074765 39.0 35.0 41.0 33.0 41.0 27 37.35690399711773 39.0 35.0 41.0 33.0 41.0 28 37.28931929604797 39.0 35.0 41.0 33.0 41.0 29 37.164869235916136 39.0 35.0 41.0 33.0 41.0 30 37.05745471627126 39.0 35.0 41.0 33.0 41.0 31 36.77978555516652 39.0 35.0 41.0 32.0 41.0 32 36.38487925426378 39.0 35.0 41.0 30.0 41.0 33 35.99213175504487 39.0 35.0 41.0 28.0 41.0 34 35.59531094935805 39.0 35.0 41.0 24.0 41.0 35 35.32435814070487 39.0 35.0 41.0 23.0 41.0 36 35.20278020020747 39.0 35.0 41.0 22.0 41.0 37 34.934735032102935 39.0 35.0 41.0 20.0 41.0 38 35.01987866345674 39.0 35.0 41.0 21.0 41.0 39 34.91232785948796 39.0 35.0 41.0 20.0 41.0 40 34.83327425262909 39.0 35.0 41.0 19.0 41.0 41 34.73265510134697 39.0 35.0 41.0 18.0 41.0 42 34.72619609429425 39.0 35.0 41.0 18.0 41.0 43 34.628753527625484 39.0 35.0 41.0 18.0 41.0 44 34.50658043058597 38.0 34.0 41.0 18.0 41.0 45 34.47239771245312 38.0 34.0 41.0 18.0 41.0 46 34.31581354854658 38.0 34.0 40.0 18.0 41.0 47 34.299563817671874 38.0 34.0 40.0 18.0 41.0 48 34.17660491102011 38.0 34.0 40.0 18.0 41.0 49 34.14220616773556 38.0 34.0 40.0 18.0 41.0 50 34.03792546262366 38.0 34.0 40.0 18.0 41.0 51 33.52693826392619 37.0 33.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 10.0 15 29.0 16 69.0 17 190.0 18 480.0 19 990.0 20 1791.0 21 3096.0 22 4839.0 23 7433.0 24 11952.0 25 20670.0 26 31403.0 27 35835.0 28 33098.0 29 28378.0 30 26310.0 31 28256.0 32 32879.0 33 41859.0 34 72084.0 35 131806.0 36 81103.0 37 103220.0 38 184953.0 39 496564.0 40 165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.053810560440287 22.023184283227824 26.51991454682925 21.40309060950264 2 37.44520536525286 23.868749497089098 27.016844887416823 11.669200250241216 3 26.548548753179666 23.546016619438348 37.57351560636738 12.331919021014608 4 23.092871242485334 25.07269101371615 38.56860864579052 13.265829098008004 5 22.024851591445692 29.243571258216022 35.717439101567344 13.01413804877094 6 18.7301780612685 38.457841386794485 33.091863608388444 9.720116943548568 7 80.09538452839462 3.1930402205486312 15.196354539319115 1.5152207117376324 8 80.99167143299341 2.937289638259359 14.386260220418146 1.6847787083290746 9 76.11798452882958 4.1142642567538665 16.40218083914898 3.365570375267585 10 33.36928919751006 25.082477388038445 28.21868414585612 13.32954926859538 11 29.51367518951133 22.5039489832682 31.606002019617698 16.376373807602782 12 27.531608176769467 21.84673957877995 33.86636452142092 16.755287723029657 13 22.08842677870978 26.3226647354888 35.0311605407588 16.55774794504262 14 17.568571675043078 29.64669738863287 35.83132350201418 16.95340743430987 15 16.912087187171295 24.81875272296804 42.571380726931885 15.69777936292878 16 19.058637780189333 22.646395098403808 41.14372994246337 17.151237178943493 17 19.14127827446648 22.348744335682788 36.046333770458055 22.463643619392677 18 20.43097742682148 23.90898236930297 37.52900572611635 18.131034477759194 19 22.695326970015273 24.95278980535264 34.251440228087766 18.100442996544324 20 23.748775797063942 24.76960337637163 33.62866436288166 17.852956463682766 21 21.90850247450287 25.421303414574737 35.72657305093482 16.943621059987574 22 20.829826549201176 22.78144706405146 36.083521992882766 20.305204393864596 23 18.824272238085815 26.54282191190958 35.36302736777702 19.269878482227583 24 18.52654898370315 25.763609040870072 37.82027722261247 17.88956475281431 25 18.536335358025443 26.53992224544372 36.555877660172136 18.3678647363587 26 18.201423881218062 28.149309625660308 34.48442842861999 19.16483806450163 27 18.786939032337806 26.442348468867365 36.450329800814664 18.320382697980165 28 16.898241279796792 26.489830507245905 39.13911802294941 17.472810190007895 29 17.750453254114447 25.15881110775233 38.71859389373738 18.37214174439585 30 18.97693967751359 26.00493378249167 36.64866698707981 18.369459552914925 31 22.061894830547114 25.247323426622852 33.510430462736025 19.18035128009401 32 22.657123864327506 26.175289187361223 33.03974210366453 18.127844844646745 33 21.354521196199407 26.901945603706935 32.53722990513016 19.206303294963497 34 18.967950711469413 27.67905621655869 33.46142609946291 19.891566972508986 35 19.972395175244966 27.573000915569683 32.35252115125458 20.10208275793077 36 22.86416004999025 27.761551727512547 30.641500461409425 18.73278776108778 37 20.054310752905646 29.5721034687985 31.28268920867377 19.09089656962208 38 20.691729933764368 29.852428724385977 29.442053427804467 20.013787914045185 39 19.98094919131927 29.23508973380337 30.057725110169205 20.72623596470816 40 21.115081237780625 27.422073276021425 30.5262387193913 20.936606766806648 41 19.005138933894127 27.33646062361677 31.343002271163762 22.31539817132534 42 21.10145280539106 28.474217253160454 29.429004928708075 20.99532501274041 43 20.71833437358868 29.071403561805305 29.51469007277438 20.695571991831642 44 20.3672572562341 29.522664155555507 30.350736406544836 19.759342181665556 45 19.810376311464772 29.929849819024568 29.359702900173907 20.900070969336753 46 21.364307570521703 29.23313245893891 30.168347385841944 19.234212584697445 47 20.835118440501383 27.99019042834598 31.155321359160666 20.019369771991975 48 21.288481292439336 27.323049666212146 30.851798771846266 20.53667026950225 49 20.207703108949893 26.392401713992847 32.0443590975948 21.35553607946246 50 19.1493973405709 28.448482713275908 31.72575824465791 20.676361701495285 51 19.14214817440624 29.19239214509351 30.545883959697534 21.119575720802715 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 872.0 1 1427.5 2 1983.0 3 22153.0 4 42323.0 5 29225.0 6 16127.0 7 16131.0 8 16135.0 9 16517.5 10 16900.0 11 16802.0 12 16704.0 13 16001.5 14 15299.0 15 14523.5 16 13748.0 17 12873.5 18 11999.0 19 11205.0 20 10411.0 21 9908.0 22 9405.0 23 9779.5 24 10154.0 25 11295.0 26 14128.5 27 15821.0 28 18149.0 29 20477.0 30 22982.0 31 25487.0 32 29396.5 33 33306.0 34 39066.5 35 44827.0 36 48157.0 37 51487.0 38 55602.5 39 59718.0 40 68691.5 41 77665.0 42 85760.0 43 93855.0 44 98920.5 45 103986.0 46 108079.5 47 112173.0 48 110633.5 49 109094.0 50 103067.5 51 97041.0 52 89672.5 53 82304.0 54 74049.5 55 65795.0 56 60265.0 57 54735.0 58 49218.5 59 43702.0 60 38599.5 61 33497.0 62 28379.0 63 23261.0 64 19224.5 65 15188.0 66 12099.5 67 9011.0 68 7051.0 69 5091.0 70 4084.0 71 3077.0 72 2524.5 73 1972.0 74 1642.5 75 941.5 76 570.0 77 397.0 78 224.0 79 179.0 80 134.0 81 118.0 82 102.0 83 65.5 84 29.0 85 20.0 86 11.0 87 9.5 88 8.0 89 5.5 90 3.0 91 4.5 92 6.0 93 4.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1379469.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.7165873138294 #Duplication Level Percentage of deduplicated Percentage of total 1 75.2581193094848 22.36414473534895 2 6.266021303136125 3.7240953832991948 3 2.9827674698607782 2.659130098649034 4 1.8552275547980321 2.2052412647671176 5 1.463553825749574 2.1745912525688134 6 1.1801290225153185 2.104164428349636 7 0.9397250952987127 1.9547795991808596 8 0.8136692565001991 1.934357880429345 9 0.7248042395821777 1.9384837623879756 >10 8.276456096901008 50.993018729974914 >50 0.2113531964560212 3.7938924829091976 >100 0.024713710388994267 1.560908891380391 >500 0.002718508043682684 0.5240729107341969 >1k 4.942741897604881E-4 0.22986942413089073 >5k 0.0 0.0 >10k+ 2.4713709488024404E-4 1.8392491558894657 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25044 1.8154811742779287 No Hit GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC 1669 0.12098858328820727 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG 1461 0.1059103176657105 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4498332329323819E-4 0.0 0.0 0.021530023509045874 0.0 2 1.4498332329323819E-4 0.0 0.0 0.08865730219381515 0.0 3 1.4498332329323819E-4 0.0 0.0 0.15955414728420864 0.0 4 1.4498332329323819E-4 0.0 0.0 0.24364447479428678 0.0 5 1.4498332329323819E-4 0.0 0.0 0.5074416315263337 0.0 6 1.4498332329323819E-4 0.0 0.0 0.8199531848849086 0.0 7 1.4498332329323819E-4 0.0 0.0 1.0629452347243757 0.0 8 1.4498332329323819E-4 0.0 0.0 1.5395779100508964 0.0 9 1.4498332329323819E-4 0.0 0.0 1.839765880929546 0.0 10 1.4498332329323819E-4 0.0 0.0 2.315383672993014 0.0 11 1.4498332329323819E-4 0.0 0.0 2.537063174308375 0.0 12 1.4498332329323819E-4 0.0 0.0 2.790783990071542 0.0 13 1.4498332329323819E-4 0.0 0.0 2.896839291060546 0.0 14 1.4498332329323819E-4 0.0 0.0 2.9490332874461114 0.0 15 1.4498332329323819E-4 0.0 0.0 3.0005748588768575 0.0 16 2.174749849398573E-4 0.0 0.0 3.082925386507417 0.0 17 2.174749849398573E-4 0.0 0.0 3.175642221753443 0.0 18 2.174749849398573E-4 0.0 0.0 3.32685982794829 0.0 19 2.174749849398573E-4 0.0 0.0 3.4057307558198118 0.0 20 2.174749849398573E-4 0.0 0.0 3.480107200669243 0.0 21 2.174749849398573E-4 0.0 0.0 3.5648499531341407 0.0 22 2.174749849398573E-4 0.0 0.0 3.661843796417317 0.0 23 2.174749849398573E-4 0.0 0.0 3.7623897311211776 0.0 24 2.174749849398573E-4 0.0 0.0 3.849162250112181 0.0 25 2.174749849398573E-4 0.0 0.0 3.9265108530891233 0.0 26 2.174749849398573E-4 0.0 0.0 4.005889222592171 0.0 27 2.174749849398573E-4 0.0 0.0 4.091284400011888 0.0 28 2.174749849398573E-4 0.0 0.0 4.171677652777989 0.0 29 2.174749849398573E-4 0.0 0.0 4.260044988325218 0.0 30 2.174749849398573E-4 0.0 0.0 4.385745529620455 0.0 31 2.174749849398573E-4 0.0 0.0 4.486363955985962 0.0 32 2.174749849398573E-4 0.0 0.0 4.580965574434801 0.0 33 2.174749849398573E-4 0.0 0.0 4.684193700619586 0.0 34 2.174749849398573E-4 0.0 0.0 4.787856776774252 0.0 35 2.174749849398573E-4 0.0 0.0 4.903335993777316 0.0 36 2.174749849398573E-4 0.0 0.0 5.005694220022342 0.0 37 2.174749849398573E-4 0.0 0.0 5.111604537688052 0.0 38 2.174749849398573E-4 0.0 0.0 5.233318037592726 0.0 39 2.174749849398573E-4 0.0 0.0 5.388957635148017 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGTC 20 7.033777E-4 45.000004 38 GTCGTTA 20 7.033777E-4 45.000004 34 ATCGGAT 25 3.8912127E-5 45.000004 12 TCGCGAT 20 7.033777E-4 45.000004 13 CGTTTTT 15995 0.0 44.113785 1 GCGATAA 145 0.0 41.896553 9 CGACGGT 130 0.0 41.538464 28 AATAGCG 65 0.0 41.538464 1 ACGGGTA 230 0.0 41.08696 5 TGTAGCG 50 1.0822987E-9 40.500004 1 GACGGTC 135 0.0 40.000004 29 TTACGCG 45 1.9288564E-8 40.0 1 GGCGATA 450 0.0 39.500004 8 AGGGCGA 920 0.0 38.88587 6 TAGGGCG 475 0.0 38.842106 5 GGGCGAT 1805 0.0 38.64266 7 ATACGCG 35 6.249198E-6 38.57143 1 ACGGTCT 140 0.0 38.57143 30 GTTTTTT 18710 0.0 38.397915 2 CGAGGGT 445 0.0 37.92135 4 >>END_MODULE