SRR1546849_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546849_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1997773
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7698	0.38532906391266675	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5983	0.29948347484924465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	40	6.8193913E-9	45.000004	1
CGAACAA	20	7.034538E-4	45.000004	38
CGTATTA	20	7.034538E-4	45.000004	13
GCACGTC	30	2.166309E-6	45.000004	9
ATTCGAC	40	6.8193913E-9	45.000004	40
CGCGACA	30	2.166309E-6	45.000004	28
GCGTTCC	20	7.034538E-4	45.000004	45
TCGCTAA	20	7.034538E-4	45.000004	15
AATCTCG	60	0.0	45.000004	18
ACGTCGT	20	7.034538E-4	45.000004	37
ACGTCGA	20	7.034538E-4	45.000004	20
CTATTCG	20	7.034538E-4	45.000004	1
CGTAAGT	20	7.034538E-4	45.000004	32
ACCGTTG	20	7.034538E-4	45.000004	27
ACCCGGT	20	7.034538E-4	45.000004	20
TCGAACA	20	7.034538E-4	45.000004	34
ATCGATC	20	7.034538E-4	45.000004	33
ATCGAAC	20	7.034538E-4	45.000004	33
TGCGTAT	20	7.034538E-4	45.000004	13
CTTAACG	100	0.0	45.0	1