SRR1546845_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546845_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1381180
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15507	1.122735631851026	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1711	0.12387958122764592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAC	20	7.033781E-4	45.0	28
TACGACG	20	7.033781E-4	45.0	1
GTCGTTT	20	7.033781E-4	45.0	9
CGTTTTT	8270	0.0	43.612453	1
GTATGCG	70	0.0	41.785717	1
CGACGGT	195	0.0	40.384617	28
ATAACGG	45	1.9288564E-8	40.0	2
ATGGGAC	625	0.0	39.600002	5
CGTAAGG	200	0.0	39.375004	2
CGTATGG	135	0.0	38.333336	2
ATAACGC	100	0.0	38.250004	11
GTTTTTT	10045	0.0	37.89945	2
CTCACGA	215	0.0	37.67442	24
TATGCGG	275	0.0	37.636364	2
CGTGGTA	30	1.14004084E-4	37.500004	20
TTAGCCG	30	1.14004084E-4	37.500004	1
GGGACCG	600	0.0	37.500004	7
TACGACT	30	1.14004084E-4	37.500004	13
AATGTCG	30	1.14004084E-4	37.500004	15
TACCGTT	30	1.14004084E-4	37.500004	34