##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546838_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2130262 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.914566846707118 33.0 31.0 34.0 30.0 34.0 2 32.3264682935714 33.0 31.0 34.0 31.0 34.0 3 32.37513413842992 34.0 31.0 34.0 30.0 34.0 4 36.01147886973527 37.0 35.0 37.0 35.0 37.0 5 35.976118430502915 37.0 35.0 37.0 35.0 37.0 6 36.02177478638778 37.0 35.0 37.0 35.0 37.0 7 36.26624142945797 37.0 36.0 37.0 35.0 37.0 8 36.1439926168706 37.0 36.0 37.0 35.0 37.0 9 37.97120025611873 39.0 39.0 39.0 35.0 39.0 10 37.54467056164923 39.0 37.0 39.0 35.0 39.0 11 37.457449834809054 39.0 37.0 39.0 35.0 39.0 12 37.145155854068655 39.0 37.0 39.0 34.0 39.0 13 37.07890250119469 39.0 37.0 39.0 33.0 39.0 14 38.30040060800033 40.0 37.0 41.0 33.0 41.0 15 38.37901769829251 40.0 37.0 41.0 34.0 41.0 16 38.423487345687995 40.0 37.0 41.0 34.0 41.0 17 38.36373272395602 40.0 37.0 41.0 34.0 41.0 18 38.212062178267274 40.0 37.0 41.0 34.0 41.0 19 38.1071750798728 40.0 37.0 41.0 34.0 41.0 20 37.96311392683153 40.0 35.0 41.0 34.0 41.0 21 37.85311572003819 40.0 35.0 41.0 34.0 41.0 22 37.830292705779854 40.0 35.0 41.0 34.0 41.0 23 37.72376965838005 40.0 35.0 41.0 33.0 41.0 24 37.71645084031917 40.0 35.0 41.0 33.0 41.0 25 37.62684120544797 40.0 35.0 41.0 33.0 41.0 26 37.58655695872151 40.0 35.0 41.0 33.0 41.0 27 37.537504776407786 40.0 35.0 41.0 33.0 41.0 28 37.47088480196333 40.0 35.0 41.0 33.0 41.0 29 37.37597628836265 39.0 35.0 41.0 33.0 41.0 30 37.294419184119135 39.0 35.0 41.0 33.0 41.0 31 37.10436697457872 39.0 35.0 41.0 33.0 41.0 32 36.86994369706637 39.0 35.0 41.0 31.0 41.0 33 36.6544373415101 40.0 35.0 41.0 31.0 41.0 34 36.40164026772294 40.0 35.0 41.0 30.0 41.0 35 36.22897230481509 40.0 35.0 41.0 30.0 41.0 36 36.12435700397416 39.0 35.0 41.0 29.0 41.0 37 35.869233455790884 39.0 35.0 41.0 27.0 41.0 38 35.95602231087068 39.0 35.0 41.0 28.0 41.0 39 35.85782499992958 39.0 35.0 41.0 27.0 41.0 40 35.76652167667639 39.0 35.0 41.0 27.0 41.0 41 35.70213757744352 39.0 35.0 41.0 27.0 41.0 42 35.69605147160302 39.0 35.0 41.0 27.0 41.0 43 35.60482701188868 39.0 35.0 41.0 26.0 41.0 44 35.47804401524319 39.0 35.0 41.0 26.0 41.0 45 35.430553143228394 39.0 35.0 41.0 26.0 41.0 46 35.267031003698136 38.0 35.0 40.0 24.0 41.0 47 35.25508881067211 38.0 35.0 40.0 24.0 41.0 48 35.119255284091814 38.0 35.0 40.0 24.0 41.0 49 35.09404242295079 38.0 35.0 40.0 24.0 41.0 50 34.98304903340528 38.0 35.0 40.0 24.0 41.0 51 34.450886322903 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 5.0 13 2.0 14 18.0 15 50.0 16 91.0 17 270.0 18 624.0 19 1255.0 20 2234.0 21 3806.0 22 5811.0 23 8632.0 24 13533.0 25 22668.0 26 33274.0 27 38646.0 28 37774.0 29 36240.0 30 37719.0 31 42389.0 32 51486.0 33 67225.0 34 117702.0 35 214178.0 36 129089.0 37 171571.0 38 305904.0 39 787813.0 40 249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.21641281682723 22.262519821505524 27.51614590130228 18.00492146036497 2 34.28747262073867 24.010567714206047 28.961038595252603 12.740921069802683 3 27.92252783929864 24.584346901930374 34.64193606232473 12.851189196446258 4 25.237599882080232 26.223957428710648 34.29657948177267 14.241863207436456 5 22.807664033813683 30.77879622318757 32.69452302111196 13.719016721886792 6 20.146864564077095 38.98140228760594 30.150469754424574 10.721263393892395 7 84.2724040517082 3.779112616194628 10.168561425777673 1.7799219063195044 8 84.80919248430475 3.0773679481678777 10.065522456862114 2.047917110665261 9 79.51838787904963 4.39917719041132 12.80781425007816 3.274620680460901 10 35.342694936115834 22.77743301058743 28.800541905174104 13.079330148122626 11 32.123842043842494 23.676195697993958 27.45225704631637 16.74770521184718 12 29.285646554273605 23.449040540553227 29.89078338720777 17.374529517965396 13 23.41068845052862 27.807236856311572 31.025338667262524 17.756736025897286 14 18.932976319344757 30.523475516157166 32.79399435374616 17.749553810751916 15 18.262072928118698 25.333832176511624 39.72793017948027 16.676164715889406 16 20.907146632667718 22.941309566616688 38.21689538657686 17.934648414138728 17 21.379389014121266 22.8278024017703 32.01254118038063 23.7802674037278 18 22.561966556226416 24.208524585238813 33.658301185487986 19.57120767304679 19 24.504966994670138 25.88662802979164 30.47873923489223 19.129665740645986 20 25.515499971365024 25.77748652513165 29.739816041407114 18.967197462096212 21 23.519970782936557 26.267332375078745 31.79852994608175 18.414166895902945 22 22.42940070282435 23.578367355752487 32.34142091442273 21.650811027000437 23 20.07889170440068 27.053151208630677 32.03746769176749 20.830489395201155 24 20.307032656077045 25.616802064722556 35.2382476897208 18.837917589479606 25 20.129777463992692 26.71812199626149 33.07372520375428 20.078375335991534 26 19.449391671071446 29.088112166484688 31.051485685798276 20.411010476645597 27 20.015894758485107 27.389635641061993 32.380946569013574 20.213523031439326 28 18.341499777961584 27.20416549701398 35.414798743065404 19.039535981959027 29 19.27331004355333 25.639897815386085 35.06033530147935 20.026456839581236 30 20.60474251523991 26.095851120660274 32.97815010547998 20.321256258619833 31 23.73970901231867 25.20117243794425 30.503008550122 20.55610999961507 32 24.047934009995014 26.53743999564373 30.032503044226484 19.38212295013477 33 23.313329534113645 26.345585660355393 29.764836437959275 20.57624836757169 34 20.14371941103958 27.153796105831113 32.161959420953856 20.54052506217545 35 20.939020646286703 27.229890032305885 31.03097177718046 20.800117544226953 36 23.097487539091436 27.6620434481768 29.79211007847861 19.448358934253157 37 21.30127655659257 29.128107246902026 29.642973493401282 19.927642703104127 38 20.976762482736866 30.20731722201307 28.288773869129713 20.527146426120353 39 21.090410475331204 28.75190938954927 28.5714151592621 21.586264975857432 40 21.909042174155104 27.450003802349194 29.236309899909024 21.404644123586678 41 19.675701862024482 26.83698061552992 29.384366805585415 24.10295071686018 42 21.594573812986383 27.8132455068907 28.2808875152446 22.31129316487831 43 21.37488252618692 28.120015284504913 28.590943273644275 21.914158915663894 44 21.161387660297184 28.566861728745103 29.267432832205614 21.004317778752096 45 20.738716646121464 29.644522598628715 27.963180115873072 21.653580639376752 46 21.98818736850209 28.97047405436514 28.679007558694657 20.362331018438105 47 21.32296402977662 27.7267772696504 29.69526753047278 21.254991170100205 48 21.637714046441236 26.555982315790267 29.994948978106915 21.811354659661582 49 21.30470336512598 25.877333398427048 30.682892526834728 22.135070709612243 50 19.933698296265906 27.967921316720666 30.338944223762148 21.75943616325128 51 19.790007050775916 28.875086726421443 29.208050465154052 22.12685575764859 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1508.0 1 2236.0 2 2964.0 3 21481.5 4 39999.0 5 27680.0 6 15361.0 7 15395.0 8 15429.0 9 15726.5 10 16024.0 11 15604.0 12 15184.0 13 14590.5 14 13997.0 15 13330.5 16 12664.0 17 12165.5 18 11667.0 19 11374.0 20 11081.0 21 11222.5 22 11364.0 23 12457.0 24 13550.0 25 15231.0 26 19152.5 27 21393.0 28 25957.5 29 30522.0 30 36612.5 31 42703.0 32 48342.0 33 53981.0 34 58654.0 35 63327.0 36 71651.5 37 79976.0 38 87377.0 39 94778.0 40 110717.0 41 126656.0 42 139076.5 43 151497.0 44 156778.0 45 162059.0 46 166318.5 47 170578.0 48 171274.0 49 171970.0 50 163980.5 51 155991.0 52 146557.0 53 137123.0 54 122146.0 55 107169.0 56 100186.5 57 93204.0 58 85104.0 59 77004.0 60 69463.5 61 61923.0 62 54369.5 63 46816.0 64 39535.5 65 32255.0 66 25617.5 67 18980.0 68 16252.5 69 13525.0 70 10397.0 71 7269.0 72 6381.0 73 5493.0 74 4417.0 75 2460.0 76 1579.0 77 1237.0 78 895.0 79 608.5 80 322.0 81 221.0 82 120.0 83 80.0 84 40.0 85 30.0 86 20.0 87 23.0 88 26.0 89 21.0 90 16.0 91 10.0 92 4.0 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2130262.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.311979539550272 #Duplication Level Percentage of deduplicated Percentage of total 1 78.73003377779162 18.353529365759798 2 5.788626788950592 2.6988869853221757 3 2.2830790958206655 1.5966927950683885 4 1.3043573780560498 1.2162861003801628 5 0.9199592926784042 1.0723036104069046 6 0.70619910269413 0.9877739419712591 7 0.5913006317408159 0.9649071760205534 8 0.48449321820550845 0.9035596791886141 9 0.4452794559303509 0.9342311009427376 >10 6.9847761258998275 40.49179265564271 >50 1.6407049129942735 25.388731182423264 >100 0.11769830844122434 3.695817215942867 >500 0.0028756912442491076 0.4556672397451136 >1k 4.108130348927296E-4 0.1704203138138776 >5k 0.0 0.0 >10k+ 2.054065174463648E-4 1.0694006373715448 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22333 1.0483686983103486 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2471 0.11599512172681106 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.028353319920272717 0.0 2 0.0 0.0 0.0 0.10177151918402526 0.0 3 0.0 0.0 0.0 0.17242010607145974 0.0 4 0.0 0.0 0.0 0.26316011833286235 0.0 5 0.0 0.0 0.0 0.4885314576329109 0.0 6 0.0 0.0 0.0 0.8833185777148539 0.0 7 0.0 0.0 0.0 1.167368145326725 0.0 8 0.0 0.0 0.0 1.7970559489865565 0.0 9 0.0 0.0 0.0 2.134526175653511 0.0 10 0.0 0.0 0.0 2.5659754527846808 0.0 11 0.0 0.0 0.0 2.8257557051667823 0.0 12 0.0 0.0 0.0 3.0719695511631904 0.0 13 0.0 0.0 0.0 3.193034471816143 0.0 14 0.0 0.0 0.0 3.2473939825242155 0.0 15 0.0 0.0 0.0 3.305555842426894 0.0 16 4.694258264945814E-5 0.0 0.0 3.408219270681259 0.0 17 4.694258264945814E-5 0.0 0.0 3.5182526844115887 0.0 18 4.694258264945814E-5 0.0 0.0 3.6909544459789454 0.0 19 4.694258264945814E-5 0.0 0.0 3.772493712041054 0.0 20 4.694258264945814E-5 0.0 0.0 3.870603709778422 0.0 21 4.694258264945814E-5 0.0 0.0 3.9798390996037107 0.0 22 4.694258264945814E-5 0.0 0.0 4.10381446038093 0.0 23 4.694258264945814E-5 0.0 0.0 4.23717833768804 0.0 24 4.694258264945814E-5 0.0 0.0 4.348854741811101 0.0 25 4.694258264945814E-5 0.0 0.0 4.450673203577776 0.0 26 4.694258264945814E-5 0.0 0.0 4.550238421377276 0.0 27 4.694258264945814E-5 0.0 0.0 4.648113706201396 0.0 28 4.694258264945814E-5 0.0 0.0 4.752514010013792 0.0 29 4.694258264945814E-5 0.0 0.0 4.869494925976241 0.0 30 4.694258264945814E-5 0.0 0.0 5.031259065786275 0.0 31 4.694258264945814E-5 0.0 0.0 5.154342517493154 0.0 32 4.694258264945814E-5 0.0 0.0 5.283575447527111 0.0 33 4.694258264945814E-5 0.0 0.0 5.401823813221097 0.0 34 4.694258264945814E-5 0.0 0.0 5.526597197903357 0.0 35 4.694258264945814E-5 0.0 0.0 5.65972636229722 0.0 36 4.694258264945814E-5 0.0 0.0 5.7881143258434875 0.0 37 4.694258264945814E-5 0.0 0.0 5.91091612205447 0.0 38 4.694258264945814E-5 0.0 0.0 6.060616018123592 0.0 39 4.694258264945814E-5 0.0 0.0 6.263971286161045 4.694258264945814E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.0346444E-4 45.0 28 CGTTTTT 15160 0.0 43.649406 1 CGGTCTA 190 0.0 40.26316 31 TATAGCG 90 0.0 40.000004 1 TATCGCG 40 3.4600816E-7 39.375 1 TACGGGT 545 0.0 38.80734 4 CTATACG 65 9.094947E-12 38.07692 1 ATAGCGG 355 0.0 38.02817 2 ACGGGTA 405 0.0 37.77778 5 ACGGGTG 800 0.0 37.40625 5 TTTAGCG 115 0.0 37.173916 1 CGAGGGT 765 0.0 37.058823 4 GTTTTTT 18410 0.0 37.05595 2 TCACGAC 195 0.0 36.923077 25 CGACGGT 195 0.0 36.923077 28 TAGGGTA 1960 0.0 36.390305 5 ACGGGTC 490 0.0 36.27551 5 ACGGTCT 205 0.0 36.219513 30 ATAGGGT 2025 0.0 36.11111 4 TTACGGG 580 0.0 36.077587 3 >>END_MODULE