SRR1546834_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546834_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3187204
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10414	0.32674406784128035	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10080	0.31626466332246067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGT	20	7.0351706E-4	45.000004	18
ACCGGTA	80	0.0	45.000004	41
CGAACCG	20	7.0351706E-4	45.000004	16
TCCGATT	55	1.8189894E-12	45.000004	38
CACGCTA	40	6.8212103E-9	45.000004	37
TATGCGT	40	6.8212103E-9	45.000004	20
CCGTAGA	20	7.0351706E-4	45.000004	32
TGCTCGA	20	7.0351706E-4	45.000004	18
CTTACGC	20	7.0351706E-4	45.000004	33
GTCGACG	35	1.2128294E-7	45.0	1
TTTACGT	45	3.8562575E-10	45.0	32
ATTACGA	25	3.892368E-5	45.0	40
CTAACCG	35	1.2128294E-7	45.0	1
CGTAGGT	25	3.892368E-5	45.0	3
TAACACG	25	3.892368E-5	45.0	31
GATATCG	25	3.892368E-5	45.0	11
GTTCACG	45	3.8562575E-10	45.0	1
CCGAATA	35	1.2128294E-7	45.0	36
ACCGTAG	35	1.2128294E-7	45.0	42
CACGTTA	35	1.2128294E-7	45.0	27