##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546833_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2348376 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.94144251176132 33.0 31.0 34.0 30.0 34.0 2 32.334791362200946 34.0 31.0 34.0 31.0 34.0 3 32.37709804562813 34.0 31.0 34.0 30.0 34.0 4 35.995662960275524 37.0 35.0 37.0 35.0 37.0 5 35.95740545806974 37.0 35.0 37.0 35.0 37.0 6 36.013763554047564 37.0 35.0 37.0 35.0 37.0 7 36.23747389685468 37.0 35.0 37.0 35.0 37.0 8 36.09690313646537 37.0 35.0 37.0 35.0 37.0 9 37.88479655728044 39.0 38.0 39.0 35.0 39.0 10 37.64807296616896 39.0 37.0 39.0 35.0 39.0 11 37.4546601566359 39.0 37.0 39.0 35.0 39.0 12 36.963285266073235 39.0 35.0 39.0 33.0 39.0 13 36.840249176452154 39.0 35.0 39.0 33.0 39.0 14 38.03646988386868 40.0 36.0 41.0 33.0 41.0 15 38.138781864573644 40.0 36.0 41.0 33.0 41.0 16 38.190652178356444 40.0 36.0 41.0 34.0 41.0 17 38.13617921491277 40.0 36.0 41.0 34.0 41.0 18 37.992787781854354 40.0 36.0 41.0 34.0 41.0 19 37.90860109284033 40.0 36.0 41.0 34.0 41.0 20 37.76579091252849 40.0 35.0 41.0 34.0 41.0 21 37.63880060092592 40.0 35.0 41.0 33.0 41.0 22 37.59874440890215 40.0 35.0 41.0 33.0 41.0 23 37.526535358903345 39.0 35.0 41.0 33.0 41.0 24 37.49607941828736 39.0 35.0 41.0 33.0 41.0 25 37.389920949626465 39.0 35.0 41.0 33.0 41.0 26 37.35101576578878 39.0 35.0 41.0 33.0 41.0 27 37.27987042960753 39.0 35.0 41.0 33.0 41.0 28 37.20271924087114 39.0 35.0 41.0 33.0 41.0 29 37.09335344936245 39.0 35.0 41.0 33.0 41.0 30 37.030922646118 39.0 35.0 41.0 33.0 41.0 31 36.820838315499735 39.0 35.0 41.0 32.0 41.0 32 36.62762905088453 39.0 35.0 41.0 31.0 41.0 33 36.452660902683384 39.0 35.0 41.0 31.0 41.0 34 36.239699690339194 39.0 35.0 41.0 30.0 41.0 35 36.07709497967957 39.0 35.0 41.0 30.0 41.0 36 35.98961665423254 39.0 35.0 41.0 30.0 41.0 37 35.72766243565766 39.0 35.0 41.0 28.0 41.0 38 35.80995547561378 39.0 35.0 41.0 29.0 41.0 39 35.70952011091921 38.0 35.0 41.0 28.0 41.0 40 35.61442460662177 38.0 35.0 41.0 28.0 41.0 41 35.53703282608918 38.0 35.0 41.0 27.0 41.0 42 35.52137988124559 38.0 35.0 41.0 28.0 41.0 43 35.393978221545446 38.0 35.0 41.0 27.0 41.0 44 35.256610099915854 38.0 35.0 40.0 27.0 41.0 45 35.2139661621478 38.0 35.0 40.0 27.0 41.0 46 35.04351688145339 37.0 35.0 40.0 26.0 41.0 47 35.01915877184914 37.0 35.0 40.0 26.0 41.0 48 34.88190306833318 37.0 34.0 40.0 25.0 41.0 49 34.851114131638205 37.0 34.0 40.0 26.0 41.0 50 34.73543972515475 37.0 34.0 40.0 26.0 41.0 51 34.18819516125186 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 7.0 11 10.0 12 8.0 13 22.0 14 38.0 15 58.0 16 120.0 17 323.0 18 765.0 19 1543.0 20 2746.0 21 4444.0 22 6858.0 23 10064.0 24 15019.0 25 23890.0 26 33649.0 27 39412.0 28 40012.0 29 40199.0 30 43002.0 31 49454.0 32 60496.0 33 80438.0 34 150473.0 35 291458.0 36 151003.0 37 199030.0 38 329569.0 39 773901.0 40 361.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.30421704190471 22.699601767349012 26.620183479987876 16.375997710758412 2 34.312605817807714 23.964603623951188 28.55462668669753 13.16816387154357 3 29.281895233131323 24.026646499538405 32.89192190688374 13.799536360446538 4 26.39130190395405 26.164464293622487 32.45089372400331 14.99334007842015 5 22.72016917222796 30.712458311616196 31.39250273380413 15.174869782351719 6 21.16415769876715 39.638882359554 28.648606526382487 10.548353415296358 7 82.7580847360048 4.91228832180196 9.779694563391892 2.5499323788013504 8 83.15069648131305 4.244124450258392 9.864817218367076 2.7403618500614892 9 78.00356501684568 5.950111907122198 11.974360153569956 4.071962922462161 10 42.95683485097786 26.61311476526757 17.709004009579385 12.721046374175174 11 35.610779534452746 23.61632038481061 25.300803619181938 15.472096461554708 12 31.71481057547854 22.017130135889655 29.69571312260047 16.572346166031334 13 23.733422586502332 28.921986939059163 30.237534364173367 17.107056110265138 14 18.1813304172756 32.47090755483789 32.049978368029656 17.297783659856854 15 17.291055606086932 23.791803356873004 41.67437412066892 17.242766916371146 16 19.956514629684513 21.615831536346818 39.43078110149312 18.996872732475552 17 21.23033108837767 21.123959706622788 30.61600868004102 27.02970052495852 18 23.731293455562483 22.985118226382827 32.623566243225106 20.660022074829584 19 26.395602748452546 24.819109035350387 28.774097503977213 20.011190712219847 20 27.786265913124648 24.458263923664695 27.544354055738946 20.211116107471717 21 24.89971793273309 25.4130514023308 30.05327937263879 19.633951292297315 22 23.549593421155727 23.267951980432436 29.97944111164481 23.203013486767023 23 21.695673946591178 26.344886849465333 29.314726432223804 22.644712771719693 24 21.990345668666347 24.14724047597148 33.46278449447618 20.39962936088599 25 20.96844798277618 25.63839862100447 32.0280057367304 21.36514765948894 26 19.811946638868733 28.48244914783663 29.776236854745576 21.929367358549058 27 20.03256718685594 27.136369985044983 31.6036699404184 21.227392887680676 28 19.306916779936433 25.882269278854835 35.29898959962118 19.51182434158755 29 20.14583695285593 25.184340156772166 34.318652549676884 20.351170340695017 30 21.579806640844566 25.7469842989368 32.569358569496536 20.1038504907221 31 26.126650928130758 24.59244175549401 28.39460120525844 20.886306111116788 32 26.021855103271367 26.397093140110446 28.351720508129873 19.229331248488318 33 25.51976344503606 25.585894252027785 28.148303338136653 20.746038964799503 34 21.53364708206863 27.058273462171307 29.685195215757616 21.72288424000245 35 21.32784528542278 26.870271200182593 30.233914841575626 21.567968672819006 36 25.768573686666873 25.94567479824355 27.889954589895318 20.39579692519426 37 22.531443005719698 28.897672263726083 28.1292689075344 20.441615823019823 38 21.74498461915809 29.592237358923786 26.471442392529987 22.19133562938814 39 21.840838094070115 27.664905449553224 27.963665103032902 22.530591353343755 40 22.62589125421142 25.622685634668386 28.08268352257049 23.668739588549702 41 20.29938987623788 25.08989190828045 28.64694580424941 25.963772411232274 42 23.03970914368057 26.616308461677345 26.51594122917284 23.828041165469244 43 22.43141643416557 26.437333714873596 27.67997969660736 23.451270154353477 44 21.678129907646817 28.098950082950942 28.071058467638917 22.151861541763328 45 20.800331803765665 29.769508800975654 27.02399445403973 22.406164941218954 46 22.975111310965534 28.213923153702815 28.26915281028251 20.54181272504914 47 22.26670686465881 27.149655762109642 28.693318276119328 21.89031909711222 48 22.76811720099337 25.311449273881188 29.823460978991438 22.09697254613401 49 22.129377919038518 24.329792162754178 30.210579566474877 23.33025035173243 50 20.617183960319814 27.777621641508855 29.125787352621558 22.479407045549777 51 20.676927374491992 28.96018354812006 27.85209864178479 22.510790435603155 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1799.0 1 2989.0 2 4179.0 3 22365.5 4 40552.0 5 27363.5 6 14175.0 7 14222.5 8 14270.0 9 14669.5 10 15069.0 11 14903.0 12 14737.0 13 14260.0 14 13783.0 15 13072.0 16 12361.0 17 11760.0 18 11159.0 19 11472.0 20 11785.0 21 11947.0 22 12109.0 23 12858.5 24 13608.0 25 14604.0 26 17733.5 27 19867.0 28 23216.0 29 26565.0 30 31910.5 31 37256.0 32 42838.0 33 48420.0 34 55618.5 35 62817.0 36 66337.0 37 69857.0 38 79978.5 39 90100.0 40 108310.5 41 126521.0 42 145020.5 43 163520.0 44 168819.5 45 174119.0 46 177396.5 47 180674.0 48 179358.0 49 178042.0 50 174719.0 51 171396.0 52 159277.5 53 147159.0 54 134138.0 55 121117.0 56 116530.0 57 111943.0 58 105863.5 59 99784.0 60 93970.5 61 88157.0 62 80829.5 63 73502.0 64 66058.5 65 58615.0 66 48084.0 67 37553.0 68 31019.0 69 24485.0 70 20286.5 71 16088.0 72 13601.5 73 11115.0 74 9087.0 75 5520.5 76 3982.0 77 2774.5 78 1567.0 79 1312.0 80 1057.0 81 748.5 82 440.0 83 359.0 84 278.0 85 169.5 86 61.0 87 51.5 88 42.0 89 26.5 90 11.0 91 11.5 92 12.0 93 8.0 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2348376.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.06545847798084 #Duplication Level Percentage of deduplicated Percentage of total 1 80.60888147368128 17.786719271139933 2 6.142450302826634 2.7107196422016386 3 2.0352633698209113 1.3472705813561603 4 1.1931625148081169 1.053107117119268 5 0.7644146034183251 0.8433579345844622 6 0.5663381941984742 0.749790714514865 7 0.440040124152626 0.6796780961694713 8 0.3675735935017198 0.6488543892011525 9 0.3221862264278179 0.6398268121278315 >10 5.086114862870555 28.738558577545188 >50 2.0946974544155186 32.25480680871186 >100 0.37336634836644933 10.468319875817132 >500 0.004133198633725818 0.6206005653780563 >1k 0.0011809138953502336 0.39754916553329095 >5k 0.0 0.0 >10k+ 1.9681898255837226E-4 1.0608404485997047 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24427 1.0401656293540726 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3237 0.13783993704585637 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.258261879698992E-5 0.0 0.0 0.033512520993231064 0.0 2 4.258261879698992E-5 0.0 0.0 0.11050189577818884 0.0 3 4.258261879698992E-5 0.0 0.0 0.18229619106991385 0.0 4 4.258261879698992E-5 0.0 0.0 0.25788033943457095 0.0 5 4.258261879698992E-5 0.0 0.0 0.45039635901576236 0.0 6 4.258261879698992E-5 0.0 0.0 0.7492837603518346 0.0 7 4.258261879698992E-5 0.0 0.0 0.9513808691623488 0.0 8 4.258261879698992E-5 0.0 0.0 1.4167237273758546 0.0 9 4.258261879698992E-5 0.0 0.0 1.6963212023968905 0.0 10 4.258261879698992E-5 0.0 0.0 2.101196741918671 0.0 11 4.258261879698992E-5 0.0 0.0 2.386372540002112 0.0 12 4.258261879698992E-5 0.0 0.0 2.652939733671269 0.0 13 4.258261879698992E-5 0.0 0.0 2.7695309439374274 0.0 14 4.258261879698992E-5 0.0 0.0 2.829402105965995 0.0 15 8.516523759397984E-5 0.0 0.0 2.8906784944148636 0.0 16 1.2774785639096977E-4 0.0 0.0 3.008078774438165 0.0 17 1.2774785639096977E-4 0.0 0.0 3.135400804641165 0.0 18 1.2774785639096977E-4 0.0 0.0 3.3383495658276185 0.0 19 1.2774785639096977E-4 0.0 0.0 3.4290079612464104 0.0 20 1.2774785639096977E-4 0.0 0.0 3.531887568259938 0.0 21 1.2774785639096977E-4 0.0 0.0 3.6531202839749684 0.0 22 1.2774785639096977E-4 0.0 0.0 3.7813365491727047 0.0 23 1.2774785639096977E-4 0.0 0.0 3.9150033895764564 0.0 24 1.2774785639096977E-4 0.0 0.0 4.026314355111788 0.0 25 1.2774785639096977E-4 0.0 0.0 4.115695271966669 0.0 26 1.2774785639096977E-4 0.0 0.0 4.212059738304258 0.0 27 1.2774785639096977E-4 0.0 0.0 4.318771781009515 0.0 28 1.2774785639096977E-4 0.0 0.0 4.421310727072666 0.0 29 1.2774785639096977E-4 0.0 0.0 4.536070884730554 0.0 30 1.2774785639096977E-4 0.0 0.0 4.693371078566635 0.0 31 1.7033047518795968E-4 0.0 0.0 4.818947221398958 0.0 32 1.7033047518795968E-4 0.0 0.0 4.942649729004214 0.0 33 1.7033047518795968E-4 0.0 0.0 5.063925027338041 0.0 34 1.7033047518795968E-4 0.0 0.0 5.19282261443653 0.0 35 1.7033047518795968E-4 0.0 0.0 5.33994556238013 0.0 36 2.129130939849496E-4 0.0 0.0 5.463775817841777 0.0 37 2.129130939849496E-4 0.0 0.0 5.598422058477858 0.0 38 2.129130939849496E-4 0.0 0.0 5.736815569568076 0.0 39 2.129130939849496E-4 0.0 0.0 5.914981246614682 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13620 0.0 42.80286 1 TATAGCG 160 0.0 40.781254 1 ATACGAC 35 6.2510753E-6 38.571426 1 CGAAGTA 35 6.2510753E-6 38.571426 30 TACGTAG 100 0.0 38.250004 1 CGGTCTA 315 0.0 37.857143 31 GGGCGAT 3295 0.0 37.830048 7 GACCGAT 720 0.0 37.8125 9 AGGGCGA 1825 0.0 37.23288 6 TATCGCG 85 0.0 37.058823 1 GTTTTTT 16570 0.0 37.056427 2 GGCGATT 1010 0.0 36.980198 8 TAAGGGA 1845 0.0 36.707317 4 AGGGATC 1470 0.0 36.428574 6 TAGGGAC 1600 0.0 36.42188 5 AAGGGAT 1930 0.0 36.37306 5 TAGGGAT 2080 0.0 36.129807 5 GCGAACC 25 0.0021075548 36.000004 13 TATCGCC 25 0.0021075548 36.000004 21 AGGGATT 2325 0.0 35.806454 6 >>END_MODULE