SRR1546831_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546831_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2202022
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8072	0.3665721777529925	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4478	0.20335854955127608	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2923	0.13274163473389458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	45	3.8562575E-10	45.0	1
AAATCGT	20	7.034698E-4	45.0	36
TCCGATT	25	3.8919745E-5	45.0	29
ATTCGCA	20	7.034698E-4	45.0	17
ACGATAT	25	3.8919745E-5	45.0	24
ACCTAGT	40	6.8193913E-9	45.0	35
TCGTGAC	35	1.2126111E-7	45.0	17
CGGATAT	35	1.2126111E-7	45.0	12
TCGCTTA	20	7.034698E-4	45.0	41
TCGCTGA	40	6.8193913E-9	45.0	42
ACGTCCA	20	7.034698E-4	45.0	21
TCGACCC	20	7.034698E-4	45.0	17
CAATACG	25	3.8919745E-5	45.0	1
TACGTCA	35	1.2126111E-7	45.0	32
AGTCGAT	20	7.034698E-4	45.0	30
GTACGAT	20	7.034698E-4	45.0	27
ATCGTTC	30	2.166411E-6	44.999996	32
CGTAAAT	30	2.166411E-6	44.999996	18
ATACCGG	60	0.0	44.999996	2
TACCGGG	250	0.0	43.2	3