##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546831_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2202022 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.988107748242296 33.0 31.0 34.0 30.0 34.0 2 32.37717243515278 34.0 31.0 34.0 31.0 34.0 3 32.443612734114375 34.0 31.0 34.0 31.0 34.0 4 36.022248642384135 37.0 35.0 37.0 35.0 37.0 5 35.971224174872006 37.0 35.0 37.0 35.0 37.0 6 36.03454870114831 37.0 35.0 37.0 35.0 37.0 7 36.26439427035697 37.0 36.0 37.0 35.0 37.0 8 36.14181874658836 37.0 36.0 37.0 35.0 37.0 9 37.979053796919374 39.0 39.0 39.0 35.0 39.0 10 37.70395709034696 39.0 38.0 39.0 35.0 39.0 11 37.438807605010304 39.0 37.0 39.0 35.0 39.0 12 36.574130957819676 39.0 35.0 39.0 33.0 39.0 13 36.29689803280803 39.0 35.0 39.0 33.0 39.0 14 37.35903773895084 40.0 35.0 41.0 33.0 41.0 15 37.55181101732862 40.0 35.0 41.0 33.0 41.0 16 37.672031887056534 40.0 35.0 41.0 34.0 41.0 17 37.61756240400868 39.0 35.0 41.0 34.0 41.0 18 37.5752989752146 39.0 35.0 41.0 34.0 41.0 19 37.53633251620556 39.0 35.0 41.0 34.0 41.0 20 37.41011579357518 39.0 35.0 41.0 34.0 41.0 21 37.25165325323725 39.0 35.0 41.0 33.0 41.0 22 37.208129164922056 39.0 35.0 41.0 33.0 41.0 23 37.1615501570829 38.0 35.0 41.0 33.0 41.0 24 37.13777927740958 38.0 35.0 41.0 33.0 41.0 25 37.026290382203264 38.0 35.0 41.0 33.0 41.0 26 36.953824712014686 38.0 35.0 41.0 33.0 41.0 27 36.89741973513434 38.0 35.0 41.0 33.0 41.0 28 36.88539351559612 38.0 35.0 41.0 33.0 41.0 29 36.85267903772078 38.0 35.0 41.0 33.0 41.0 30 36.850822562172404 38.0 35.0 41.0 33.0 41.0 31 36.67039657187803 38.0 35.0 41.0 32.0 41.0 32 36.519765470099756 38.0 35.0 41.0 32.0 41.0 33 36.445018260489675 38.0 35.0 41.0 32.0 41.0 34 36.34604876790513 38.0 35.0 41.0 32.0 41.0 35 36.24466921765541 38.0 35.0 41.0 31.0 41.0 36 36.14163982012895 38.0 35.0 41.0 31.0 41.0 37 35.86583376551188 38.0 35.0 41.0 30.0 41.0 38 35.96554348684981 38.0 35.0 41.0 31.0 41.0 39 35.921668357536845 37.0 35.0 41.0 31.0 41.0 40 35.79239489887022 37.0 35.0 40.0 30.0 41.0 41 35.76973981186382 37.0 35.0 40.0 30.0 41.0 42 35.76291199633791 37.0 35.0 40.0 30.0 41.0 43 35.64600898628624 37.0 35.0 40.0 30.0 41.0 44 35.53618764935137 37.0 35.0 40.0 30.0 41.0 45 35.484068279063514 36.0 35.0 40.0 30.0 41.0 46 35.34480127809804 36.0 35.0 40.0 30.0 41.0 47 35.33076372533971 36.0 35.0 40.0 30.0 41.0 48 35.212590973205536 36.0 35.0 40.0 29.0 41.0 49 35.21541564979823 36.0 35.0 40.0 29.0 41.0 50 35.08690694280075 35.0 34.0 40.0 29.0 41.0 51 34.54553769217564 35.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 6.0 12 3.0 13 9.0 14 13.0 15 43.0 16 114.0 17 227.0 18 570.0 19 1144.0 20 2174.0 21 3455.0 22 5308.0 23 8129.0 24 11482.0 25 17024.0 26 23294.0 27 28347.0 28 30355.0 29 33007.0 30 38004.0 31 46088.0 32 59568.0 33 81929.0 34 171438.0 35 423052.0 36 125310.0 37 159309.0 38 268389.0 39 663783.0 40 445.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.73518611530675 24.57032672698093 29.08168038284813 13.612806774864191 2 29.448752101477645 25.99787831365899 31.27493730762 13.278432277243372 3 28.83381728247947 25.318911436852133 32.18650858165813 13.660762699010274 4 26.864127606354522 27.309445591370114 30.690020354020074 15.136406448255284 5 23.092775639843744 32.51384409420069 29.324003120768094 15.069377145187469 6 20.810555026244064 41.054085744829074 26.84446386094235 11.290895367984517 7 86.45463124346622 5.056806880221905 6.3611535216269415 2.1274083546849214 8 87.69980499740693 4.039923306851612 5.931321303783522 2.3289503919579366 9 83.58145377294142 5.462025356694893 7.647107976214588 3.3094128941491046 10 53.52889299016994 23.14781596187504 12.211867093062649 11.111423954892368 11 46.829641120751745 20.148663364852847 19.422421756004255 13.599273758391151 12 41.49676978704118 21.285709225430082 22.517486201318608 14.700034786210129 13 21.93524860332912 39.744607456237944 23.335461680219364 14.984682260213567 14 15.805291681917803 42.195264170839344 26.433659609213713 15.56578453802914 15 15.018060673326605 22.8446854754403 47.45311354745775 14.684140303775347 16 16.376721031851634 18.50194957180264 45.78968784144754 19.33164155489818 17 17.06150074794893 18.684009514891315 28.75139303785339 35.50309669930636 18 22.925701923050724 22.692688810556845 32.48473448494157 21.89687478145087 19 29.240307317547238 25.042983221784343 24.692623416114827 21.0240860445536 20 31.671527350771246 23.65335132891497 23.36284560281414 21.31227571749964 21 23.594814220748024 27.538099074396165 26.558363177116306 22.308723527739506 22 22.93551108935333 24.498756143217463 25.561733715648614 27.003999051780593 23 19.94298876214679 30.27358491422883 24.373462208824435 25.409964114799944 24 21.68311669910655 24.325506284678355 35.380709184558555 18.610667831656542 25 19.01416062146518 25.644793739572087 33.22310131324755 22.117944325715182 26 17.62566404876972 33.28518062035711 26.97221008691103 22.116945243962142 27 19.40852543707556 30.484527402541843 29.719639494973254 20.387307665409338 28 16.295341281785557 27.18269844715448 39.12613043829716 17.395829832762796 29 16.735618445228976 24.81051506297394 36.69840719120881 21.755459300588278 30 19.35693648837296 28.325602559829104 31.370622091877376 20.946838859920565 31 29.605471698284575 25.43884666002429 23.134464596629826 21.82121704506131 32 29.32977054725157 27.09600539867449 25.616637799259045 17.957586254814892 33 26.488518280017182 27.32633915555794 25.237395448365184 20.947747116059695 34 19.676279346891175 28.265930131488243 28.307210373011714 23.75058014860887 35 20.5442089134441 25.366504058542557 30.631891961115738 23.457395066897607 36 29.39180444155417 24.22818663937054 26.823710208163227 19.556298710912063 37 21.248788613374433 30.487933363063586 28.056940393874356 20.206337629687624 38 21.68179972770481 32.32342819463202 22.78319653482118 23.211575542841988 39 21.52303655458483 29.29825405922375 26.329164740406775 22.849544645784647 40 23.406941438368918 26.314859706215472 24.620825768316575 25.65737308709904 41 17.95254543324272 24.771732525833077 26.541424200121526 30.734297840802682 42 23.23201130597242 26.819759293958008 23.236915889123726 26.71131351094585 43 23.19018611076547 27.229155748670998 24.732041732553082 24.848616408010457 44 21.261595024936174 31.359495954173028 26.182299722709402 21.1966092981814 45 18.55971466225133 35.101329596162074 23.746720060017566 22.592235681569033 46 23.925964409074933 30.005195225115827 25.93298341251813 20.13585695329111 47 23.503625304379337 26.627345230883254 26.842738174278004 23.026291290459405 48 24.29626043699836 23.212256734946337 29.33222283882722 23.159259989228083 49 21.281485834383126 23.066299973388098 30.79206293125137 24.86015126097741 50 19.270833806383404 30.67571531982878 27.707897559606582 22.345553314181238 51 20.339215502842386 32.80235165679544 23.63968207402106 23.218750766341117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1616.0 1 2576.5 2 3537.0 3 9019.0 4 14501.0 5 10624.0 6 6747.0 7 7109.0 8 7471.0 9 7902.5 10 8334.0 11 8291.0 12 8248.0 13 8040.0 14 7832.0 15 7103.5 16 6375.0 17 6128.5 18 5882.0 19 6032.5 20 6183.0 21 6262.0 22 6341.0 23 6563.0 24 6785.0 25 9104.0 26 12594.5 27 13766.0 28 18414.5 29 23063.0 30 27073.0 31 31083.0 32 32332.5 33 33582.0 34 38543.0 35 43504.0 36 48345.5 37 53187.0 38 64661.5 39 76136.0 40 113381.5 41 150627.0 42 179121.5 43 207616.0 44 214862.5 45 222109.0 46 212752.5 47 203396.0 48 195555.0 49 187714.0 50 182591.0 51 177468.0 52 160864.0 53 144260.0 54 129601.0 55 114942.0 56 109085.0 57 103228.0 58 95615.0 59 88002.0 60 76543.5 61 65085.0 62 59850.5 63 54616.0 64 46340.0 65 38064.0 66 31220.5 67 24377.0 68 19878.5 69 15380.0 70 13290.5 71 11201.0 72 9685.5 73 8170.0 74 6570.5 75 3828.0 76 2685.0 77 2073.5 78 1462.0 79 985.0 80 508.0 81 448.5 82 389.0 83 229.0 84 69.0 85 49.5 86 30.0 87 26.0 88 22.0 89 17.0 90 12.0 91 11.0 92 10.0 93 7.5 94 5.0 95 6.5 96 8.0 97 4.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2202022.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.69845221081983 #Duplication Level Percentage of deduplicated Percentage of total 1 81.25295310292249 14.380515074800584 2 7.854983663842901 2.780421059825881 3 2.301684685795937 1.2220876924780577 4 1.0996416447476633 0.7784782039437534 5 0.6569762173948068 0.5813731093603584 6 0.44778249659999475 0.47550342701499604 7 0.3328218558177656 0.4123302196934965 8 0.26148239178979804 0.3702266892050086 9 0.21507775890788167 0.3425889093877236 >10 2.451322229200049 10.487164644239568 >50 1.3376974962368804 17.572078631425704 >100 1.7745740094310607 48.20151183193736 >500 0.009361762065214125 1.0883446260857068 >1k 0.003380636301327323 0.9358649988085913 >5k 2.600489462559479E-4 0.3715108817932011 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8072 0.3665721777529925 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4478 0.20335854955127608 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2923 0.13274163473389458 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.082561391303084E-5 0.0 0.0 0.031516488027821705 0.0 2 9.082561391303084E-5 0.0 0.0 0.1263838417599824 0.0 3 9.082561391303084E-5 0.0 0.0 0.1813787509843226 0.0 4 9.082561391303084E-5 0.0 0.0 0.2897791211895249 0.0 5 9.082561391303084E-5 0.0 0.0 0.5506302843477495 0.0 6 9.082561391303084E-5 0.0 0.0 0.8605272790190107 0.0 7 9.082561391303084E-5 0.0 0.0 1.0840945276659362 0.0 8 9.082561391303084E-5 0.0 0.0 1.6927169664971558 0.0 9 9.082561391303084E-5 0.0 0.0 1.9935768125840705 0.0 10 9.082561391303084E-5 0.0 0.0 2.5196841811753017 0.0 11 9.082561391303084E-5 0.0 0.0 2.8432050179335175 0.0 12 9.082561391303084E-5 0.0 0.0 3.1928382186917297 0.0 13 9.082561391303084E-5 0.0 0.0 3.3130913315125827 0.0 14 9.082561391303084E-5 0.0 0.0 3.349694053919534 0.0 15 9.082561391303084E-5 0.0 0.0 3.4145889550603945 0.0 16 1.3623842086954625E-4 0.0 0.0 3.543697565237768 0.0 17 1.3623842086954625E-4 0.0 0.0 3.6901992804794865 0.0 18 1.3623842086954625E-4 0.0 0.0 3.96540089063597 0.0 19 1.3623842086954625E-4 0.0 0.0 4.072075574176825 0.0 20 1.3623842086954625E-4 0.0 0.0 4.182701171922896 0.0 21 1.3623842086954625E-4 0.0 0.0 4.3237533503298335 0.0 22 1.3623842086954625E-4 0.0 0.0 4.4584023229559016 0.0 23 1.3623842086954625E-4 0.0 0.0 4.615212745376749 0.0 24 1.3623842086954625E-4 0.0 0.0 4.737100719248037 0.0 25 1.3623842086954625E-4 0.0 0.0 4.826927251408024 0.0 26 1.8165122782606169E-4 0.0 0.0 4.923429466190619 0.0 27 1.8165122782606169E-4 0.0 0.0 5.013301411157563 0.0 28 1.8165122782606169E-4 0.0 0.0 5.118931600138418 0.0 29 1.8165122782606169E-4 0.0 0.0 5.225470045258404 0.0 30 1.8165122782606169E-4 0.0 0.0 5.3759680875122955 4.541280695651542E-5 31 1.8165122782606169E-4 0.0 0.0 5.510389996103581 4.541280695651542E-5 32 1.8165122782606169E-4 0.0 0.0 5.627963753314 4.541280695651542E-5 33 1.8165122782606169E-4 0.0 0.0 5.746173289821809 4.541280695651542E-5 34 2.270640347825771E-4 0.0 0.0 5.874736946315704 4.541280695651542E-5 35 2.270640347825771E-4 0.0 0.0 6.0436725881939415 4.541280695651542E-5 36 2.270640347825771E-4 0.0 0.0 6.178594037661749 4.541280695651542E-5 37 2.724768417390925E-4 0.0 0.0 6.306158612402601 4.541280695651542E-5 38 2.724768417390925E-4 0.0 0.0 6.436357129946931 4.541280695651542E-5 39 2.724768417390925E-4 0.0 0.0 6.565919868193869 4.541280695651542E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 45 3.8562575E-10 45.0 1 AAATCGT 20 7.034698E-4 45.0 36 TCCGATT 25 3.8919745E-5 45.0 29 ATTCGCA 20 7.034698E-4 45.0 17 ACGATAT 25 3.8919745E-5 45.0 24 ACCTAGT 40 6.8193913E-9 45.0 35 TCGTGAC 35 1.2126111E-7 45.0 17 CGGATAT 35 1.2126111E-7 45.0 12 TCGCTTA 20 7.034698E-4 45.0 41 TCGCTGA 40 6.8193913E-9 45.0 42 ACGTCCA 20 7.034698E-4 45.0 21 TCGACCC 20 7.034698E-4 45.0 17 CAATACG 25 3.8919745E-5 45.0 1 TACGTCA 35 1.2126111E-7 45.0 32 AGTCGAT 20 7.034698E-4 45.0 30 GTACGAT 20 7.034698E-4 45.0 27 ATCGTTC 30 2.166411E-6 44.999996 32 CGTAAAT 30 2.166411E-6 44.999996 18 ATACCGG 60 0.0 44.999996 2 TACCGGG 250 0.0 43.2 3 >>END_MODULE