SRR1546830_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546830_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1369288
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50189	3.6653355612551923	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT	2879	0.21025525674657194	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	2647	0.19331214470586172	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2173	0.15869561407096244	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTC	1531	0.1118099333376178	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	1461	0.10669778746326558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCG	30	2.165807E-6	45.000004	1
CGGCTAT	35	1.2121563E-7	45.000004	40
CCGGATA	40	6.8175723E-9	45.0	20
CACGACG	325	0.0	45.0	26
CTAACCG	20	7.03376E-4	45.0	1
CGCGTCA	40	6.8175723E-9	45.0	39
TCGGTAC	40	6.8175723E-9	45.0	36
CGTTTTT	20660	0.0	44.4228	1
CGACGGT	330	0.0	44.31818	28
TCACGAC	340	0.0	43.014706	25
ACGGTCT	340	0.0	43.014706	30
GCCGACC	90	0.0	42.5	14
GACGGTC	345	0.0	42.3913	29
CGGTCTA	345	0.0	42.3913	31
CGCGGGT	85	0.0	42.35294	4
CGTTTTC	400	0.0	41.625	1
GTTAGCG	65	0.0	41.53846	1
TCGTTAG	60	3.6379788E-12	41.250004	1
GCGATAT	155	0.0	40.64516	9
CTCACGA	360	0.0	40.625	24