SRR1546829_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546829_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1776568
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7832	0.44084999842392747	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2735	0.1539485119623904	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2586	0.1455615546379311	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1845	0.10385192123239864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATC	45	3.8562575E-10	45.000004	33
GGTACGA	25	3.891669E-5	45.0	8
CCCGTCA	40	6.8193913E-9	45.0	44
TATTACC	20	7.034327E-4	45.0	37
GCGATCG	20	7.034327E-4	45.0	9
AATTACG	35	1.2124292E-7	45.0	1
CACGTTA	20	7.034327E-4	45.0	45
CGGTAAT	25	3.891669E-5	45.0	6
ACTAACG	30	2.1661745E-6	44.999996	1
TAGCCGT	85	0.0	42.35294	44
CGTTTTT	5425	0.0	41.35023	1
GTTCACG	55	6.184564E-11	40.909092	1
TACGCGG	165	0.0	40.90909	2
ACATACG	575	0.0	40.695652	17
TTTAGCG	100	0.0	40.5	1
CGCGATA	50	1.0822987E-9	40.5	11
TCGTAAT	50	1.0822987E-9	40.5	32
TATTACG	90	0.0	40.000004	1
CGGTATA	40	3.459645E-7	39.375	35
CATACGA	590	0.0	39.279663	18