SRR1546827_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546827_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	686946
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3801	0.5533186014621236	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1142	0.1662430525834636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	20	7.0313015E-4	45.000004	1
CCGGTAC	40	6.8084773E-9	45.000004	17
TGTCGTT	20	7.0313015E-4	45.000004	20
ATCGACG	20	7.0313015E-4	45.000004	1
TAGCCGT	35	1.210974E-7	45.0	44
AACACGT	60	0.0	44.999996	41
CGTTTTT	2520	0.0	42.32143	1
CGGTACA	45	1.9263098E-8	40.0	18
AATGCGG	80	0.0	39.375004	2
CCGACAC	40	3.455516E-7	39.375004	11
ACACGAC	70	0.0	38.571426	26
CGGGCTA	35	6.2446197E-6	38.571426	6
AAACACG	70	0.0	38.571426	40
TGACGGG	270	0.0	38.333332	3
AGGGCGA	500	0.0	38.250004	6
GGACCGA	315	0.0	37.857143	8
TAGGGCG	270	0.0	37.5	5
CGTTCGG	30	1.1394437E-4	37.499996	45
TCGATAC	30	1.1394437E-4	37.499996	24
GGACGTA	30	1.1394437E-4	37.499996	7