##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546827_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 686946 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.916111310059307 33.0 31.0 34.0 30.0 34.0 2 32.299611614304474 33.0 31.0 34.0 31.0 34.0 3 32.35924366689667 34.0 31.0 34.0 30.0 34.0 4 35.97367333094596 37.0 35.0 37.0 35.0 37.0 5 35.93724834266449 37.0 35.0 37.0 35.0 37.0 6 35.98407880677666 37.0 35.0 37.0 35.0 37.0 7 36.19575483371327 37.0 35.0 37.0 35.0 37.0 8 36.05765518687058 37.0 35.0 37.0 35.0 37.0 9 37.81923761110772 39.0 38.0 39.0 35.0 39.0 10 37.605973395288714 39.0 37.0 39.0 35.0 39.0 11 37.40936842197203 39.0 37.0 39.0 35.0 39.0 12 36.846756513612426 39.0 35.0 39.0 33.0 39.0 13 36.69211262602883 39.0 35.0 39.0 33.0 39.0 14 37.848788696637 40.0 35.0 41.0 33.0 41.0 15 37.97358889927301 40.0 35.0 41.0 33.0 41.0 16 38.04445182008484 40.0 35.0 41.0 34.0 41.0 17 37.993900539489275 40.0 35.0 41.0 34.0 41.0 18 37.898377747304735 40.0 36.0 41.0 34.0 41.0 19 37.855329239852914 40.0 36.0 41.0 34.0 41.0 20 37.72499585120228 40.0 35.0 41.0 34.0 41.0 21 37.56869972312234 39.0 35.0 41.0 33.0 41.0 22 37.54048789861212 39.0 35.0 41.0 33.0 41.0 23 37.44452547944089 39.0 35.0 41.0 33.0 41.0 24 37.436316682825144 39.0 35.0 41.0 33.0 41.0 25 37.319064380606335 39.0 35.0 41.0 33.0 41.0 26 37.27101984726602 39.0 35.0 41.0 33.0 41.0 27 37.19108488876855 39.0 35.0 41.0 33.0 41.0 28 37.111272210624996 39.0 35.0 41.0 33.0 41.0 29 37.025943815088816 39.0 35.0 41.0 33.0 41.0 30 37.008577093395985 39.0 35.0 41.0 32.0 41.0 31 36.828641552611124 39.0 35.0 41.0 32.0 41.0 32 36.68169696016863 39.0 35.0 41.0 31.0 41.0 33 36.57755922590713 39.0 35.0 41.0 31.0 41.0 34 36.409502348073936 39.0 35.0 41.0 31.0 41.0 35 36.28716958829369 39.0 35.0 41.0 30.0 41.0 36 36.194061833098964 39.0 35.0 41.0 30.0 41.0 37 35.92721698648802 38.0 35.0 41.0 29.0 41.0 38 36.01824597566621 38.0 35.0 41.0 30.0 41.0 39 35.921673610443904 38.0 35.0 41.0 30.0 41.0 40 35.81216864207667 38.0 35.0 41.0 29.0 41.0 41 35.74686074305695 38.0 35.0 41.0 29.0 41.0 42 35.74547344332742 38.0 35.0 41.0 29.0 41.0 43 35.64617306163803 38.0 35.0 40.0 29.0 41.0 44 35.50053133725213 38.0 35.0 40.0 28.0 41.0 45 35.451828819150265 38.0 35.0 40.0 28.0 41.0 46 35.275165733551106 37.0 35.0 40.0 27.0 41.0 47 35.259889423622816 37.0 35.0 40.0 28.0 41.0 48 35.13150669776081 37.0 35.0 40.0 27.0 41.0 49 35.100577046812994 37.0 35.0 40.0 27.0 41.0 50 34.97500968052802 37.0 34.0 40.0 27.0 41.0 51 34.41323335458682 36.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 4.0 13 8.0 14 8.0 15 31.0 16 45.0 17 121.0 18 253.0 19 463.0 20 802.0 21 1265.0 22 2030.0 23 2931.0 24 4316.0 25 6380.0 26 8519.0 27 9982.0 28 10058.0 29 10788.0 30 12192.0 31 14625.0 32 18116.0 33 24014.0 34 46151.0 35 92662.0 36 43075.0 37 58349.0 38 97750.0 39 221919.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.98835134057117 22.24643567325525 26.97679293568927 13.788420050484318 2 34.191479388481774 24.871532842465054 27.7641910717873 13.17279669726587 3 30.661362028456384 24.892204045150564 30.317666890847317 14.128767035545733 4 26.977375223088863 27.08990226305998 29.607567407045092 16.325155106806065 5 23.76678807358948 31.31570749374769 28.982481883583276 15.93502254907955 6 21.589906630215474 39.808078073094535 27.794324444716178 10.807690851973808 7 83.22939503250619 5.545705193712461 8.279835678495836 2.94506409528551 8 83.64543937951456 4.859188349593709 8.25668975436206 3.2386825165296833 9 78.0553347715832 6.7024191130016035 10.569535305540755 4.672710809874429 10 44.51921985134203 25.662133559260848 16.6572044964233 13.161442092973829 11 38.00051241291164 24.290992305072017 22.818824187054005 14.88967109496234 12 33.76014999723414 23.03601738710175 27.139251120175384 16.064581495488728 13 23.395871000049496 32.20355020627531 27.91034520908485 16.490233584590346 14 18.511789864123234 35.219071076911426 29.258922826539496 17.010216232425837 15 16.772642973392376 24.81010152180812 41.71623388155692 16.701021623242585 16 19.345188704789024 21.986298777487605 39.66905695644199 18.99945556128138 17 20.839192600291724 21.336757183242934 28.68653431274074 29.137515903724605 18 23.320464781802354 23.81686478995438 32.02566140570001 20.837009022543256 19 28.04252444879219 24.886381171154646 26.919874342379167 20.151220037673994 20 29.684720487491013 24.00523476372233 25.619335435390845 20.690709313395814 21 25.268507277136777 26.747226128400193 27.93334556136872 20.050921033094305 22 24.071178811726103 24.734695303560976 27.91806051712944 23.276065367583477 23 22.134927636233414 28.535285160696766 26.3840243629048 22.94576284016502 24 21.90667097559342 25.580467751468095 32.8452309206255 19.667630352312994 25 20.406116346845312 26.269022601485414 31.54614773213615 21.77871331953312 26 19.783505544831762 30.72046419951495 27.756039048193017 21.739991207460267 27 20.97544785179621 28.912316251932467 29.412646700031736 20.699589196239586 28 19.222326063475148 26.70748501337805 34.837381686479 19.2328072366678 29 19.720181790126155 25.37288229351361 34.05667985547627 20.85025606088397 30 21.332390027745994 26.867905191965598 30.76864848183118 21.03105629845723 31 26.85043656997784 25.710754557126762 26.120539314589504 21.318269558305893 32 27.462129483249047 27.691696290538122 26.270187176284598 18.575987049928234 33 25.80610411880992 26.63076864848183 26.920456629778762 20.64267060292949 34 21.51843085191558 28.184893717992388 28.879562585705425 21.417112844386605 35 21.903613966745567 26.83704395978723 29.649783243515504 21.6095588299517 36 27.07709194026896 25.90145368049308 27.16705534350589 19.85439903573207 37 22.620846471192788 28.88989818704818 28.344731609180347 20.14452373257869 38 22.440337377319324 30.1052775618462 25.600265523054215 21.85411953778026 39 22.184713208898515 29.027463585201748 26.828891936192946 21.958931269706788 40 23.099049998107564 26.355346708474904 27.317285492600586 23.22831780081695 41 20.331874703397357 25.370698715765137 28.280388851525444 26.017037729312058 42 23.094973986310425 27.373476226661193 26.17614776125052 23.355402025777863 43 23.383788536507964 27.755893476343118 26.196964535785927 22.663353451362987 44 22.293164237072492 29.176820303197047 27.36794449636507 21.162070963365387 45 20.36215364817613 31.33958127713095 25.82619303409584 22.472072040597077 46 23.0753217865742 29.030666165899504 27.35018473067752 20.543827316848777 47 22.849539847382474 27.693734296436688 27.823729958395564 21.63299589778527 48 23.465017628751024 25.329065166694324 28.988304757579197 22.217612446975455 49 21.862562705074343 25.32571701414667 29.866394156163658 22.945326124615324 50 20.64965805172459 29.56753514832316 27.595327725905676 22.187479074046575 51 20.65300620427224 30.862542325015358 25.634183764080436 22.850267706631964 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 580.0 1 846.5 2 1113.0 3 3889.0 4 6665.0 5 4739.0 6 2813.0 7 2883.0 8 2953.0 9 3058.5 10 3164.0 11 3170.0 12 3176.0 13 3175.5 14 3175.0 15 3092.5 16 3010.0 17 2987.0 18 2964.0 19 2795.0 20 2626.0 21 2792.0 22 2958.0 23 3411.5 24 3865.0 25 4287.5 26 5282.5 27 5855.0 28 6697.5 29 7540.0 30 9135.0 31 10730.0 32 11967.0 33 13204.0 34 14946.5 35 16689.0 36 18351.5 37 20014.0 38 23655.5 39 27297.0 40 34243.5 41 41190.0 42 48607.0 43 56024.0 44 57330.0 45 58636.0 46 58090.5 47 57545.0 48 55445.5 49 53346.0 50 51810.5 51 50275.0 52 46962.5 53 43650.0 54 40630.0 55 37610.0 56 34240.0 57 30870.0 58 28915.5 59 26961.0 60 25992.0 61 25023.0 62 21591.5 63 18160.0 64 16385.0 65 14610.0 66 12271.0 67 9932.0 68 8267.0 69 6602.0 70 5513.0 71 4424.0 72 3691.0 73 2958.0 74 2405.0 75 1485.5 76 1119.0 77 799.0 78 479.0 79 396.5 80 314.0 81 255.0 82 196.0 83 116.0 84 36.0 85 25.5 86 15.0 87 12.0 88 9.0 89 6.0 90 3.0 91 3.0 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 686946.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.13369826571661 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76917721451153 20.55897992380166 2 5.353209665388144 2.905047516275194 3 2.2859370632080878 1.8607777958251988 4 1.5549706756393058 1.687684204993377 5 1.1957689138221421 1.6222816451586848 6 0.9887107534058013 1.6096427552989414 7 0.9072581109667301 1.7232087482466703 8 0.7448401080926544 1.6168213399351865 9 0.6697237983939809 1.6354875120292711 >10 10.304468930959201 59.94480810337307 >50 0.20805503595965189 3.366305682579133 >100 0.016796109673824396 0.742269079890845 >500 0.0 0.0 >1k 0.0010836199789564128 0.726685692592681 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3801 0.5533186014621236 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1142 0.1662430525834636 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.017177478287958587 0.0 2 0.0 0.0 0.0 0.07074791905040571 0.0 3 0.0 0.0 0.0 0.11602076436866944 0.0 4 0.0 0.0 0.0 0.1831293871716263 0.0 5 0.0 0.0 0.0 0.35024587085447767 0.0 6 0.0 0.0 0.0 0.6100916229223258 0.0 7 0.0 0.0 0.0 0.799626171489462 0.0 8 0.0 0.0 0.0 1.298064185540057 0.0 9 0.0 0.0 0.0 1.5574732220582113 0.0 10 0.0 0.0 0.0 1.945422202036259 0.0 11 0.0 0.0 0.0 2.171786428627578 0.0 12 0.0 0.0 0.0 2.396549364870019 0.0 13 0.0 0.0 0.0 2.4854937651576687 0.0 14 0.0 0.0 0.0 2.5218867276321575 0.0 15 0.0 0.0 0.0 2.573710306195829 0.0 16 0.0 0.0 0.0 2.669205439728887 0.0 17 0.0 0.0 0.0 2.7772197523531688 0.0 18 0.0 0.0 0.0 2.947247673033979 0.0 19 0.0 0.0 0.0 3.017704448384589 0.0 20 0.0 0.0 0.0 3.104028555374076 0.0 21 0.0 0.0 0.0 3.2068022814020316 0.0 22 0.0 0.0 0.0 3.307829145231212 0.0 23 0.0 0.0 0.0 3.4196283259528406 0.0 24 0.0 0.0 0.0 3.5149778876360007 0.0 25 0.0 0.0 0.0 3.5948968332299773 0.0 26 0.0 0.0 0.0 3.678455075071403 0.0 27 0.0 0.0 0.0 3.7598297391643594 0.0 28 0.0 0.0 0.0 3.843679124705581 0.0 29 0.0 0.0 0.0 3.933351384242721 0.0 30 0.0 0.0 0.0 4.063201474351696 0.0 31 0.0 0.0 0.0 4.1674309188786305 0.0 32 0.0 0.0 0.0 4.275299659653015 0.0 33 0.0 0.0 0.0 4.375453092382807 0.0 34 0.0 0.0 0.0 4.472549516264743 0.0 35 0.0 0.0 0.0 4.599779313075555 0.0 36 0.0 0.0 0.0 4.726426822486775 0.0 37 0.0 0.0 0.0 4.837352572109016 0.0 38 1.4557184989795414E-4 0.0 0.0 4.952645477228195 0.0 39 1.4557184989795414E-4 0.0 0.0 5.098945186375639 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGCG 20 7.0313015E-4 45.000004 1 CCGGTAC 40 6.8084773E-9 45.000004 17 TGTCGTT 20 7.0313015E-4 45.000004 20 ATCGACG 20 7.0313015E-4 45.000004 1 TAGCCGT 35 1.210974E-7 45.0 44 AACACGT 60 0.0 44.999996 41 CGTTTTT 2520 0.0 42.32143 1 CGGTACA 45 1.9263098E-8 40.0 18 AATGCGG 80 0.0 39.375004 2 CCGACAC 40 3.455516E-7 39.375004 11 ACACGAC 70 0.0 38.571426 26 CGGGCTA 35 6.2446197E-6 38.571426 6 AAACACG 70 0.0 38.571426 40 TGACGGG 270 0.0 38.333332 3 AGGGCGA 500 0.0 38.250004 6 GGACCGA 315 0.0 37.857143 8 TAGGGCG 270 0.0 37.5 5 CGTTCGG 30 1.1394437E-4 37.499996 45 TCGATAC 30 1.1394437E-4 37.499996 24 GGACGTA 30 1.1394437E-4 37.499996 7 >>END_MODULE