##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546825_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1843115 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.961773410774693 33.0 31.0 34.0 30.0 34.0 2 32.360280828922775 34.0 31.0 34.0 31.0 34.0 3 32.41866079978732 34.0 31.0 34.0 30.0 34.0 4 36.01194173993484 37.0 35.0 37.0 35.0 37.0 5 35.965607137915974 37.0 35.0 37.0 35.0 37.0 6 36.016159056814146 37.0 35.0 37.0 35.0 37.0 7 36.25083567764356 37.0 36.0 37.0 35.0 37.0 8 36.1281195150601 37.0 36.0 37.0 35.0 37.0 9 37.9353621450642 39.0 39.0 39.0 35.0 39.0 10 37.67062934217344 39.0 38.0 39.0 35.0 39.0 11 37.428076924120305 39.0 37.0 39.0 35.0 39.0 12 36.74098252143789 39.0 35.0 39.0 33.0 39.0 13 36.55052940266885 39.0 35.0 39.0 33.0 39.0 14 37.67163579049598 40.0 35.0 41.0 33.0 41.0 15 37.82609658105978 40.0 35.0 41.0 33.0 41.0 16 37.915547863264095 40.0 35.0 41.0 34.0 41.0 17 37.85893500948123 40.0 35.0 41.0 34.0 41.0 18 37.799919701158096 39.0 36.0 41.0 34.0 41.0 19 37.748551229847294 39.0 36.0 41.0 34.0 41.0 20 37.63046635722676 39.0 35.0 41.0 34.0 41.0 21 37.47308116965029 39.0 35.0 41.0 33.0 41.0 22 37.43442161775038 39.0 35.0 41.0 33.0 41.0 23 37.368780027290754 39.0 35.0 41.0 33.0 41.0 24 37.35846705170323 39.0 35.0 41.0 33.0 41.0 25 37.25101797771707 39.0 35.0 41.0 33.0 41.0 26 37.20733595027983 39.0 35.0 41.0 33.0 41.0 27 37.126235747633764 39.0 35.0 41.0 33.0 41.0 28 37.093526990990796 39.0 35.0 41.0 33.0 41.0 29 37.00671146401608 39.0 35.0 41.0 33.0 41.0 30 36.978545017538245 39.0 35.0 41.0 33.0 41.0 31 36.81383418831706 38.0 35.0 41.0 32.0 41.0 32 36.68400940798594 39.0 35.0 41.0 32.0 41.0 33 36.5885324572802 39.0 35.0 41.0 32.0 41.0 34 36.43707256465277 39.0 35.0 41.0 31.0 41.0 35 36.34513201834937 38.0 35.0 41.0 31.0 41.0 36 36.24337927910087 38.0 35.0 41.0 31.0 41.0 37 35.97702313746022 38.0 35.0 41.0 30.0 41.0 38 36.072434980996846 38.0 35.0 41.0 30.0 41.0 39 36.004485341392154 38.0 35.0 41.0 30.0 41.0 40 35.88400778030671 38.0 35.0 41.0 30.0 41.0 41 35.83052658135819 38.0 35.0 41.0 30.0 41.0 42 35.81637608071119 38.0 35.0 40.0 30.0 41.0 43 35.70409117173915 38.0 35.0 40.0 30.0 41.0 44 35.570743008439514 37.0 35.0 40.0 29.0 41.0 45 35.52918727263356 37.0 35.0 40.0 29.0 41.0 46 35.3768522311413 37.0 35.0 40.0 29.0 41.0 47 35.370807573048886 37.0 35.0 40.0 29.0 41.0 48 35.2402639010588 37.0 35.0 40.0 29.0 41.0 49 35.22203714906558 36.0 35.0 40.0 29.0 41.0 50 35.08549439400146 36.0 34.0 40.0 28.0 41.0 51 34.54923485512298 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 7.0 12 6.0 13 6.0 14 16.0 15 52.0 16 108.0 17 233.0 18 592.0 19 1079.0 20 1888.0 21 3102.0 22 4670.0 23 7183.0 24 10214.0 25 15410.0 26 20804.0 27 24854.0 28 26265.0 29 27920.0 30 31744.0 31 38264.0 32 48464.0 33 65602.0 34 131582.0 35 288817.0 36 112113.0 37 147140.0 38 246678.0 39 588049.0 40 247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.627635823049566 23.61616068449337 28.72994902651218 14.026254465944882 2 32.34800867010469 25.595527137481927 28.39556945714185 13.660894735271537 3 29.16285744514043 25.304064043752017 31.397389745078303 14.13568876602925 4 26.30562932860945 27.039061588669185 30.586642721696695 16.06866636102468 5 23.68132210958079 30.67567677545894 29.919402750235335 15.723598364724936 6 21.590730909357255 39.73588191729762 27.405831974673312 11.267555198671813 7 85.72411379648042 4.708224934418091 7.222066989851419 2.345594279250074 8 86.61109046369869 3.7982437341131727 6.951058398417896 2.6396074037702477 9 81.4814051212214 5.576971594284676 9.166655363338695 3.774967921155218 10 47.789910016466685 25.579141833255115 14.544561788059887 12.08638636221831 11 41.69175553343118 21.110402769224926 22.411298264080102 14.786543433263796 12 36.0217891992632 21.539513269654904 26.128049524853303 16.310648006228586 13 22.881100745205806 34.55101824899695 26.90070885430372 15.66717215149353 14 17.276133068202473 37.76492514031951 29.462024887215392 15.49691690426262 15 15.94241270891941 24.008594146322938 43.822333386685045 16.22665975807261 16 18.41512873586293 20.578965501338768 41.943394742053535 19.062511020744772 17 19.29771066916606 19.95073557537104 29.65935386560253 31.09219988986037 18 22.967476256229265 23.356111799860564 32.43997254647702 21.23643939743315 19 27.93726924255947 25.056873825019053 26.30926447888493 20.696592453536542 20 29.230189109198285 24.87338012006847 25.186382835579984 20.71004793515326 21 24.197296424802577 27.04915319988172 28.966613586238516 19.786936789077185 22 23.622725657378947 23.625546968040517 27.795389869867044 24.95633750471349 23 20.464810931493695 28.51314215336536 27.084799374971176 23.937247540169768 24 20.802391603345423 25.083622020329717 34.668862225091765 19.445124151233102 25 19.845207705433467 25.46048401754638 33.101027336872626 21.593280940147523 26 18.51013094679388 31.05563136320848 28.07258364236632 22.36165404763132 27 19.483374613087083 29.850334895001122 29.96231922587576 20.70397126603603 28 18.183130189923038 26.554935530338586 36.46153387064833 18.800400409090045 29 18.40568819634152 25.363257311670733 35.5507388307295 20.68031566125825 30 19.87922620129509 27.055338380947475 32.36726954096733 20.69816587679011 31 27.465350778437593 25.05497486591992 26.170314928802597 21.309359426839887 32 28.29942787075142 26.262441573097718 26.005648046920566 19.432482509230297 33 26.029466419621127 25.41886968528822 26.796157591902837 21.75550630318781 34 19.97417415625178 27.00797291541765 30.21629144139134 22.80156148693923 35 20.783944572096694 25.25295491599819 30.8936772800395 23.069423231865617 36 27.5138556194269 23.647303613719163 28.365077599607186 20.47376316724675 37 22.24646861427529 28.11685651736327 28.82137034314191 20.81530452521953 38 21.735702872582557 30.580783076476507 25.009888151309063 22.673625899631876 39 21.81448254720948 28.54493615428229 27.133521239857522 22.50706005865071 40 23.06383486651674 25.03728741831085 27.05919055512 24.839687160052414 41 19.98204127251962 24.067407622421825 27.852141618944014 28.09840948611454 42 23.042783548503483 26.694536152112047 25.689064437107834 24.573615862276636 43 22.43115595065962 26.72378012223871 26.345670237614037 24.499393689487633 44 21.723875070193664 28.3938332659655 28.52654337900782 21.355748284833016 45 19.463245646636267 31.922045016181844 25.9694593120885 22.64525002509339 46 22.390301202041112 29.55626751450669 27.37268157439986 20.680749709052336 47 22.171703881743678 26.69187760937326 27.65296793743201 23.483450571451048 48 23.50444763349004 24.22550953141828 29.95776172403784 22.312281111053842 49 22.08706456189657 23.363002308591703 30.819834899070326 23.7300982304414 50 20.56214614931787 29.688597835729187 27.550966705821395 22.198289309131553 51 20.029515249997964 31.165499711086937 25.685483542806608 23.11950149610849 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1440.0 1 2300.5 2 3161.0 3 9903.5 4 16646.0 5 11586.0 6 6526.0 7 6864.0 8 7202.0 9 7625.0 10 8048.0 11 8103.5 12 8159.0 13 7875.5 14 7592.0 15 7338.5 16 7085.0 17 6934.5 18 6784.0 19 6457.0 20 6130.0 21 6735.5 22 7341.0 23 7921.5 24 8502.0 25 10015.5 26 13029.5 27 14530.0 28 16714.0 29 18898.0 30 22605.0 31 26312.0 32 30745.0 33 35178.0 34 39254.0 35 43330.0 36 47487.5 37 51645.0 38 63595.5 39 75546.0 40 95764.5 41 115983.0 42 135904.0 43 155825.0 44 158813.5 45 161802.0 46 158728.0 47 155654.0 48 156969.5 49 158285.0 50 150197.5 51 142110.0 52 130581.5 53 119053.0 54 109130.5 55 99208.0 56 90110.0 57 81012.0 58 75096.5 59 69181.0 60 63750.0 61 58319.0 62 52398.5 63 46478.0 64 41719.5 65 36961.0 66 30069.5 67 23178.0 68 20094.5 69 17011.0 70 14650.5 71 12290.0 72 10687.0 73 9084.0 74 7070.0 75 3696.5 76 2337.0 77 1885.5 78 1434.0 79 986.5 80 539.0 81 519.5 82 500.0 83 322.0 84 144.0 85 92.5 86 41.0 87 29.5 88 18.0 89 16.5 90 15.0 91 13.0 92 11.0 93 6.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1843115.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.32992373047452 #Duplication Level Percentage of deduplicated Percentage of total 1 80.85220694235954 16.437192005787118 2 6.580190240128619 2.6754953142765525 3 2.1122779715466744 1.2882735017731597 4 1.0856534603669115 0.8828500818794022 5 0.7042748607042633 0.715892710170412 6 0.5174246783171527 0.6311522547871816 7 0.4054664692597655 0.5770171676721076 8 0.3438992545942159 0.5593156493493958 9 0.2829286284187117 0.5176725693228157 >10 4.0971870308111145 20.963560595222532 >50 2.2297110500573845 32.731661542314754 >100 0.784458814116362 20.681273798878603 >500 0.0029704120319851285 0.38566132423622645 >1k 0.001080149829812774 0.4168436206299882 >5k 2.700374574531935E-4 0.5361378636997847 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9766 0.5298638446325921 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3898 0.21148978766924476 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016873607995160366 0.0 2 0.0 0.0 0.0 0.08507336764119439 0.0 3 0.0 0.0 0.0 0.15001776883157047 0.0 4 0.0 0.0 0.0 0.25522010292358316 0.0 5 0.0 0.0 0.0 0.4846686180732076 0.0 6 0.0 0.0 0.0 0.815630061065099 0.0 7 0.0 0.0 0.0 1.0384593473548855 0.0 8 0.0 0.0 0.0 1.5920330527395197 0.0 9 0.0 0.0 0.0 1.8947271331414481 0.0 10 0.0 0.0 0.0 2.363173214910627 0.0 11 0.0 0.0 0.0 2.6712386367643908 0.0 12 0.0 0.0 0.0 2.9615623550348187 0.0 13 5.425597426096581E-5 0.0 0.0 3.081956361919902 0.0 14 5.425597426096581E-5 0.0 0.0 3.129701619269552 0.0 15 5.425597426096581E-5 0.0 0.0 3.192638549412272 0.0 16 1.0851194852193162E-4 0.0 0.0 3.321008184513717 5.425597426096581E-5 17 1.0851194852193162E-4 0.0 0.0 3.4537182975560397 5.425597426096581E-5 18 1.0851194852193162E-4 0.0 0.0 3.681159341658008 5.425597426096581E-5 19 1.0851194852193162E-4 0.0 0.0 3.7812073581952292 5.425597426096581E-5 20 1.0851194852193162E-4 0.0 0.0 3.8999736858524834 5.425597426096581E-5 21 1.0851194852193162E-4 0.0 0.0 4.033063590714632 5.425597426096581E-5 22 1.0851194852193162E-4 0.0 0.0 4.157309771772244 5.425597426096581E-5 23 1.0851194852193162E-4 0.0 0.0 4.294197594832661 5.425597426096581E-5 24 1.0851194852193162E-4 0.0 0.0 4.4034691269942465 5.425597426096581E-5 25 1.0851194852193162E-4 0.0 0.0 4.493696812190232 5.425597426096581E-5 26 1.0851194852193162E-4 0.0 0.0 4.58511812881996 5.425597426096581E-5 27 1.0851194852193162E-4 0.0 0.0 4.681802274953001 5.425597426096581E-5 28 1.0851194852193162E-4 0.0 0.0 4.777509813549345 5.425597426096581E-5 29 1.0851194852193162E-4 0.0 0.0 4.8822780998472695 5.425597426096581E-5 30 1.0851194852193162E-4 0.0 0.0 5.036093786877108 5.425597426096581E-5 31 1.0851194852193162E-4 0.0 0.0 5.159092080526717 5.425597426096581E-5 32 1.0851194852193162E-4 0.0 0.0 5.277641384286928 5.425597426096581E-5 33 1.0851194852193162E-4 0.0 0.0 5.392881073617219 5.425597426096581E-5 34 1.0851194852193162E-4 0.0 0.0 5.5119729371200386 5.425597426096581E-5 35 1.0851194852193162E-4 0.0 0.0 5.657433204113688 5.425597426096581E-5 36 1.0851194852193162E-4 0.0 0.0 5.77777295502451 5.425597426096581E-5 37 1.0851194852193162E-4 0.0 0.0 5.900065921008727 5.425597426096581E-5 38 1.0851194852193162E-4 0.0 0.0 6.027079156753648 5.425597426096581E-5 39 1.0851194852193162E-4 0.0 0.0 6.166245730733025 5.425597426096581E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCGA 30 2.166218E-6 45.000004 41 GTATGCG 75 0.0 45.000004 1 ACGTACA 20 7.0343964E-4 45.0 29 GCGTGAT 20 7.0343964E-4 45.0 14 CGGTATA 20 7.0343964E-4 45.0 45 TATCGCG 105 0.0 42.857143 1 CGTTTTT 6030 0.0 42.425373 1 CGGTCTA 495 0.0 41.81818 31 TCACGAC 485 0.0 41.75258 25 CACGACG 485 0.0 41.75258 26 CGACGGT 480 0.0 41.718754 28 TACGGGA 420 0.0 41.25 4 TACGGGC 280 0.0 40.98214 4 ATTAACG 50 1.0822987E-9 40.5 1 TAACGCC 195 0.0 40.384617 12 ACGTTAG 85 0.0 39.705883 1 GCGCGAC 955 0.0 39.109947 9 AGTCGGC 180 0.0 38.75 30 GTTGCGA 35 6.250344E-6 38.571426 11 CGACAGG 165 0.0 38.181816 2 >>END_MODULE