##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546822_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 585369 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92675218537367 33.0 31.0 34.0 30.0 34.0 2 32.32573983248173 34.0 31.0 34.0 31.0 34.0 3 32.34327919654098 34.0 31.0 34.0 30.0 34.0 4 35.98050460478775 37.0 35.0 37.0 35.0 37.0 5 35.94111064986359 37.0 35.0 37.0 35.0 37.0 6 35.99545414943395 37.0 35.0 37.0 35.0 37.0 7 36.222405012906385 37.0 35.0 37.0 35.0 37.0 8 36.08920868716997 37.0 36.0 37.0 35.0 37.0 9 37.91914501792886 39.0 39.0 39.0 35.0 39.0 10 37.64552786362107 39.0 37.0 39.0 35.0 39.0 11 37.434941037191926 39.0 37.0 39.0 35.0 39.0 12 36.99586927220266 39.0 35.0 39.0 33.0 39.0 13 36.890088132442955 39.0 35.0 39.0 33.0 39.0 14 38.09013459885986 40.0 36.0 41.0 33.0 41.0 15 38.20396536201951 40.0 36.0 41.0 33.0 41.0 16 38.271609873430265 40.0 36.0 41.0 34.0 41.0 17 38.18520112954393 40.0 36.0 41.0 34.0 41.0 18 38.042976310669 40.0 36.0 41.0 34.0 41.0 19 37.923077580124676 40.0 36.0 41.0 34.0 41.0 20 37.69576967690465 40.0 35.0 41.0 34.0 41.0 21 37.58915145831091 39.0 35.0 41.0 33.0 41.0 22 37.56363763711437 39.0 35.0 41.0 33.0 41.0 23 37.45334139662333 39.0 35.0 41.0 33.0 41.0 24 37.447919175767765 39.0 35.0 41.0 33.0 41.0 25 37.37003326107122 39.0 35.0 41.0 33.0 41.0 26 37.31139161793672 39.0 35.0 41.0 33.0 41.0 27 37.220939270784754 39.0 35.0 41.0 33.0 41.0 28 37.1695716718856 39.0 35.0 41.0 33.0 41.0 29 37.04545338068808 39.0 35.0 41.0 33.0 41.0 30 36.98168164012785 39.0 35.0 41.0 33.0 41.0 31 36.764384516433225 39.0 35.0 41.0 32.0 41.0 32 36.485485223850254 39.0 35.0 41.0 31.0 41.0 33 36.21757728885541 39.0 35.0 41.0 30.0 41.0 34 35.94449654833105 39.0 35.0 41.0 29.0 41.0 35 35.73573762874358 39.0 35.0 41.0 27.0 41.0 36 35.61312266279902 39.0 35.0 41.0 26.0 41.0 37 35.349757161721925 39.0 35.0 41.0 24.0 41.0 38 35.432422967393215 39.0 35.0 41.0 25.0 41.0 39 35.33301387671708 38.0 35.0 41.0 24.0 41.0 40 35.21967169426464 38.0 35.0 41.0 24.0 41.0 41 35.12337517019179 38.0 35.0 41.0 23.0 41.0 42 35.11710732888144 38.0 35.0 41.0 23.0 41.0 43 34.98795460641066 38.0 35.0 41.0 23.0 41.0 44 34.8702715722903 38.0 35.0 40.0 23.0 41.0 45 34.83703612593082 38.0 34.0 40.0 23.0 41.0 46 34.6663232935123 38.0 34.0 40.0 23.0 41.0 47 34.655282394523795 37.0 34.0 40.0 23.0 41.0 48 34.52915682244875 37.0 34.0 40.0 23.0 41.0 49 34.48730629739532 37.0 34.0 40.0 23.0 41.0 50 34.35701412271576 37.0 34.0 40.0 23.0 41.0 51 33.81786360398313 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 0.0 12 1.0 13 0.0 14 9.0 15 12.0 16 30.0 17 89.0 18 209.0 19 476.0 20 813.0 21 1321.0 22 2144.0 23 3034.0 24 4461.0 25 7092.0 26 10293.0 27 12002.0 28 11501.0 29 10654.0 30 11133.0 31 12269.0 32 14797.0 33 19555.0 34 35556.0 35 68370.0 36 36658.0 37 46665.0 38 80420.0 39 195726.0 40 76.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.07737341745121 21.93317377585762 27.528618700341152 18.46083410635001 2 35.25724799229204 24.5265806696289 28.207848382814944 12.008322955264115 3 27.601734974007847 24.696558922662458 34.83751274836898 12.864193354960719 4 24.51205991434463 26.085938954744787 35.35940577652729 14.042595354383302 5 22.992163917118948 30.115021465092955 32.92743551503411 13.965379102753989 6 19.72243149193073 38.79382064988067 30.95056280739158 10.533185050797018 7 82.32721582454828 3.743109047455537 11.991410546168314 1.9382645818278728 8 83.21315272930408 3.7947004368184856 11.027574060122761 1.9645727737546743 9 78.77748907099624 5.172463864673394 12.558744996745643 3.49130206758472 10 40.518032215576845 29.662486397468946 18.925327443031662 10.894153943922552 11 33.11654699855988 22.952872461643853 29.61072417569089 14.319856364105377 12 29.96503060462717 21.623967104510147 31.375081358937695 17.03592093192499 13 23.049392776180493 28.86281986234324 32.025782028088265 16.062005333388 14 17.17685767439 32.383505105326726 33.747260275142686 16.692376945140587 15 16.54119025776903 24.350452449651417 42.40504707287198 16.703310219707568 16 20.184533174800855 21.617475472736 39.63807444534986 18.55991690711329 17 19.624544518073215 22.062323081680102 33.0080684149656 25.30506398528108 18 21.862107491172235 23.68181437691439 34.292557344170945 20.163520787742435 19 25.2717516643348 25.227506068821548 30.072142528900574 19.428599737943074 20 26.068001551158332 25.4668422823894 30.172250324154508 18.292905842297763 21 23.403015875456337 25.511087877902654 32.64163288455658 18.444263362084428 22 21.73176235844399 23.281895693143984 32.484808727486424 22.501533220925605 23 19.976459293197966 26.949325980706185 31.87220368690518 21.202011039190662 24 20.34255315877677 25.47606723280529 35.648625055306994 18.532754553110944 25 19.89360557187005 26.17220932437488 33.91023439915677 20.023950704598295 26 18.665491339650718 29.308863298193106 31.29034848104358 20.735296881112596 27 19.30440457215876 27.42082344640731 33.394833002772614 19.879938978661325 28 17.879833062563954 26.801385109221705 36.81660627740793 18.502175550806417 29 18.50849635016545 25.140723201946123 36.83573950790014 19.515040939988282 30 20.266874398883438 25.90058578435141 34.65540539386268 19.17713442290248 31 24.50010164528699 25.486317177711836 29.830414661521193 20.183166515479982 32 25.757769885320197 26.27402544377991 29.792148200536754 18.17605647036314 33 23.70419342329368 26.07517651259291 29.96451810738184 20.256111956731566 34 20.12030018671983 27.51512293954753 31.7205045022883 20.644072371444334 35 20.518852211169364 26.617056933318985 31.776366702028973 21.087724153482675 36 24.70783386205966 26.53249488783998 29.044585552019324 19.71508569808104 37 21.041599401403218 29.17561401440801 29.791294038461206 19.991492545727567 38 20.72897608175356 29.861847825901265 27.380848661271777 22.028327431073393 39 20.76963419654953 28.34981011977061 28.832411692453817 22.048143991226045 40 22.039089873225265 26.48824929232672 28.256877285951255 23.21578354849676 41 19.800160240805372 26.27180462238349 29.21507630229821 24.712958834512932 42 22.122456091798508 27.826721264706535 27.446789973503893 22.604032669991064 43 21.72800404531159 27.87182102229534 28.35288510324257 22.0472898291505 44 21.47893038408252 28.81584094818824 29.438012604015583 20.267216063713658 45 20.075200429131026 30.038317710708974 27.963216364378706 21.923265495781294 46 22.364696456423214 28.800295198413306 28.606912904509805 20.228095440653675 47 20.909375112108773 27.705601082394182 29.98963047240288 21.395393333094166 48 22.49504158915146 26.14333864622144 30.119804772716012 21.241814991911085 49 21.172286198961682 25.39765515427021 31.13420765363386 22.295850993134245 50 20.071271283583517 28.695916592781646 29.795735681254047 21.43707644238079 51 19.575515614936904 30.014572005008805 28.408405638153027 22.00150674190126 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 603.0 1 809.0 2 1015.0 3 7644.5 4 14274.0 5 9592.0 6 4910.0 7 4837.0 8 4764.0 9 5006.5 10 5249.0 11 5116.0 12 4983.0 13 4723.5 14 4464.0 15 4261.5 16 4059.0 17 3797.5 18 3536.0 19 3361.0 20 3186.0 21 3241.5 22 3297.0 23 3463.0 24 3629.0 25 4400.0 26 5393.0 27 5615.0 28 6888.0 29 8161.0 30 9386.5 31 10612.0 32 12348.5 33 14085.0 34 15401.0 35 16717.0 36 18061.5 37 19406.0 38 21710.5 39 24015.0 40 28471.0 41 32927.0 42 36731.0 43 40535.0 44 41808.0 45 43081.0 46 45368.5 47 47656.0 48 46216.5 49 44777.0 50 43555.5 51 42334.0 52 39676.0 53 37018.0 54 32805.0 55 28592.0 56 27014.5 57 25437.0 58 23527.0 59 21617.0 60 19524.0 61 17431.0 62 14875.0 63 12319.0 64 10932.0 65 9545.0 66 8118.5 67 6692.0 68 5639.5 69 4587.0 70 4027.5 71 3468.0 72 2983.0 73 2498.0 74 2028.0 75 1120.5 76 683.0 77 574.5 78 466.0 79 340.5 80 215.0 81 173.0 82 131.0 83 79.0 84 27.0 85 22.0 86 17.0 87 11.5 88 6.0 89 3.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 585369.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.22264083578425 #Duplication Level Percentage of deduplicated Percentage of total 1 73.07296655256869 23.546039560286957 2 6.347255539391211 4.0905067107749 3 3.227397042576706 3.1198576721226443 4 2.2354327516704013 2.8812618667849685 5 1.7022148352409954 2.7424928630657117 6 1.382588941001207 2.673040012164552 7 1.2390312922073605 2.794740221916679 8 1.1431301879760192 2.9467738780555033 9 0.949913627485687 2.754785307913942 >10 8.645995350875772 48.72848718934467 >50 0.03158771149851639 0.6886805447295662 >100 0.020344627744800763 1.1743107384701956 >500 0.0016061548219579549 0.3241559978824001 >1k 0.0 0.0 >5k 5.353849406526517E-4 1.5348674364873411 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8897 1.5198959972256816 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 639 0.10916191325471625 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 626 0.10694109185829792 No Hit GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC 614 0.10489110287698872 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.026991521587238134 0.0 2 0.0 0.0 0.0 0.09822863868773372 0.0 3 0.0 0.0 0.0 0.16468244816517444 0.0 4 0.0 0.0 0.0 0.2567611199089805 0.0 5 0.0 0.0 0.0 0.5083972673646879 0.0 6 0.0 0.0 0.0 0.8187997656179264 0.0 7 0.0 0.0 0.0 1.0595026385066513 0.0 8 0.0 0.0 0.0 1.5299751097171186 0.0 9 0.0 0.0 0.0 1.8181693940061738 0.0 10 0.0 0.0 0.0 2.311875073671479 0.0 11 0.0 0.0 0.0 2.5752986577697143 0.0 12 0.0 0.0 0.0 2.8564888130392965 0.0 13 0.0 0.0 0.0 2.9567674407083397 0.0 14 0.0 0.0 0.0 3.010921316297925 0.0 15 0.0 0.0 0.0 3.0671251808688194 0.0 16 1.7083241510910211E-4 0.0 0.0 3.1460497566492247 0.0 17 1.7083241510910211E-4 0.0 0.0 3.2480367084693587 0.0 18 1.7083241510910211E-4 0.0 0.0 3.416135804936715 0.0 19 1.7083241510910211E-4 0.0 0.0 3.508043644265412 0.0 20 1.7083241510910211E-4 0.0 0.0 3.593459851819963 0.0 21 1.7083241510910211E-4 0.0 0.0 3.6810968807709323 0.0 22 1.7083241510910211E-4 0.0 0.0 3.7981170851206674 0.0 23 1.7083241510910211E-4 0.0 0.0 3.900958199016347 0.0 24 1.7083241510910211E-4 0.0 0.0 3.987741065891771 0.0 25 1.7083241510910211E-4 0.0 0.0 4.068886463068594 0.0 26 1.7083241510910211E-4 0.0 0.0 4.148665200924545 0.0 27 1.7083241510910211E-4 0.0 0.0 4.236814727120842 0.0 28 1.7083241510910211E-4 0.0 0.0 4.325647582977575 0.0 29 1.7083241510910211E-4 0.0 0.0 4.415676265740071 0.0 30 1.7083241510910211E-4 0.0 0.0 4.550804706091371 0.0 31 1.7083241510910211E-4 0.0 0.0 4.653304155156833 0.0 32 1.7083241510910211E-4 0.0 0.0 4.750166134523694 0.0 33 1.7083241510910211E-4 0.0 0.0 4.852836416004264 0.0 34 1.7083241510910211E-4 0.0 0.0 4.963364988579853 0.0 35 1.7083241510910211E-4 0.0 0.0 5.086022662628189 0.0 36 1.7083241510910211E-4 0.0 0.0 5.187667949618104 0.0 37 1.7083241510910211E-4 0.0 0.0 5.312888109893076 0.0 38 1.7083241510910211E-4 0.0 0.0 5.446137393678176 0.0 39 1.7083241510910211E-4 0.0 0.0 5.638153028260806 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 70 0.0 45.000004 2 GAGTACG 25 3.8884507E-5 45.000004 1 GTAAGCG 25 3.8884507E-5 45.000004 1 TACGTTG 35 1.2105556E-7 45.000004 1 CCGTCGA 20 7.030447E-4 45.0 41 CGTCGAA 20 7.030447E-4 45.0 42 AACCCGA 30 2.1636697E-6 44.999996 24 CGTTTTT 4560 0.0 44.30921 1 TAACGGG 115 0.0 41.086956 3 CGACGGT 50 1.0804797E-9 40.500004 28 GCGTAAG 45 1.9255822E-8 40.0 1 CGATGAA 320 0.0 39.375 19 TGGGCGA 190 0.0 39.07895 6 TACGGGA 150 0.0 39.0 4 GGGCGAT 745 0.0 38.959732 7 AACGGGC 70 0.0 38.57143 4 ACTACGG 35 6.2430354E-6 38.57143 2 TAGTACG 35 6.2430354E-6 38.57143 1 AGGGTCC 165 0.0 38.181816 6 ACCCGCT 260 0.0 38.076927 34 >>END_MODULE