SRR1546821_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546821_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2103777
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10146	0.4822754502972511	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5080	0.24147046003449987	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	4153	0.1974068544337161	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	2876	0.13670650453921684	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2511	0.11935675691862778	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	2195	0.10433615349915891	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTA	35	1.2125747E-7	45.000004	32
TCGATAG	85	0.0	45.000004	1
TACGACC	35	1.2125747E-7	45.000004	31
GATATAC	35	1.2125747E-7	45.000004	11
ACACGAT	20	7.034624E-4	45.0	44
ACGCCGT	25	3.891915E-5	45.0	40
GACCGTT	25	3.891915E-5	45.0	44
TAAGTCG	40	6.8193913E-9	45.0	1
TCGCTAC	20	7.034624E-4	45.0	19
ACGTACT	20	7.034624E-4	45.0	30
CAATACG	25	3.891915E-5	45.0	1
TCGGTAA	20	7.034624E-4	45.0	12
TACACGA	20	7.034624E-4	45.0	34
TAATCGC	20	7.034624E-4	45.0	28
TATGCGA	30	2.1663654E-6	44.999996	19
TCACGAC	445	0.0	43.483147	25
CGACGGT	455	0.0	42.52747	28
ATTAGCG	180	0.0	42.500004	1
TAACGCC	170	0.0	42.352943	12
CGTTTTT	6745	0.0	41.997776	1