##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546820_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2039054 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.986077367249713 33.0 31.0 34.0 30.0 34.0 2 32.39654614345672 34.0 31.0 34.0 31.0 34.0 3 32.48563108186443 34.0 31.0 34.0 31.0 34.0 4 36.07977571952484 37.0 35.0 37.0 35.0 37.0 5 36.035367871571815 37.0 35.0 37.0 35.0 37.0 6 36.09163317891532 37.0 35.0 37.0 35.0 37.0 7 36.269485751726044 37.0 36.0 37.0 35.0 37.0 8 36.146555216291475 37.0 36.0 37.0 35.0 37.0 9 38.01840706523711 39.0 39.0 39.0 35.0 39.0 10 37.75592161855449 39.0 38.0 39.0 35.0 39.0 11 37.49831049104144 39.0 37.0 39.0 35.0 39.0 12 36.72981588520951 39.0 35.0 39.0 33.0 39.0 13 36.50181996160965 39.0 35.0 39.0 33.0 39.0 14 37.54710272508722 40.0 35.0 41.0 33.0 41.0 15 37.743572264393194 40.0 35.0 41.0 33.0 41.0 16 37.85266157737853 40.0 35.0 41.0 34.0 41.0 17 37.81672530496985 40.0 35.0 41.0 34.0 41.0 18 37.75951446111775 39.0 35.0 41.0 34.0 41.0 19 37.693079241648334 39.0 35.0 41.0 34.0 41.0 20 37.558280947929774 39.0 35.0 41.0 34.0 41.0 21 37.412413795809236 39.0 35.0 41.0 33.0 41.0 22 37.38577252000192 39.0 35.0 41.0 33.0 41.0 23 37.31835253014388 39.0 35.0 41.0 33.0 41.0 24 37.27868217320385 39.0 35.0 41.0 33.0 41.0 25 37.16416240079958 39.0 35.0 41.0 33.0 41.0 26 37.11184206009257 39.0 35.0 41.0 33.0 41.0 27 37.0377238660673 39.0 35.0 41.0 33.0 41.0 28 36.99249603002176 38.0 35.0 41.0 33.0 41.0 29 36.912397611833725 38.0 35.0 41.0 33.0 41.0 30 36.87310537141243 38.0 35.0 41.0 33.0 41.0 31 36.67930422637164 38.0 35.0 41.0 32.0 41.0 32 36.53569596489353 38.0 35.0 41.0 32.0 41.0 33 36.43553432130782 38.0 35.0 41.0 31.0 41.0 34 36.294207019529644 38.0 35.0 41.0 31.0 41.0 35 36.181022179893226 38.0 35.0 41.0 31.0 41.0 36 36.0451650618375 38.0 35.0 41.0 31.0 41.0 37 35.759645404192334 38.0 35.0 41.0 30.0 41.0 38 35.82142797591432 38.0 35.0 41.0 30.0 41.0 39 35.71899616194569 37.0 35.0 40.0 30.0 41.0 40 35.580715861374934 37.0 35.0 40.0 30.0 41.0 41 35.5161560213707 37.0 35.0 40.0 30.0 41.0 42 35.50186409972468 37.0 35.0 40.0 30.0 41.0 43 35.38368184462011 36.0 35.0 40.0 30.0 41.0 44 35.24232462700841 36.0 35.0 40.0 29.0 41.0 45 35.197252745635964 36.0 35.0 40.0 29.0 41.0 46 35.052708265695756 36.0 35.0 40.0 29.0 41.0 47 35.02417591687126 35.0 35.0 40.0 29.0 41.0 48 34.88375001348665 35.0 34.0 40.0 28.0 41.0 49 34.85299653662924 36.0 34.0 40.0 28.0 41.0 50 34.720804843814825 35.0 34.0 40.0 28.0 41.0 51 34.16788324389643 35.0 34.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 6.0 13 9.0 14 25.0 15 50.0 16 111.0 17 279.0 18 622.0 19 1216.0 20 2177.0 21 3224.0 22 5183.0 23 7697.0 24 11366.0 25 16962.0 26 23149.0 27 27984.0 28 29723.0 29 31311.0 30 35276.0 31 43201.0 32 54692.0 33 76156.0 34 157964.0 35 341392.0 36 129468.0 37 176099.0 38 280370.0 39 583083.0 40 251.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.273714183145714 23.08923647926931 29.2912791912328 14.34577014635218 2 30.976080084195907 25.27382796139779 30.562407861684882 13.187684092721428 3 28.919538177998227 25.019347207087208 32.43209841426465 13.62901620064991 4 26.82003517317344 27.037488953210655 31.25532722527211 14.88714864834379 5 23.56122005596713 31.320455466113206 30.228380415624105 14.889944062295553 6 21.15677171864992 41.25364016843105 26.68252042368667 10.90706768923236 7 86.76827587695078 4.3798741965637005 6.820515788203746 2.0313341382817716 8 87.84696236588144 3.5764133760067165 6.349807312606728 2.2268169455051217 9 84.19767205772874 5.019631652717388 7.868452723664994 2.9142435658888877 10 52.743281933681004 22.392687981779787 13.84588147248675 11.018148612052451 11 44.34826149773375 20.345366037387926 20.330849501778765 14.975522963099555 12 38.333168224088226 20.234236072217804 24.69743322148408 16.735162482209887 13 24.08087279689503 33.24409260372702 25.711334766023853 16.963699833354095 14 18.15508564265586 35.971926197148285 28.953671653619768 16.919316506576088 15 17.38713148352128 22.36493001166227 43.211067485216184 17.036871019600266 16 20.671742876843872 18.48141343976177 40.80465745389774 20.042186229496618 17 21.22562717809337 18.75781612453618 27.475142884886814 32.54141381248363 18 25.3084028181696 21.84419833903369 30.81399511734363 22.033403725453077 19 29.676359723675784 23.572892135274497 24.963684139802083 21.78706400124764 20 31.05905974044827 23.391386397809967 23.799958215917773 21.749595645823995 21 25.823543662894654 25.265196507792336 27.559642853990134 21.35161697532287 22 25.29677978121227 21.843953127283537 27.036851402660254 25.822415688843943 23 22.517304593208422 26.936461712146908 25.331894103834422 25.214339590810248 24 22.765606011415098 23.664699414532425 33.37763492286129 20.19205965119119 25 21.906629250623084 23.652684038774844 31.96050717636708 22.480179534234992 26 19.893882163003042 29.938883423391438 26.382920707347623 23.7843137062579 27 21.086199776955393 28.01357884587657 29.32158736355192 21.578634013616117 28 19.08600753094327 25.5630797418803 35.32083995813745 20.030072769038977 29 19.76519503652184 24.15801641349371 34.09929310356665 21.977495446417798 30 22.385576841025298 25.513056544848737 30.992999694956584 21.10836691916938 31 29.776111863638725 24.43765589337016 24.20161506267122 21.584617180319892 32 30.233824116477543 25.68362583825637 24.23005962568917 19.85249041957692 33 27.566999206494774 25.420219376240162 24.830877455918284 22.181903961346784 34 21.676914883078133 26.878787908510514 28.32666520847413 23.117631999937228 35 22.767518663066305 25.595840031700973 29.241942587101665 22.394698718131053 36 30.56221169228476 23.023715899627963 25.755031499901428 20.659040908185855 37 23.82933458358631 27.645221754794136 27.054457606321364 21.47098605529819 38 24.43078996436583 29.36361665752844 22.69822182247258 23.507371555633153 39 23.118759973987938 27.27946390826334 25.558371676277332 24.043404441471388 40 24.95627874494741 24.595130879319527 25.144258072616026 25.304332303117032 41 21.162117334803295 22.301322083672133 27.022187740001 29.514372841523567 42 24.77315460993186 24.77364503343217 24.251245920902537 26.201954435733434 43 24.062285746233304 25.077413349523848 25.634142107075142 25.22615879716771 44 22.810577846393475 27.938004584478882 27.007818331441936 22.24359923768571 45 21.0415221960772 31.147139801103847 23.783283816907254 24.028054185911703 46 24.82808204196652 27.66763410875828 26.01039501651256 21.493888832762647 47 24.214856497179575 25.70613627692057 27.069023184280557 23.0099840416193 48 25.464357491268007 23.665582176832984 28.20293135934605 22.66712897255296 49 23.392465329510646 22.38910789022753 29.454345005085692 24.764081775176138 50 21.74665310482214 28.294738638603977 26.88124002601206 23.07736823056182 51 21.423905399268484 30.76505085201275 24.517840135670756 23.29320361304801 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1843.0 1 2786.5 2 3730.0 3 11751.5 4 19773.0 5 13795.0 6 7817.0 7 8158.0 8 8499.0 9 8956.0 10 9413.0 11 9349.5 12 9286.0 13 8805.5 14 8325.0 15 7852.5 16 7380.0 17 7032.5 18 6685.0 19 6491.0 20 6297.0 21 6053.0 22 5809.0 23 6607.0 24 7405.0 25 7692.5 26 9078.0 27 10176.0 28 12095.0 29 14014.0 30 16523.0 31 19032.0 32 20917.5 33 22803.0 34 27117.0 35 31431.0 36 37056.5 37 42682.0 38 51548.0 39 60414.0 40 85578.5 41 110743.0 42 135786.5 43 160830.0 44 166704.0 45 172578.0 46 167773.5 47 162969.0 48 156776.0 49 150583.0 50 144755.0 51 138927.0 52 138226.5 53 137526.0 54 127699.0 55 117872.0 56 114243.5 57 110615.0 58 106122.0 59 101629.0 60 94610.5 61 87592.0 62 81106.5 63 74621.0 64 67630.0 65 60639.0 66 53219.5 67 45800.0 68 38663.5 69 31527.0 70 27941.5 71 24356.0 72 20616.0 73 16876.0 74 13498.5 75 7882.5 76 5644.0 77 4408.5 78 3173.0 79 2538.0 80 1903.0 81 1542.0 82 1181.0 83 688.5 84 196.0 85 174.0 86 152.0 87 108.0 88 64.0 89 79.0 90 94.0 91 65.0 92 36.0 93 21.5 94 7.0 95 6.0 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2039054.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.684858887619107 #Duplication Level Percentage of deduplicated Percentage of total 1 80.48564654310103 15.843485946797323 2 6.468128189356653 2.5464838134903403 3 2.0422328087836408 1.2060319396971595 4 1.1049515049363408 0.8700325780933694 5 0.745575329862529 0.7338272579216975 6 0.5281976887241416 0.6238498180380775 7 0.42863650071351694 0.59063543214399 8 0.3574983990460759 0.5629844430217399 9 0.303548543273012 0.5377779215884424 >10 4.391566486988507 22.603025062166445 >50 2.435607944767955 34.10278588653056 >100 0.70360470839245 18.303832422847403 >500 0.003034959192086073 0.4350765289990937 >1k 0.0015174795960430365 0.46609296996103844 >5k 0.0 0.0 >10k+ 2.5291326600717273E-4 0.574077978703347 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11531 0.5655073382068351 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2679 0.1313844557329036 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027905097167608115 0.0 2 0.0 0.0 0.0 0.06983630644406671 0.0 3 0.0 0.0 0.0 0.10656902661724506 0.0 4 0.0 0.0 0.0 0.15644509659871686 0.0 5 0.0 0.0 0.0 0.2595811587137957 0.0 6 0.0 0.0 0.0 0.45987011624017804 0.0 7 0.0 0.0 0.0 0.6068500392829224 0.0 8 0.0 0.0 0.0 0.9665266344098783 0.0 9 0.0 0.0 0.0 1.1662761260859202 0.0 10 0.0 0.0 0.0 1.4567049229691809 0.0 11 0.0 0.0 0.0 1.6882828998153065 0.0 12 0.0 0.0 0.0 1.8909258901431742 0.0 13 0.0 0.0 0.0 1.9772404261976386 0.0 14 0.0022069057513925574 0.0 0.0 2.0137769769706932 0.0 15 0.0022069057513925574 0.0 0.0 2.053991703996069 0.0 16 0.002255948101423503 0.0 0.0 2.139374435399945 0.0 17 0.018881304761914103 0.0 0.0 2.2353012720604752 0.0 18 0.018881304761914103 0.0 0.0 2.3822811951032192 0.0 19 0.018881304761914103 0.0 0.0 2.4555504660494525 0.0 20 0.01893034711194505 0.0 0.0 2.5288197369956853 0.0 21 0.01893034711194505 0.0 0.0 2.6261197594570818 0.0 22 0.01893034711194505 0.0 0.0 2.72871635572182 0.0 23 0.01893034711194505 0.0 0.0 2.837933669240736 0.0 24 0.01893034711194505 0.0 0.0 2.923855866494953 0.0 25 0.01893034711194505 0.0 0.0 2.993348876488803 0.0 26 0.023147989214606382 0.0 0.0 3.0730917376391207 0.0 27 0.023147989214606382 0.0 0.0 3.1584254266929666 0.0 28 0.023147989214606382 0.0 0.0 3.2387567960436554 0.0 29 0.023147989214606382 0.0 0.0 3.3345365056540923 0.0 30 0.023147989214606382 0.0 0.0 3.4519929339782074 0.0 31 0.023147989214606382 0.0 0.0 3.549047744689449 0.0 32 0.023147989214606382 0.0 0.0 3.644876496649917 0.0 33 0.023147989214606382 0.0 0.0 3.748061601115027 0.0 34 0.023147989214606382 0.0 0.0 3.8588973121849643 0.0 35 0.023147989214606382 0.0 0.0 3.9907231490681463 0.0 36 0.023147989214606382 0.0 0.0 4.099695250836907 0.0 37 0.023147989214606382 0.0 0.0 4.213424460558671 0.0 38 0.023147989214606382 0.0 0.0 4.367466482005871 0.0 39 0.023147989214606382 0.0 0.0 4.6492147829336545 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 30 2.1663327E-6 45.000004 1 TGTTACG 70 0.0 45.0 1 TCGTATA 25 3.891872E-5 45.0 18 CGGTCTA 305 0.0 44.999996 31 GCGATAT 210 0.0 42.857143 9 CGTTTTT 7315 0.0 42.662342 1 TTACGAG 50 1.0822987E-9 40.5 1 ATCGGTA 50 1.0822987E-9 40.5 27 ATAGGGC 560 0.0 39.776783 4 TACGTAG 125 0.0 39.6 1 GGCGATA 665 0.0 39.586468 8 ACGTTAG 105 0.0 38.57143 1 TACGGGT 135 0.0 38.333332 4 TCACGAC 370 0.0 38.31081 25 GTTTACG 65 9.094947E-12 38.076927 1 CTCACGA 380 0.0 37.894737 24 ATAGGGT 620 0.0 37.741936 4 TAGCCGT 240 0.0 37.500004 44 GTAACGA 30 1.14023176E-4 37.500004 2 GTTGATC 1050 0.0 37.5 16 >>END_MODULE