##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546817_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4535386 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.554141367460232 31.0 31.0 33.0 30.0 34.0 2 31.929369848564157 31.0 31.0 34.0 30.0 34.0 3 31.912443174627253 33.0 31.0 34.0 30.0 34.0 4 35.6713448425338 37.0 35.0 37.0 33.0 37.0 5 35.61394708190218 37.0 35.0 37.0 33.0 37.0 6 35.6766187045601 37.0 35.0 37.0 33.0 37.0 7 36.051299271991404 37.0 35.0 37.0 35.0 37.0 8 35.93990743015038 37.0 35.0 37.0 35.0 37.0 9 37.688663103868116 39.0 38.0 39.0 35.0 39.0 10 37.353449739448855 39.0 37.0 39.0 34.0 39.0 11 37.050141487405924 39.0 37.0 39.0 33.0 39.0 12 36.30880370491067 38.0 35.0 39.0 32.0 39.0 13 36.05525306997023 38.0 35.0 39.0 32.0 39.0 14 37.07939324238334 39.0 35.0 41.0 32.0 41.0 15 37.27660997321948 39.0 35.0 41.0 33.0 41.0 16 37.392283038312506 39.0 35.0 41.0 33.0 41.0 17 37.30051995574357 39.0 35.0 41.0 33.0 41.0 18 37.1544556516248 39.0 35.0 41.0 32.0 41.0 19 37.04201538744442 38.0 35.0 41.0 32.0 41.0 20 36.859745785694976 38.0 35.0 41.0 32.0 41.0 21 36.71248026077604 38.0 35.0 41.0 32.0 41.0 22 36.64419544444508 38.0 35.0 41.0 32.0 41.0 23 36.55932130142837 38.0 35.0 40.0 32.0 41.0 24 36.510433070084886 38.0 35.0 40.0 32.0 41.0 25 36.39777540434265 37.0 35.0 40.0 31.0 41.0 26 36.33315532569885 37.0 35.0 40.0 31.0 41.0 27 36.23215377919322 37.0 35.0 40.0 31.0 41.0 28 36.21240772009262 37.0 35.0 40.0 31.0 41.0 29 36.132995295218535 37.0 35.0 40.0 31.0 41.0 30 36.11660308516188 37.0 35.0 40.0 31.0 41.0 31 35.926947563007865 37.0 35.0 40.0 30.0 41.0 32 35.62200659436705 37.0 35.0 40.0 30.0 41.0 33 35.43791443550781 37.0 35.0 40.0 29.0 41.0 34 35.14925829907311 37.0 34.0 40.0 27.0 41.0 35 34.95422572632186 37.0 34.0 40.0 25.0 41.0 36 34.80873888132124 37.0 34.0 40.0 24.0 41.0 37 34.510051845642245 36.0 34.0 40.0 23.0 41.0 38 34.619384546320866 36.0 34.0 40.0 24.0 41.0 39 34.533314694713965 36.0 34.0 40.0 23.0 41.0 40 34.38434567642093 36.0 34.0 40.0 23.0 41.0 41 34.32873894305799 36.0 34.0 40.0 23.0 41.0 42 34.32180149605789 36.0 34.0 40.0 23.0 41.0 43 34.22156438283313 36.0 34.0 40.0 23.0 41.0 44 34.08796053963213 35.0 34.0 40.0 23.0 41.0 45 34.07026392020437 35.0 34.0 40.0 23.0 41.0 46 33.89235403557713 35.0 33.0 40.0 23.0 41.0 47 33.77445403764972 35.0 33.0 40.0 22.0 41.0 48 33.63080055369047 35.0 33.0 40.0 21.0 41.0 49 33.69118416822736 35.0 33.0 40.0 22.0 41.0 50 33.540209366964575 35.0 33.0 40.0 21.0 41.0 51 32.95938250900805 35.0 32.0 39.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 7.0 12 12.0 13 22.0 14 53.0 15 116.0 16 318.0 17 867.0 18 2035.0 19 4120.0 20 7450.0 21 12353.0 22 19372.0 23 29155.0 24 43250.0 25 65322.0 26 86903.0 27 96483.0 28 95413.0 29 97819.0 30 109845.0 31 129535.0 32 161602.0 33 213418.0 34 385190.0 35 696094.0 36 310811.0 37 369393.0 38 551240.0 39 1046758.0 40 423.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.376286825421253 24.060091026430825 29.2987631041768 17.26485904397112 2 33.557871369713624 25.603730310937152 28.605282990246035 12.23311532910319 3 27.186418090984983 23.709889301594174 35.80202434809298 13.301668259327872 4 25.27756182163988 26.428930194695667 34.27456891210583 14.018939071558629 5 22.959192448007734 30.04075066598521 33.10258487370204 13.897472012305018 6 20.38000734667347 38.693222583480214 30.16572349078998 10.761046579056337 7 82.17803291715413 4.693801145040356 11.079564120892908 2.048601816912607 8 83.12225243893243 4.256043476784556 10.384253953246759 2.2374501310362556 9 79.02903964513716 5.8553560821504504 12.0346096230839 3.080994649628499 10 48.81771915334219 22.691762068322298 18.00825773153597 10.482261046799545 11 42.72366232995383 21.50086012524623 22.913992326121747 12.86148521867819 12 37.454408511205 21.245843242449485 26.92143513253337 14.378313113812144 13 21.749063916500162 36.25451064143162 27.709548867505436 14.286876574562783 14 15.659615300660187 39.690910542123646 29.71416324872899 14.935310908487171 15 14.886847558289414 24.11463985645323 46.88802673024964 14.11048585500771 16 15.517929455177576 21.027273092080804 45.87574243956303 17.57905501317859 17 16.67743385017284 20.755080162967385 31.163808328552413 31.403677658307366 18 20.658418048651207 24.82664099593728 34.73430927378618 19.780631681625334 19 26.926241779641245 26.28803810745105 27.441809804060778 19.34391030884692 20 29.051771999119808 24.840708155821797 27.158570406135222 18.948949438923172 21 21.954779593181264 27.86186225384124 30.22743819379431 19.955919959183188 22 21.688870583451994 25.901213259466783 28.64620563718281 23.763710519898417 23 19.9713761959842 29.72648855025791 27.614408123145417 22.68772713061248 24 20.45153378345305 25.51152206228974 36.21898996028122 17.817954193975993 25 17.70599018473841 26.66562449149863 35.1629828199849 20.46540250377807 26 17.021616241704677 34.35923645749226 29.234270247339477 19.384877053463587 27 19.133740766497052 31.9749851501063 31.15871504652526 17.732559036871393 28 16.055391977661877 29.067228235920822 38.289618568298266 16.58776121811903 29 16.44170970232743 25.85438152342491 37.7107924220783 19.993116352169363 30 18.516196857334748 28.966597330414658 33.422645834334716 19.094559977915882 31 26.025392326033554 26.915967020227168 27.402915650398885 19.6557250033404 32 26.57641488508365 27.8720267690556 28.16525429147596 17.386304054384787 33 24.389059718401036 28.75536944374746 27.491838621894587 19.363732215956922 34 19.132197347700945 28.950744214494645 29.810891509565007 22.106166928239404 35 19.97106751222498 26.801048466437035 31.257956875114928 21.969927146223057 36 26.216842403270636 26.691377536553667 27.425008588023157 19.666771472152536 37 20.678394297640818 30.52088620461412 29.96157328174493 18.839146216000138 38 20.15332322320526 31.60515995771914 25.432631312968727 22.80888550610687 39 20.8918491171424 30.16667159090759 28.124971060897575 20.81650823105244 40 22.326853767242742 27.832912126994263 26.70319571476386 23.137038390999134 41 17.773018658169338 26.50266151546969 28.447258954364635 27.27706087199634 42 22.1073575655964 27.84084970937424 25.456510206628497 24.59528251840086 43 22.342993518082032 28.79651257908368 26.32924738930711 22.531246513527183 44 20.182714326851123 32.340047793065466 26.739951130951145 20.737286749132267 45 17.902621739362427 35.3592615931698 24.1463681371332 22.591748530334574 46 22.02873140235473 32.47809557995725 25.932566709867693 19.56060630782033 47 22.134587882927715 28.436014045992998 27.626270399035498 21.80312767204379 48 22.786153152124207 25.411177791702844 29.72972972972973 22.072939326443215 49 20.415505978983926 25.69450538498818 30.378340454373674 23.51164818165422 50 18.728372844119555 31.76854186170703 27.996029444902813 21.5070558492706 51 18.908533915305114 32.59283774302782 25.215935313995324 23.282693027671737 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4793.0 1 6412.0 2 8031.0 3 44292.0 4 80553.0 5 55836.5 6 31120.0 7 32463.0 8 33806.0 9 36247.5 10 38689.0 11 39811.0 12 40933.0 13 40980.0 14 41027.0 15 39199.5 16 37372.0 17 35240.0 18 33108.0 19 30717.5 20 28327.0 21 27809.5 22 27292.0 23 26558.5 24 25825.0 25 29519.0 26 37548.0 27 41883.0 28 52197.5 29 62512.0 30 68243.5 31 73975.0 32 82659.0 33 91343.0 34 93713.0 35 96083.0 36 104627.5 37 113172.0 38 138394.0 39 163616.0 40 223917.5 41 284219.0 42 338261.5 43 392304.0 44 407071.0 45 421838.0 46 420427.0 47 419016.0 48 397500.5 49 375985.0 50 350504.0 51 325023.0 52 293897.5 53 262772.0 54 238129.0 55 213486.0 56 197020.5 57 180555.0 58 170652.0 59 160749.0 60 147667.0 61 134585.0 62 114781.0 63 94977.0 64 77844.0 65 60711.0 66 47891.0 67 35071.0 68 29751.0 69 24431.0 70 21432.5 71 18434.0 72 15064.0 73 11694.0 74 8914.0 75 5034.0 76 3934.0 77 2843.0 78 1752.0 79 1157.5 80 563.0 81 381.5 82 200.0 83 183.5 84 167.0 85 118.5 86 70.0 87 46.5 88 23.0 89 16.5 90 10.0 91 9.5 92 9.0 93 4.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4535386.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.86860136617706 #Duplication Level Percentage of deduplicated Percentage of total 1 80.49117047596103 16.79738150159831 2 8.310776028098271 3.4686854394792626 3 2.796204300044279 1.750586186280426 4 1.4036246491627369 1.1716673308446914 5 0.8560735279437758 0.8932528597397746 6 0.5853534721692573 0.7329304961404707 7 0.4520444563663676 0.6603474891789961 8 0.3460652320530788 0.5777517899527409 9 0.28505771708223954 0.5353880277727563 >10 2.543275096281893 11.68538054671661 >50 0.7509010668521902 11.378348278379944 >100 1.1637609307261634 45.78903518609898 >500 0.011956607435321277 1.6627234018473256 >1k 0.0035229289764785276 1.4046508358988183 >5k 0.0 0.0 >10k+ 2.1351084705930473E-4 1.491870630070807 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54990 1.2124657085416763 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11975 0.2640348583339985 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.4097679888768014E-5 0.0 0.0 0.037527125585341575 0.0 2 4.4097679888768014E-5 0.0 0.0 0.1791909222280088 0.0 3 4.4097679888768014E-5 0.0 0.0 0.29097854074603574 0.0 4 4.4097679888768014E-5 0.0 0.0 0.4197878637011271 0.0 5 4.4097679888768014E-5 0.0 0.0 0.7841449437820728 0.0 6 4.4097679888768014E-5 0.0 0.0 1.2421434471068173 0.0 7 4.4097679888768014E-5 0.0 0.0 1.5634611916163255 0.0 8 4.4097679888768014E-5 0.0 0.0 2.1807846123791887 0.0 9 4.4097679888768014E-5 0.0 0.0 2.5095989624697874 0.0 10 4.4097679888768014E-5 0.0 0.0 3.0194563373437235 0.0 11 4.4097679888768014E-5 0.0 0.0 3.464446025101281 0.0 12 4.4097679888768014E-5 0.0 0.0 3.8370273224814824 0.0 13 4.4097679888768014E-5 0.0 0.0 3.9982704889947627 0.0 14 4.4097679888768014E-5 0.0 0.0 4.064505204187692 0.0 15 4.4097679888768014E-5 0.0 0.0 4.149878312452347 0.0 16 4.4097679888768014E-5 0.0 0.0 4.3162588586726685 0.0 17 4.4097679888768014E-5 0.0 0.0 4.517278132445617 0.0 18 4.4097679888768014E-5 0.0 0.0 4.804398126201386 0.0 19 4.4097679888768014E-5 0.0 0.0 4.950581935032652 0.0 20 4.4097679888768014E-5 0.0 0.0 5.098970627858357 0.0 21 4.4097679888768014E-5 0.0 0.0 5.296197501160871 0.0 22 4.4097679888768014E-5 0.0 0.0 5.498208972731318 0.0 23 4.4097679888768014E-5 0.0 0.0 5.724011142601754 0.0 24 4.4097679888768014E-5 0.0 0.0 5.899806543478328 0.0 25 4.4097679888768014E-5 0.0 0.0 6.038692186288003 0.0 26 4.4097679888768014E-5 0.0 0.0 6.183310527483218 0.0 27 4.4097679888768014E-5 0.0 0.0 6.317235181305406 0.0 28 4.4097679888768014E-5 0.0 0.0 6.472392867994036 0.0 29 4.4097679888768014E-5 0.0 0.0 6.633239155388318 0.0 30 4.4097679888768014E-5 0.0 0.0 6.8511037428787755 0.0 31 4.4097679888768014E-5 0.0 0.0 7.039863861642647 0.0 32 4.4097679888768014E-5 0.0 0.0 7.206597189302079 0.0 33 4.4097679888768014E-5 0.0 0.0 7.365613422980977 0.0 34 4.4097679888768014E-5 0.0 0.0 7.531376601682855 0.0 35 4.4097679888768014E-5 0.0 0.0 7.727875863267206 0.0 36 4.4097679888768014E-5 0.0 0.0 7.91509256323497 0.0 37 4.4097679888768014E-5 0.0 0.0 8.100655600206906 0.0 38 4.4097679888768014E-5 0.0 0.0 8.282801066987462 0.0 39 4.4097679888768014E-5 0.0 0.0 8.466578147923903 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCTAT 30 2.166922E-6 45.000004 12 CGTTTTT 32695 0.0 43.947086 1 CGGTCTA 410 0.0 41.707317 31 CTCACGA 425 0.0 40.764706 24 GACCGAT 1695 0.0 40.35398 9 CGACGGT 425 0.0 40.235294 28 TCTAGCG 80 0.0 39.375 1 TACGCAT 40 3.4612276E-7 39.375 25 GGGACCG 2130 0.0 38.97887 7 ACGGTCT 445 0.0 38.932587 30 TACCGGT 110 0.0 38.863636 20 TATCGCT 35 6.252363E-6 38.571426 1 TACGTTG 175 0.0 38.571426 1 GTTTTTT 38900 0.0 38.510284 2 AGGGCGA 3270 0.0 38.394493 6 TATTCCG 65 9.094947E-12 38.076927 1 ATTAGCG 405 0.0 37.777775 1 GCGATCG 155 0.0 37.741936 9 TCACGAC 455 0.0 37.582417 25 GGCGATA 1830 0.0 37.5 8 >>END_MODULE