SRR1546814_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546814_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1958618
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8119	0.4145269776954975	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2914	0.14877837332241406	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAACG	35	1.2125201E-7	45.000004	1
TATTACG	45	3.8562575E-10	45.0	1
AACGATC	20	7.034504E-4	45.0	17
ACCGTAT	25	3.8918155E-5	45.0	28
AGTCGAC	20	7.034504E-4	45.0	41
ACGCGTA	25	3.8918155E-5	45.0	17
TAATGCG	80	0.0	42.1875	1
CGTTTTT	5625	0.0	42.04	1
GTATGCG	145	0.0	41.89655	1
CGGTCTA	165	0.0	40.90909	31
AGTACGG	270	0.0	40.833332	2
TATAGCG	140	0.0	40.178574	1
CGTACAC	45	1.929584E-8	40.0	42
ATAGGGC	760	0.0	39.078945	4
CGAACTA	35	6.2505424E-6	38.57143	45
CGAGGGT	245	0.0	38.57143	4
TAGTACG	160	0.0	37.96875	1
GCGATAT	155	0.0	37.74194	9
CCGTATC	30	1.1402155E-4	37.499996	29
GGCACCG	620	0.0	37.379036	8