SRR1546812_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546812_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1964267
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7551	0.38441820791165354	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6105	0.3108029611045749	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2223	0.1131719873112973	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2193	0.11164470003314213	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2089	0.10635010413553758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTA	95	0.0	45.000004	23
TCCGCGA	20	7.034508E-4	45.000004	45
TACTTCG	20	7.034508E-4	45.000004	29
GATCGAC	20	7.034508E-4	45.000004	9
TCCGATT	20	7.034508E-4	45.000004	28
TAGACGC	20	7.034508E-4	45.000004	23
ACTAGTC	20	7.034508E-4	45.000004	12
CTAACGA	20	7.034508E-4	45.000004	18
TGCGCAT	20	7.034508E-4	45.000004	1
CTACGTT	40	6.8193913E-9	45.000004	30
AATTACG	20	7.034508E-4	45.000004	1
ACGTAAG	80	0.0	45.000004	1
ATCGATC	20	7.034508E-4	45.000004	36
CGAATCG	35	1.2125201E-7	45.0	35
CGTACAC	25	3.8918202E-5	45.0	17
CCGAATA	25	3.8918202E-5	45.0	12
ACGTAGT	25	3.8918202E-5	45.0	44
CGACTCA	35	1.2125201E-7	45.0	34
TATCGCG	50	2.1827873E-11	45.0	1
TGGTCGA	35	1.2125201E-7	45.0	34