SRR1546811_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546811_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2209009
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56710	2.5672145292300756	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3002	0.1358980429685891	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2902	0.13137112614751684	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2835	0.12833809187739842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTA	25	3.8919785E-5	45.0	2
GACCGTA	20	7.034701E-4	45.0	9
TAAGTCG	25	3.8919785E-5	45.0	1
ATCACGT	20	7.034701E-4	45.0	28
CTACGCG	25	3.8919785E-5	45.0	1
CGGTCTA	335	0.0	45.0	31
ACTCCGT	20	7.034701E-4	45.0	34
TGTCGAC	40	6.8193913E-9	45.0	25
CGCTTAT	20	7.034701E-4	45.0	22
CGTTTTT	24725	0.0	44.25379	1
TGTTGCG	170	0.0	42.352943	1
TCTAGCG	60	3.6379788E-12	41.249996	1
TCGATAG	105	0.0	40.714287	1
GGGCGTA	50	1.0822987E-9	40.5	7
TCGTAAG	45	1.9297659E-8	40.0	1
TCACGAC	400	0.0	39.9375	25
TGCGGGC	475	0.0	39.789474	4
CGACGGT	385	0.0	39.74026	28
GTTTTTT	28030	0.0	39.62986	2
TACGGGT	125	0.0	39.6	4