##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546810_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4687361 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62159005888388 31.0 31.0 33.0 30.0 34.0 2 31.989516702468617 33.0 31.0 34.0 30.0 34.0 3 32.052518890693506 33.0 31.0 34.0 30.0 34.0 4 35.753427141626176 37.0 35.0 37.0 35.0 37.0 5 35.68682762006169 37.0 35.0 37.0 33.0 37.0 6 35.737179833172654 37.0 35.0 37.0 33.0 37.0 7 36.074804991550685 37.0 35.0 37.0 35.0 37.0 8 35.96070112799078 37.0 35.0 37.0 35.0 37.0 9 37.73261628451489 39.0 38.0 39.0 35.0 39.0 10 37.41696255099618 39.0 37.0 39.0 35.0 39.0 11 37.102826302475954 39.0 37.0 39.0 33.0 39.0 12 36.19090614100343 37.0 35.0 39.0 33.0 39.0 13 35.82533178050507 37.0 35.0 39.0 32.0 39.0 14 36.71041082604903 38.0 35.0 41.0 31.0 41.0 15 36.975150196453825 38.0 35.0 41.0 32.0 41.0 16 37.115172268575 38.0 35.0 41.0 33.0 41.0 17 37.03357923573627 38.0 35.0 41.0 32.0 41.0 18 36.96252432872143 38.0 35.0 41.0 32.0 41.0 19 36.936779778643036 38.0 35.0 41.0 32.0 41.0 20 36.81034637613787 38.0 35.0 41.0 32.0 41.0 21 36.65949070276431 38.0 35.0 41.0 32.0 41.0 22 36.60152183712754 38.0 35.0 41.0 32.0 41.0 23 36.528301105888794 38.0 35.0 40.0 32.0 41.0 24 36.50779596450967 38.0 35.0 40.0 32.0 41.0 25 36.41512185641345 38.0 35.0 40.0 31.0 41.0 26 36.35686796899151 37.0 35.0 40.0 31.0 41.0 27 36.251202328986395 37.0 35.0 40.0 31.0 41.0 28 36.2584074493089 37.0 35.0 40.0 31.0 41.0 29 36.17510385907977 37.0 35.0 40.0 31.0 41.0 30 36.208435620810945 37.0 35.0 40.0 31.0 41.0 31 36.06623471074662 37.0 35.0 40.0 31.0 41.0 32 35.88524587715774 37.0 35.0 40.0 30.0 41.0 33 35.79314885284065 37.0 35.0 40.0 30.0 41.0 34 35.6219239354511 37.0 35.0 40.0 30.0 41.0 35 35.52439784347739 37.0 35.0 40.0 30.0 41.0 36 35.4145006113248 37.0 35.0 40.0 29.0 41.0 37 35.1182456397107 36.0 34.0 40.0 27.0 41.0 38 35.20734609516954 36.0 34.0 40.0 29.0 41.0 39 35.14495875184352 36.0 34.0 40.0 28.0 41.0 40 34.99798138014119 36.0 34.0 40.0 27.0 41.0 41 34.960457067420236 36.0 34.0 40.0 27.0 41.0 42 34.96705160963707 36.0 34.0 40.0 27.0 41.0 43 34.86231549052868 35.0 34.0 40.0 27.0 41.0 44 34.73895033900739 35.0 34.0 40.0 27.0 41.0 45 34.72458148625634 35.0 34.0 40.0 27.0 41.0 46 34.56120000145071 35.0 34.0 40.0 27.0 41.0 47 34.44340002828884 35.0 34.0 40.0 26.0 41.0 48 34.337775776177686 35.0 34.0 40.0 26.0 41.0 49 34.39452071218752 35.0 34.0 40.0 26.0 41.0 50 34.253193854708435 35.0 34.0 39.0 26.0 41.0 51 33.64471394458417 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 14.0 12 11.0 13 27.0 14 58.0 15 160.0 16 333.0 17 882.0 18 1840.0 19 3848.0 20 6457.0 21 10437.0 22 16284.0 23 23471.0 24 33789.0 25 47439.0 26 62995.0 27 74682.0 28 82372.0 29 92612.0 30 109804.0 31 134955.0 32 170876.0 33 231452.0 34 443569.0 35 790643.0 36 305469.0 37 392292.0 38 584541.0 39 1065783.0 40 261.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.90754413837552 22.84353605365578 29.87064576421573 13.378274043752977 2 31.023725290200606 24.770398524884257 30.624566787153796 13.58130939776134 3 29.62101702855829 25.27300542885432 31.094639393040136 14.011338149547262 4 26.468688884854398 26.44238410482999 31.29558401838476 15.793342991930853 5 23.544996854306717 31.11191990546493 29.654063341824966 15.689019898403386 6 22.14655538585571 39.111005105004715 27.724875468307218 11.017564040832358 7 85.52744284043837 4.822777678100748 7.226219614832312 2.4235598666285783 8 86.91609201851533 3.952330533108075 6.750045494682403 2.3815319536942003 9 83.1509457027099 4.970110046996594 8.321590762904755 3.557353487388746 10 54.2160076853479 21.072624873569584 13.467599359212997 11.24376808186952 11 46.79714235792805 20.3013380023429 19.52657369466529 13.374945945063757 12 41.32523609766775 20.912364121304076 23.117698850163237 14.644700930864937 13 23.279623651773353 36.42655216869365 24.664091372522833 15.629732807010171 14 16.5002012859688 39.259553509960085 28.507981356673827 15.732263847397288 15 15.366215659515023 23.165166924416532 46.41012288151051 15.058494534557932 16 18.325983426495206 19.09503023129646 43.774140715852695 18.80484562635564 17 19.703261600717333 18.53296556420553 28.436469902787522 33.32730293228962 18 23.129155189881896 23.41727040012493 32.58016611052573 20.873408299467442 19 29.20592205294194 24.26064474231876 25.497396082785173 21.036037121954124 20 31.17163367617728 24.291835000547216 24.93475539861342 19.601775924662086 21 24.874273605126636 25.92879020839231 28.81429443987779 20.38264174660326 22 23.863064952752733 23.840941630055802 27.303358968937957 24.992634448253508 23 21.555540526961757 27.85345528112727 26.15497291546352 24.43603127644745 24 22.115023784171946 24.35528221530196 34.470078152717484 19.059615847808605 25 19.1323646717204 24.59437197177687 34.170975950006834 22.102287406495893 26 18.342623919941307 31.837082742293582 27.75730309656116 22.062990241203952 27 19.71646732564443 31.26974858561139 29.622915751528417 19.39086833721576 28 17.026168882661267 28.039935477553364 36.18601170253369 18.747883937251686 29 17.403822748023888 25.590860187640764 35.74226521063771 21.263051853697633 30 20.111785714819064 28.137261030247085 32.161807038118035 19.589146216815816 31 28.667026072879814 26.24412755919589 24.88097247043699 20.207873897487307 32 30.516744923209455 26.281718007211307 25.669518520122516 17.532018549456723 33 27.772407544458382 26.99433647205752 25.556875179872 19.676380803612094 34 21.02903958112038 27.85345528112727 28.768639752730802 22.34886538502155 35 20.44357155337513 26.776644683437013 29.69052308964468 23.089260673543173 36 29.51517922344791 24.42666566539253 26.655937104054928 19.402218007104636 37 22.543452488511125 29.3552598146377 28.676519687730472 19.424768009120697 38 21.96562202057832 30.9595740545693 24.01592281883132 23.058881106021065 39 21.413968328874176 28.860162466684347 27.438040296021576 22.2878289084199 40 23.3771838780926 25.769148141139546 25.934870388689923 24.91879759207793 41 19.594565044168778 23.991132750389824 27.829049224072993 28.58525298136841 42 23.340852134068616 25.325508319073354 25.513609896912143 25.820029649945887 43 22.953021966944725 26.16792263279914 25.98018373238161 24.898871667874527 44 21.32148558645259 29.7382258375235 27.174715154220042 21.765573421803868 45 18.870020892352862 33.89226901875064 23.811244749444306 23.4264653394522 46 23.1210056148865 30.19400468621896 26.293857033840577 20.39113266505396 47 22.570439955446144 27.647881185170075 27.30600438071657 22.47567447866721 48 23.572026989173654 24.563651060799458 29.621038362524242 22.24328358750265 49 22.495067053721698 23.141294216511167 30.73955686365953 23.624081866107602 50 20.63425454109466 30.459633896343806 27.26133105600358 21.644780506557954 51 19.080992481697056 32.458370498879866 24.948601142519212 23.51203587690387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3527.0 1 6098.5 2 8670.0 3 22479.0 4 36288.0 5 26035.0 6 15782.0 7 16673.0 8 17564.0 9 18616.5 10 19669.0 11 19733.5 12 19798.0 13 18812.0 14 17826.0 15 17992.5 16 18159.0 17 16997.0 18 15835.0 19 16015.0 20 16195.0 21 16890.0 22 17585.0 23 19229.0 24 20873.0 25 23821.0 26 31037.5 27 35306.0 28 41126.0 29 46946.0 30 53266.5 31 59587.0 32 73500.0 33 87413.0 34 97038.5 35 106664.0 36 117877.5 37 129091.0 38 148021.5 39 166952.0 40 232162.0 41 297372.0 42 360475.5 43 423579.0 44 430288.5 45 436998.0 46 425542.5 47 414087.0 48 384524.5 49 354962.0 50 335082.5 51 315203.0 52 302748.5 53 290294.0 54 269494.0 55 248694.0 56 233035.0 57 217376.0 58 210468.0 59 203560.0 60 190535.0 61 177510.0 62 157081.0 63 136652.0 64 120042.5 65 103433.0 66 86122.0 67 68811.0 68 55228.0 69 41645.0 70 35999.0 71 30353.0 72 25149.5 73 19946.0 74 15339.5 75 8160.5 76 5588.0 77 4016.5 78 2445.0 79 1645.0 80 845.0 81 666.5 82 488.0 83 317.5 84 147.0 85 107.5 86 68.0 87 52.0 88 36.0 89 24.5 90 13.0 91 12.5 92 12.0 93 11.0 94 10.0 95 5.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4687361.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.913828313408798 #Duplication Level Percentage of deduplicated Percentage of total 1 80.75059786405635 12.850511506137078 2 8.896632009846476 2.831589487445478 3 2.8433797355520913 1.3574717082420509 4 1.2830233539057914 0.8167125350460279 5 0.7422222695075493 0.5905798883665888 6 0.48154202525450907 0.45979062693548534 7 0.3461535300558444 0.38560394931723707 8 0.2440620059825975 0.31071686888265665 9 0.20807986926518834 0.298021258346648 >10 1.7696683141581349 6.176297887103137 >50 0.62807279292072 7.400043581814042 >100 1.7731871552091758 61.95871195087081 >500 0.02876570629494781 2.9084749249264727 >1k 0.004341993403010991 0.946207143622837 >5k 0.0 0.0 >10k+ 2.713745876881869E-4 0.7092666829433895 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21277 0.45392279365724125 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11570 0.246833986117135 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.266793191307433E-5 0.0 0.0 0.042454592253508956 0.0 2 4.266793191307433E-5 0.0 0.0 0.1530285378062411 0.0 3 4.266793191307433E-5 0.0 0.0 0.2167530941184176 0.0 4 4.266793191307433E-5 0.0 0.0 0.3306764723263261 0.0 5 4.266793191307433E-5 0.0 0.0 0.5860013768941629 0.0 6 4.266793191307433E-5 0.0 0.0 0.8312993174624271 0.0 7 4.266793191307433E-5 0.0 0.0 1.0064298439996406 0.0 8 4.266793191307433E-5 0.0 0.0 1.3737794038052542 0.0 9 4.266793191307433E-5 0.0 0.0 1.5285359928539748 0.0 10 4.266793191307433E-5 0.0 0.0 1.8218140228584911 0.0 11 6.400189786961149E-5 0.0 0.0 2.1234976354498833 0.0 12 6.400189786961149E-5 0.0 0.0 2.3788012060517634 0.0 13 6.400189786961149E-5 0.0 0.0 2.4780681496475307 0.0 14 6.400189786961149E-5 0.0 0.0 2.518773356692604 0.0 15 6.400189786961149E-5 0.0 0.0 2.5824765790388238 0.0 16 6.400189786961149E-5 0.0 0.0 2.7171579061224427 0.0 17 6.400189786961149E-5 0.0 0.0 2.87193582913712 0.0 18 6.400189786961149E-5 0.0 0.0 3.090736983987365 0.0 19 6.400189786961149E-5 0.0 0.0 3.201737608859228 0.0 20 6.400189786961149E-5 0.0 0.0 3.3189677517904 0.0 21 6.400189786961149E-5 0.0 0.0 3.47212429339238 0.0 22 8.533586382614865E-5 0.0 0.0 3.6267955465772745 0.0 23 8.533586382614865E-5 0.0 0.0 3.793307150868047 0.0 24 8.533586382614865E-5 0.0 0.0 3.918409527237181 0.0 25 8.533586382614865E-5 0.0 0.0 4.021943264024256 0.0 26 8.533586382614865E-5 0.0 0.0 4.131002497994074 0.0 27 8.533586382614865E-5 0.0 0.0 4.247272612457201 0.0 28 8.533586382614865E-5 0.0 0.0 4.361451998256588 0.0 29 8.533586382614865E-5 0.0 0.0 4.4983947257316 0.0 30 8.533586382614865E-5 0.0 0.0 4.648329838474144 0.0 31 8.533586382614865E-5 0.0 0.0 4.7879606456596795 0.0 32 8.533586382614865E-5 0.0 0.0 4.910289606454463 0.0 33 8.533586382614865E-5 0.0 0.0 5.036437347155467 0.0 34 8.533586382614865E-5 0.0 0.0 5.178884237847266 0.0 35 8.533586382614865E-5 0.0 0.0 5.351625360197348 0.0 36 8.533586382614865E-5 0.0 0.0 5.497976366659192 0.0 37 8.533586382614865E-5 0.0 0.0 5.642663323776428 0.0 38 8.533586382614865E-5 0.0 0.0 5.816044465105206 0.0 39 8.533586382614865E-5 0.0 0.0 6.06787059925617 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTACA 30 2.1669384E-6 45.000004 37 AATGCGC 40 6.8230293E-9 45.000004 20 TACGCTA 30 2.1669384E-6 45.000004 29 ACGATAC 40 6.8230293E-9 45.000004 45 TCTATCG 30 2.1669384E-6 45.000004 29 TACGACT 25 3.892651E-5 45.0 21 TAATGCG 345 0.0 43.04348 1 CGTAAGG 415 0.0 42.289154 2 CGTTTTT 12600 0.0 41.375 1 TCACGAC 680 0.0 41.360294 25 ACTATCG 60 3.6379788E-12 41.250004 36 TACGGGA 780 0.0 40.96154 4 AGTACGG 385 0.0 40.324673 2 ATATACG 95 0.0 40.263157 1 AGGGCGA 3180 0.0 40.259434 6 GTAGGGT 1930 0.0 40.103626 4 AAAGTCG 90 0.0 40.000004 1 ATACGAC 45 1.9304935E-8 40.000004 10 TATCCGC 45 1.9304935E-8 40.000004 44 GCGTAAG 310 0.0 39.919353 1 >>END_MODULE